Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 8.8e-81 303.5 148 100.0
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 8.5e-68 260.4 168 79.2
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 8.5e-68 260.4 187 73.3
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 1.8e-65 252.7 187 72.2
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 2.3e-65 252.3 201 67.2
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 3.0e-65 251.9 187 71.1
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 3.9e-65 251.5 187 71.1
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 3.9e-65 251.5 206 66.0
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.2e-65 251.1 187 70.1
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 5.2e-65 251.1 187 70.1
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 1.5e-64 249.6 187 68.4
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 3.3e-64 248.4 187 68.4
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 5.7e-64 247.7 187 68.4
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 9.7e-64 246.9 187 70.1
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 1.3e-63 246.5 187 67.9
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 1.3e-63 246.5 187 67.9
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 1.7e-63 246.1 187 67.9
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 1.7e-63 246.1 187 70.1
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 2.2e-63 245.7 187 67.9
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 2.2e-63 245.7 186 67.2
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 2.8e-63 245.4 187 67.4
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 2.8e-63 245.4 187 68.4
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 2.8e-63 245.4 196 65.8
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 3.7e-63 245.0 187 66.8
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 4.8e-63 244.6 187 67.4
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 4.8e-63 244.6 187 67.9
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 4.8e-63 244.6 187 69.5
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 4.8e-63 244.6 187 66.8
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 6.3e-63 244.2 187 66.3
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 8.2e-63 243.8 187 66.8
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 8.2e-63 243.8 187 66.8
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 8.2e-63 243.8 187 66.8
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 8.2e-63 243.8 187 66.3
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 8.2e-63 243.8 187 66.8
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.1e-62 243.4 187 70.1
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 1.1e-62 243.4 187 66.3
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.4e-62 243.0 187 66.8
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.8e-62 242.7 187 67.9
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.8e-62 242.7 187 66.3
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.8e-62 242.7 187 66.3
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 1.8e-62 242.7 187 67.4
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 2.4e-62 242.3 187 67.4
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 2.4e-62 242.3 187 66.3
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 2.4e-62 242.3 187 66.8
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 3.1e-62 241.9 187 65.8
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 4.1e-62 241.5 187 65.8
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 4.1e-62 241.5 187 66.8
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 5.3e-62 241.1 187 65.8
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 7.0e-62 240.7 187 66.3
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 7.0e-62 240.7 187 67.9
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 7.0e-62 240.7 187 66.3
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 9.1e-62 240.4 187 65.2
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 9.1e-62 240.4 203 63.1
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 9.1e-62 240.4 187 65.8
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 1.2e-61 240.0 187 65.8
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.2e-61 240.0 187 66.3
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.2e-61 240.0 187 66.3
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 1.2e-61 240.0 187 66.3
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 1.2e-61 240.0 187 65.8
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.6e-61 239.6 187 65.2
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.6e-61 239.6 162 77.8
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 1.6e-61 239.6 187 65.8
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 2.0e-61 239.2 187 65.8
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 2.6e-61 238.8 187 67.4
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.6e-61 238.8 200 62.5
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 2.6e-61 238.8 187 66.3
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 2.6e-61 238.8 186 65.6
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 3.5e-61 238.4 187 65.8
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 3.5e-61 238.4 187 66.8
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 3.5e-61 238.4 187 67.4
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 7.7e-61 237.3 187 65.2
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 1.0e-60 236.9 187 65.2
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 1.0e-60 236.9 187 64.7
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 1.3e-60 236.5 187 64.7
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.3e-60 236.5 187 65.2
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 1.3e-60 236.5 187 67.4
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.7e-60 236.1 187 64.7
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 1.7e-60 236.1 187 66.8
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 2.9e-60 235.3 187 65.2
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 2.9e-60 235.3 182 67.0
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 2.9e-60 235.3 184 67.4
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.9e-60 235.3 187 66.3
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 3.8e-60 235.0 187 64.7
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 3.8e-60 235.0 162 77.2
