Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029188 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.3e-203 712.2 424 100.0
PGSC0003DMG400029189 Solanum tuberosum HOM05D005467 ORTHO05D006523 8.0e-103 378.3 500 50.0
PGSC0003DMG400017873 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-78 298.1 461 37.5
Sopen02g012020 Solanum pennellii HOM05D005467 ORTHO05D006523 7.5e-77 292.0 474 39.7
Sopen02g012000 Solanum pennellii HOM05D005467 ORTHO05D006523 3.7e-76 289.7 473 40.2
Peaxi162Scf00159g00823 Petunia axillaris HOM05D005467 ORTHO05D006523 1.9e-75 287.3 330 52.1
Solyc02g038680.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.5e-74 283.1 457 41.1
Sopen02g012010 Solanum pennellii HOM05D005467 ORTHO05D006523 3.3e-72 276.6 476 41.0
Solyc02g038650.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.6e-69 266.9 422 40.0
Solyc02g038670.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.5e-64 251.1 434 40.3
Peaxi162Scf00159g00824 Petunia axillaris HOM05D005467 ORTHO05D006523 4.2e-51 206.5 250 46.8
Cfa008565 Carpinus fangiana HOM05D005467 ORTHO05D006523 1.2e-50 204.9 322 36.0
Sopen05g004250 Solanum pennellii HOM05D005467 ORTHO05D006523 1.2e-50 204.9 338 37.0
Peaxi162Scf00205g00928 Petunia axillaris HOM05D005467 ORTHO05D006523 2.7e-50 203.8 328 36.9
Thecc.02G211500 Theobroma cacao HOM05D005467 ORTHO05D006523 3.5e-50 203.4 328 36.3
CSS0047900 Camellia sinensis var. sinensis HOM05D005467 ORTHO05D006523 6.0e-50 202.6 322 36.3
Potri.010G116200 Populus trichocarpa HOM05D005467 ORTHO05D006523 1.3e-49 201.4 328 36.3
Sopen02g012080 Solanum pennellii HOM05D005467 ORTHO05D006523 1.8e-49 201.1 413 35.4
Migut.L00826 Erythranthe guttata HOM05D005467 ORTHO05D006523 2.3e-49 200.7 328 36.6
Migut.L00653 Erythranthe guttata HOM05D005467 ORTHO05D006523 3.9e-49 199.9 328 36.3
Sabra10G0087600 Salix brachista HOM05D005467 ORTHO05D006523 6.7e-49 199.1 328 35.7
Sabra10G0086000 Salix brachista HOM05D005467 ORTHO05D006523 8.7e-49 198.7 328 35.7
Cc11_g09130 Coffea canephora HOM05D005467 ORTHO05D006523 1.1e-48 198.4 322 36.0
Solyc05g008420.4 Solanum lycopersicum HOM05D005467 ORTHO05D006523 1.5e-48 198.0 330 37.0
Nitab4.5_0000350g0200 Nicotiana tabacum HOM05D005467 ORTHO05D006523 2.5e-48 197.2 317 36.9
CAN.G1489.4 Capsicum annuum HOM05D005467 ORTHO05D006523 3.3e-48 196.8 328 36.0
Manes.06G062500 Manihot esculenta HOM05D005467 ORTHO05D006523 3.3e-48 196.8 322 35.7
Nn3g18021 Nelumbo nucifera HOM05D005467 ORTHO05D006523 3.3e-48 196.8 328 34.8
TWI31G0476 Tripterygium wilfordii HOM05D005467 ORTHO05D006523 3.3e-48 196.8 322 36.3
Gohir.A04G099200 Gossypium hirsutum HOM05D005467 ORTHO05D006523 4.3e-48 196.4 323 36.8
Actinidia14942 Actinidia chinensis HOM05D005467 ORTHO05D006523 5.6e-48 196.1 318 36.5
