Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029099 Solanum tuberosum HOM05D003943 ORTHO05D004753 2.7e-132 475.3 239 100.0
PGSC0003DMG400021625 Solanum tuberosum HOM05D003943 ORTHO05D004753 1.3e-123 446.4 261 88.9
Sopen09g036280 Solanum pennellii HOM05D003943 ORTHO05D004753 6.7e-123 444.1 261 88.5
GSVIVG01011153001 Vitis vinifera HOM05D003943 ORTHO05D004753 2.1e-116 422.5 260 83.5
Dinv20358 Davidia involucrata HOM05D003943 ORTHO05D004753 6.1e-116 421.0 261 83.1
CANSAT64G2459 Cannabis sativa HOM05D003943 ORTHO05D004753 1.8e-115 419.5 261 80.8
Actinidia38793 Actinidia chinensis HOM05D003943 ORTHO05D004753 2.3e-115 419.1 261 82.8
Lj6A21G25 Lonicera japonica HOM05D003943 ORTHO05D004753 2.3e-115 419.1 261 82.0
Nn2g14305 Nelumbo nucifera HOM05D003943 ORTHO05D004753 3.0e-115 418.7 261 83.1
Prupe.4G241300 Prunus persica HOM05D003943 ORTHO05D004753 5.1e-115 417.9 261 81.6
Actinidia21868 Actinidia chinensis HOM05D003943 ORTHO05D004753 6.7e-115 417.5 261 82.0
Lsat_1_v5_gn_4_88760 Lactuca sativa HOM05D003943 ORTHO05D004753 6.7e-115 417.5 261 82.4
Haze_03432 Corylus avellana HOM05D003943 ORTHO05D004753 8.8e-115 417.2 261 82.0
Haze_20185 Corylus avellana HOM05D003943 ORTHO05D004753 8.8e-115 417.2 261 82.0
FvH4_1g24730 Fragaria vesca HOM05D003943 ORTHO05D004753 1.1e-114 416.8 261 80.8
FvH4_1g24810 Fragaria vesca HOM05D003943 ORTHO05D004753 1.1e-114 416.8 261 80.8
FAN19G3070 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.1e-114 416.8 261 80.8
Lj6A3G40 Lonicera japonica HOM05D003943 ORTHO05D004753 1.1e-114 416.8 260 81.9
CSS0000599 Camellia sinensis var. sinensis HOM05D003943 ORTHO05D004753 1.5e-114 416.4 258 83.7
CiPaw.10G017400 Carya illinoinensis HOM05D003943 ORTHO05D004753 1.5e-114 416.4 261 82.4
MELO3C024586.2 Cucumis melo HOM05D003943 ORTHO05D004753 1.5e-114 416.4 261 82.8
Oeu049654.1 Olea europaea HOM05D003943 ORTHO05D004753 1.5e-114 416.4 261 82.0
MSTRG.10894 Avicennia marina HOM05D003943 ORTHO05D004753 2.0e-114 416.0 261 82.0
HanXRQChr09g0277391 Helianthus annuus HOM05D003943 ORTHO05D004753 2.0e-114 416.0 261 81.2
Rhsim08G0248000 Rhododendron simsii HOM05D003943 ORTHO05D004753 2.0e-114 416.0 261 81.6
vmacro18760 Vaccinium macrocarpon HOM05D003943 ORTHO05D004753 2.6e-114 415.6 265 81.5
Ciclev10012509m.g Citrus clementina HOM05D003943 ORTHO05D004753 3.3e-114 415.2 261 82.8
Lsat_1_v5_gn_6_32361 Lactuca sativa HOM05D003943 ORTHO05D004753 3.3e-114 415.2 260 82.3
TAR633G0404 Trochodendron aralioides HOM05D003943 ORTHO05D004753 3.3e-114 415.2 261 82.4
HanXRQChr17g0533251 Helianthus annuus HOM05D003943 ORTHO05D004753 4.4e-114 414.8 261 80.8
RcHm_v2.0_Chr2g0122251 Rosa chinensis HOM05D003943 ORTHO05D004753 5.7e-114 414.5 261 80.5