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 3.8e-60 235.0 187 64.2
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 8.5e-60 233.8 187 65.8
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 8.5e-60 233.8 186 65.1
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 1.1e-59 233.4 187 63.6
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.5e-59 233.0 187 63.6
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 1.5e-59 233.0 187 64.7
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 1.5e-59 233.0 187 64.7
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 1.5e-59 233.0 187 63.6
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 1.5e-59 233.0 187 64.7
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.9e-59 232.6 187 64.2
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.9e-59 232.6 185 64.9
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.9e-59 232.6 187 64.2
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 5.5e-59 231.1 187 63.1
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 5.5e-59 231.1 187 63.1
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 5.5e-59 231.1 187 64.2
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 5.5e-59 231.1 187 63.1
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 5.5e-59 231.1 187 63.1
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 7.2e-59 230.7 187 64.2
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 7.2e-59 230.7 187 64.2
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 7.2e-59 230.7 187 64.2
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 7.2e-59 230.7 187 64.2
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 9.4e-59 230.3 187 62.6
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.2e-58 229.9 185 62.7
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 1.6e-58 229.6 185 62.2
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 2.1e-58 229.2 187 64.2
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 2.1e-58 229.2 187 63.1
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 3.6e-58 228.4 187 62.0
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 4.7e-58 228.0 187 62.0
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 8.0e-58 227.3 181 65.2
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 2.3e-57 225.7 187 61.0
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.3e-57 225.7 182 62.6
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 2.3e-57 225.7 182 62.6
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 5.2e-57 224.6 206 58.3
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 6.7e-57 224.2 208 58.7
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 2.0e-56 222.6 193 62.2
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.7e-55 219.5 186 60.2
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 4.8e-55 218.0 241 51.5
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 4.8e-55 218.0 211 56.9
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 6.3e-55 217.6 183 62.3
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 3.1e-54 215.3 185 60.5
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 4.1e-54 214.9 187 59.9
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 5.9e-53 211.1 173 61.8
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 5.0e-52 208.0 187 58.8
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 1.1e-51 206.8 173 62.4
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.9e-51 206.1 187 56.7
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.9e-51 206.1 187 56.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 7.2e-51 204.1 187 56.1
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 5.2e-49 198.0 169 60.4
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 6.8e-49 197.6 187 56.1
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 9.8e-48 193.7 172 57.0
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.3e-47 193.4 99 89.9
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 2.2e-47 192.6 99 87.9
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 6.3e-47 191.0 186 54.8
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 8.3e-47 190.7 98 88.8
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 4.1e-46 188.3 159 66.7
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 4.1e-46 188.3 172 58.1
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 1.0e-44 183.7 98 85.7
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 3.8e-44 181.8 187 58.3
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 6.5e-44 181.0 99 84.8
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 1.6e-42 176.4 158 58.2
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 6.1e-42 174.5 99 79.8
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 1.0e-41 173.7 154 60.4
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 5.2e-41 171.4 149 61.7
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 2.2e-39 166.0 187 50.8
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 2.8e-39 165.6 214 42.5
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 3.5e-37 158.7 148 57.4
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 5.6e-35 151.4 185 42.7
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 1.1e-30 137.1 167 43.7
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.2e-25 118.2 133 48.9
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 2.0e-24 116.3 175 39.4
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 5.8e-24 114.8 142 46.5
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 9.8e-24 114.0 124 50.0
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.1e-14 84.0 46 87.0
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.9e-14 83.2 41 92.7
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 7.1e-14 81.3 48 79.2
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 9.2e-14 80.9 106 44.3
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.1e-13 79.7 45 82.2
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 7.8e-13 77.8 68 58.8
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.7e-12 76.6 45 80.0
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 2.3e-12 76.3 45 82.2
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 3.9e-12 75.5 41 82.9
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 6.6e-12 74.7 45 77.8
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 3.3e-11 72.4 43 79.1
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 4.3e-11 72.0 39 79.5


User provided reference genes

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