DCAR_007277 Daucus carota HOM05D005467 ORTHO05D006523 5.6e-48 196.1 328 33.5
TAR629G1677 Trochodendron aralioides HOM05D005467 ORTHO05D006523 7.4e-48 195.7 328 35.4
Cpa.g.sc65.104 Carica papaya HOM05D005467 ORTHO05D006523 1.3e-47 194.9 328 35.4
Gohir.D04G138566 Gossypium hirsutum HOM05D005467 ORTHO05D006523 2.8e-47 193.7 323 36.2
Gorai.012G123600 Gossypium raimondii HOM05D005467 ORTHO05D006523 4.8e-47 193.0 323 36.2
GSVIVG01011792001 Vitis vinifera HOM05D005467 ORTHO05D006523 4.8e-47 193.0 328 35.1
MBI10_g46301_MAGBIO Magnolia biondii HOM05D005467 ORTHO05D006523 6.2e-47 192.6 328 34.8
RcHm_v2.0_Chr4g0433781 Rosa chinensis HOM05D005467 ORTHO05D006523 8.1e-47 192.2 322 35.7
Ciclev10015390m.g Citrus clementina HOM05D005467 ORTHO05D006523 1.1e-46 191.8 322 35.1
Glyma.20G124100 Glycine max HOM05D005467 ORTHO05D006523 1.4e-46 191.4 328 34.8
Sed0008724 Sechium edule HOM05D005467 ORTHO05D006523 2.4e-46 190.7 328 33.2
ClCG05G022280 Citrullus lanatus HOM05D005467 ORTHO05D006523 3.1e-46 190.3 334 32.3
FvH4_4g26200 Fragaria vesca HOM05D005467 ORTHO05D006523 6.9e-46 189.1 322 34.8
PGR119G0286 Punica granatum HOM05D005467 ORTHO05D006523 6.9e-46 189.1 328 33.8
Glyma.10G266400 Glycine max HOM05D005467 ORTHO05D006523 1.2e-45 188.3 328 34.5
FAN07G0694 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.5e-45 188.0 322 34.8
Prupe.1G321400 Prunus persica HOM05D005467 ORTHO05D006523 1.5e-45 188.0 322 34.5
TPR.G4835 Trifolium pratense HOM05D005467 ORTHO05D006523 2.0e-45 187.6 322 35.1
MD16G1031500 Malus domestica HOM05D005467 ORTHO05D006523 3.4e-45 186.8 322 33.5
Lj5g0001822 Lotus japonicus HOM05D005467 ORTHO05D006523 4.5e-45 186.4 328 34.8
arahy.Tifrunner.gnm1.ann1.F0PHAM Arachis hypogaea HOM05D005467 ORTHO05D006523 7.6e-45 185.7 328 33.8
arahy.Tifrunner.gnm1.ann1.U1J3BU Arachis hypogaea HOM05D005467 ORTHO05D006523 7.6e-45 185.7 328 33.8
HanXRQChr15g0477671 Helianthus annuus HOM05D005467 ORTHO05D006523 1.3e-44 184.9 322 34.2
Lalb_Chr21g0308561 Lupinus albus HOM05D005467 ORTHO05D006523 1.3e-44 184.9 322 33.2
Phvul.007G035400 Phaseolus vulgaris HOM05D005467 ORTHO05D006523 1.3e-44 184.9 328 33.2
PSO063G5439 Papaver somniferum HOM05D005467 ORTHO05D006523 2.2e-44 184.1 324 33.6
CANSAT01G3134 Cannabis sativa HOM05D005467 ORTHO05D006523 2.9e-44 183.7 329 32.2
CiPaw.05G246600 Carya illinoinensis HOM05D005467 ORTHO05D006523 4.9e-44 183.0 328 34.5
SGA_v2.0_scaffold50G18532 Striga asiatica HOM05D005467 ORTHO05D006523 8.4e-44 182.2 348 33.9
CsaV3_5G034840 Cucumis sativus L. HOM05D005467 ORTHO05D006523 1.1e-43 181.8 322 32.9
Medtr1g108650 Medicago truncatula HOM05D005467 ORTHO05D006523 1.1e-43 181.8 322 33.5