RcHm_v2.0_Chr4g0409741 Rosa chinensis HOM05D003943 ORTHO05D004753 5.7e-114 414.5 261 80.5
Cfa010504 Carpinus fangiana HOM05D003943 ORTHO05D004753 7.4e-114 414.1 261 81.2
TAR623G0676 Trochodendron aralioides HOM05D003943 ORTHO05D004753 7.4e-114 414.1 261 81.6
QL07p036748 Quercus lobata HOM05D003943 ORTHO05D004753 9.7e-114 413.7 260 81.2
Atru.chr12.911 Acer truncatum HOM05D003943 ORTHO05D004753 1.7e-113 412.9 261 82.0
Atru.chr8.1362 Acer truncatum HOM05D003943 ORTHO05D004753 1.7e-113 412.9 261 82.0
CsaV3_6G041100 Cucumis sativus L. HOM05D003943 ORTHO05D004753 1.7e-113 412.9 261 82.4
Oeu039454.1 Olea europaea HOM05D003943 ORTHO05D004753 2.2e-113 412.5 260 81.9
THA.LOC104809953 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 2.2e-113 412.5 261 82.0
Nitab4.5_0008073g0030 Nicotiana tabacum HOM05D003943 ORTHO05D004753 2.8e-113 412.1 261 83.1
unitig_32.g11085 Utricularia gibba HOM05D003943 ORTHO05D004753 2.8e-113 412.1 260 81.9
THA.LOC104826802 Tarenaya hassleriana HOM05D003943 ORTHO05D004753 3.7e-113 411.8 261 82.0
ClCG01G015010 Citrullus lanatus HOM05D003943 ORTHO05D004753 4.8e-113 411.4 261 81.6
Eucgr.K02620 Eucalyptus grandis HOM05D003943 ORTHO05D004753 4.8e-113 411.4 261 81.2
MD05G1235300 Malus domestica HOM05D003943 ORTHO05D004753 6.3e-113 411.0 261 80.1
Manes.01G025400 Manihot esculenta HOM05D003943 ORTHO05D004753 8.2e-113 410.6 261 81.2
Sabra16G0070600 Salix brachista HOM05D003943 ORTHO05D004753 8.2e-113 410.6 261 82.0
Sabra16G0072800 Salix brachista HOM05D003943 ORTHO05D004753 8.2e-113 410.6 261 82.0
CDE10G1025 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.4e-112 409.8 261 81.2
TWI77G0554 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 1.4e-112 409.8 261 80.8
Manes.08G033500 Manihot esculenta HOM05D003943 ORTHO05D004753 1.8e-112 409.5 261 80.8
Potri.016G070400 Populus trichocarpa HOM05D003943 ORTHO05D004753 2.4e-112 409.1 261 81.2
TWI74G1172 Tripterygium wilfordii HOM05D003943 ORTHO05D004753 4.1e-112 408.3 261 80.5
Hund10875 Selenicereus undatus HOM05D003943 ORTHO05D004753 5.3e-112 407.9 261 81.2
Sed0023950 Sechium edule HOM05D003943 ORTHO05D004753 6.9e-112 407.5 261 80.8
Hma1.2p1_1104F.1_g257380 Hydrangea macrophylla HOM05D003943 ORTHO05D004753 9.1e-112 407.1 259 82.2
Potri.006G203400 Populus trichocarpa HOM05D003943 ORTHO05D004753 1.5e-111 406.4 261 81.2
Sed0024685 Sechium edule HOM05D003943 ORTHO05D004753 1.5e-111 406.4 261 80.5
Migut.I01176 Erythranthe guttata HOM05D003943 ORTHO05D004753 2.0e-111 406.0 261 79.7
MD10G1211300 Malus domestica HOM05D003943 ORTHO05D004753 2.0e-111 406.0 261 79.7