PSO782G0553 Papaver somniferum HOM05D005467 ORTHO05D006523 1.4e-43 181.4 338 33.4
Lsat_1_v5_gn_3_54101 Lactuca sativa HOM05D005467 ORTHO05D006523 1.9e-43 181.0 328 32.9
VMungo0720G1946 Vigna mungo HOM05D005467 ORTHO05D006523 1.9e-43 181.0 323 32.8
AUR62039552 Chenopodium quinoa HOM05D005467 ORTHO05D006523 2.5e-43 180.6 338 34.0
ECA246G2902 Erigeron canadensis HOM05D005467 ORTHO05D006523 4.2e-43 179.9 328 32.3
Os01g0506200 Oryza sativa ssp. japonica HOM05D005467 ORTHO05D006523 4.2e-43 179.9 315 32.4
PGSC0003DMG400023165 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.6e-42 177.9 239 48.1
Psat6g222960 Pisum sativum HOM05D005467 ORTHO05D006523 2.1e-42 177.6 322 34.2
Rhsim09G0101300 Rhododendron simsii HOM05D005467 ORTHO05D006523 2.7e-42 177.2 364 32.4
Eucgr.G02222 Eucalyptus grandis HOM05D005467 ORTHO05D006523 4.6e-42 176.4 322 33.2
Aqoxy3G00153 Aquilegia oxysepala HOM05D005467 ORTHO05D006523 6.0e-42 176.0 322 33.2
AUR62014129 Chenopodium quinoa HOM05D005467 ORTHO05D006523 7.9e-42 175.6 338 33.1
Hma1.2p1_0114F.1_g055340 Hydrangea macrophylla HOM05D005467 ORTHO05D006523 7.9e-42 175.6 340 32.4
PGSC0003DMG400017876 Solanum tuberosum HOM05D005467 ORTHO05D006523 2.3e-41 174.1 339 40.1
unitig_21.g20024 Utricularia gibba HOM05D000903 ORTHO05D000731 2.3e-41 174.1 323 33.4
Lj6C750G3 Lonicera japonica HOM05D005467 ORTHO05D006523 1.9e-40 171.0 322 33.2
Duzib248G1088 Durio zibethinus HOM05D005467 ORTHO05D006523 2.5e-40 170.6 306 35.3
Ah.02g128100 Amaranthus hybridus HOM05D005467 ORTHO05D006523 6.2e-39 166.0 334 32.0
TAR622G1271 Trochodendron aralioides HOM05D005467 ORTHO05D006523 3.1e-38 163.7 306 32.7
QL01p002615 Quercus lobata HOM05D005467 ORTHO05D006523 4.0e-38 163.3 410 28.3
HPP92_008650 Vanilla planifolia HOM05D005467 ORTHO05D006523 5.3e-38 162.9 328 29.6
Nitab4.5_0000293g0010 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.9e-38 162.5 328 32.6
Atru.chr11.358 Acer truncatum HOM05D005467 ORTHO05D006523 9.0e-38 162.2 300 33.3
Ca_11108_v3 Cicer arietinum L. HOM05D005467 ORTHO05D006523 1.9e-35 154.5 322 30.4
Hund24998 Selenicereus undatus HOM05D005467 ORTHO05D006523 7.9e-34 149.1 322 31.4
FAN12G3855 Fragaria x ananassa HOM05D005467 ORTHO05D006523 8.7e-33 145.6 322 30.4
Zm00001eb341680 Zea mays HOM05D005467 ORTHO05D006523 1.5e-32 144.8 351 27.9
FAN12G1869 Fragaria x ananassa HOM05D005467 ORTHO05D006523 3.3e-32 143.7 322 30.4
Solyc02g038700.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 2.2e-31 141.0 327 35.8
Nitab4.5_0004524g0050 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.3e-31 139.4 114 58.8
MSTRG.879 Avicennia marina HOM05D005467 ORTHO05D006523 2.2e-28 131.0 276 30.4
FAN17G2566 Fragaria x ananassa HOM05D005467 ORTHO05D006523 8.5e-28 129.0 248 33.5
Nitab4.5_0000350g0270 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.2e-27 125.9 124 51.6
Nitab4.5_0002820g0080 Nicotiana tabacum HOM05D005467 ORTHO05D006523 1.6e-26 124.8 121 50.4
Nitab4.5_0004367g0150 Nicotiana tabacum HOM05D005467 ORTHO05D006523 6.1e-26 122.9 124 49.2
SMO172G0164 Selaginella moellendorffii HOM05D005467 ORTHO05D006523 3.0e-25 120.6 317 26.2
vmacro10622 Vaccinium macrocarpon HOM05D005467 ORTHO05D006523 5.1e-25 119.8 324 28.7
PGSC0003DMG400017875 Solanum tuberosum HOM05D005467 ORTHO05D006523 1.1e-24 118.6 73 75.3
CBR_g17592 Chara braunii HOM05D005467 ORTHO05D006523 2.5e-24 117.5 319 27.9
MELO3C012295.2 Cucumis melo HOM05D005467 ORTHO05D006523 3.3e-24 117.1 271 28.4
AagrBONN_evm.TU.Sc2ySwM_344.4352 Anthoceros agrestis HOM05D005467 ORTHO05D006523 2.2e-23 114.4 327 26.0
Gohir.D04G138632 Gossypium hirsutum HOM05D005467 ORTHO05D006523 2.4e-22 110.9 249 30.1
Peaxi162Scf00205g00812 Petunia axillaris HOM05D005467 ORTHO05D006523 8.5e-20 102.4 130 45.4
Dinv05879 Davidia involucrata HOM05D005467 ORTHO05D006523 2.5e-19 100.9 253 28.5
ATR0041G011 Amborella trichopoda HOM05D005467 ORTHO05D006523 4.2e-19 100.1 133 36.1
Nitab4.5_0004524g0030 Nicotiana tabacum HOM05D005467 ORTHO05D006523 7.9e-18 95.9 125 37.6
Sc04g0005780 Simmondsia chinensis HOM05D005467 ORTHO05D006523 1.8e-17 94.7 121 39.7
Pp3c22_2590 Physcomitrium patens HOM05D005467 ORTHO05D006523 7.4e-16 89.4 103 38.8
Solyc02g038660.3 Solanum lycopersicum HOM05D005467 ORTHO05D006523 7.4e-16 89.4 399 23.1
Solyc02g062200.1 Solanum lycopersicum HOM05D005467 ORTHO05D006523 3.1e-14 84.0 164 31.1
MCO12G173 Micromonas commoda HOM05D005467 ORTHO05D006523 3.5e-13 80.5 329 22.2
Haze_11050 Corylus avellana HOM05D005467 ORTHO05D006523 1.6e-10 71.6 182 26.9
Lsat_1_v5_gn_3_86380 Lactuca sativa HOM05D005467 ORTHO05D006523 2.7e-10 70.9 158 29.1
FAN17G1461 Fragaria x ananassa HOM05D005467 ORTHO05D006523 1.4e-09 68.6 74 44.6
Sed0021963 Sechium edule HOM05D005467 ORTHO05D006523 2.3e-09 67.8 163 28.2
CDE07G1108 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 3.9e-09 67.0 62 46.8
CDE06G2222 Ceratophyllum demersum HOM05D005467 ORTHO05D006523 1.5e-08 65.1 96 35.4
Lsat_1_v5_gn_4_96160 Lactuca sativa HOM05D005467 ORTHO05D006523 2.0e-08 64.7 94 33.0
RcHm_v2.0_Chr7g0235151 Rosa chinensis HOM05D005467 ORTHO05D006523 2.0e-08 64.7 82 36.6
Sopen02g012660 Solanum pennellii HOM05D000004 ORTHO05D000002 4.4e-08 63.5 70 47.1
Lsat_1_v5_gn_7_58700 Lactuca sativa HOM05D005467 ORTHO05D006523 7.4e-08 62.8 94 31.9
SEGI_12457 Sequoiadendron giganteum HOM05D005467 ORTHO05D006523 1.1e-06 58.9 76 31.6
Oeu064202.3 Olea europaea HOM05D005467 ORTHO05D006523 2.4e-06 57.8 72 37.5


User provided reference genes

Program Settings