Peaxi162Scf00286g00330 Petunia axillaris HOM05D003943 ORTHO05D004753 2.6e-111 405.6 264 81.1
PGR004G2105 Punica granatum HOM05D003943 ORTHO05D004753 7.7e-111 404.1 261 80.1
PGR142G4032 Punica granatum HOM05D003943 ORTHO05D004753 7.7e-111 404.1 261 80.1
Cc04_g00390 Coffea canephora HOM05D003943 ORTHO05D004753 1.7e-110 402.9 269 78.4
ATR0772G207 Amborella trichopoda HOM05D003943 ORTHO05D004753 2.9e-110 402.1 261 78.9
Glyma.02G196900 Glycine max HOM05D003943 ORTHO05D004753 3.8e-110 401.7 261 78.9
Duzib093G1950 Durio zibethinus HOM05D003943 ORTHO05D004753 6.5e-110 401.0 261 79.3
arahy.Tifrunner.gnm1.ann1.07MWYB Arachis hypogaea HOM05D003943 ORTHO05D004753 8.5e-110 400.6 261 78.5
arahy.Tifrunner.gnm1.ann1.T05T6P Arachis hypogaea HOM05D003943 ORTHO05D004753 8.5e-110 400.6 261 78.5
Lalb_Chr11g0067891 Lupinus albus HOM05D003943 ORTHO05D004753 8.5e-110 400.6 261 78.9
Lj1g0010263 Lotus japonicus HOM05D003943 ORTHO05D004753 1.1e-109 400.2 261 77.8
Lalb_Chr02g0144091 Lupinus albus HOM05D003943 ORTHO05D004753 1.1e-109 400.2 261 78.5
Glyma.10G081400 Glycine max HOM05D003943 ORTHO05D004753 1.4e-109 399.8 261 78.2
SalBow6G5742 Salvia bowleyana HOM05D003943 ORTHO05D004753 1.4e-109 399.8 261 78.5
Glyma.10G002300 Glycine max HOM05D003943 ORTHO05D004753 1.9e-109 399.4 261 78.2
Phvul.007G268100 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 1.9e-109 399.4 261 78.2
Aa31sc52G210 Aethionema arabicum HOM05D003943 ORTHO05D004753 4.2e-109 398.3 261 78.9
Gohir.A09G134200 Gossypium hirsutum HOM05D003943 ORTHO05D004753 4.2e-109 398.3 261 78.9
Gorai.006G149400 Gossypium raimondii HOM05D003943 ORTHO05D004753 4.2e-109 398.3 261 78.9
Cpa.g.sc104.32 Carica papaya HOM05D003943 ORTHO05D004753 5.5e-109 397.9 261 78.5
Mapoly0020s0123 Marchantia polymorpha HOM05D003943 ORTHO05D004753 5.5e-109 397.9 261 78.2
Pp3c7_2280 Physcomitrium patens HOM05D003943 ORTHO05D004753 5.5e-109 397.9 261 77.8
AT5G06360 Arabidopsis thaliana HOM05D003943 ORTHO05D004753 7.2e-109 397.5 261 79.3
Phvul.010G103000 Phaseolus vulgaris HOM05D003943 ORTHO05D004753 7.2e-109 397.5 261 77.8
Thecc.05G104300 Theobroma cacao HOM05D003943 ORTHO05D004753 7.2e-109 397.5 261 78.9
FAN23G0735 Fragaria x ananassa HOM05D003943 ORTHO05D004753 9.4e-109 397.1 277 75.1
SMO367G0573 Selaginella moellendorffii HOM05D003943 ORTHO05D004753 9.4e-109 397.1 261 77.0
Sp6g36490 Schrenkiella parvula HOM05D003943 ORTHO05D004753 1.2e-108 396.7 261 78.9
VMungo0331G0074 Vigna mungo HOM05D003943 ORTHO05D004753 1.2e-108 396.7 261 77.4
VMungo0720G1310 Vigna mungo HOM05D003943 ORTHO05D004753 1.2e-108 396.7 261 77.4
C09p70420 Brassica napus HOM05D003943 ORTHO05D004753 1.6e-108 396.4 260 78.8
BolC9t59788H Brassica oleracea HOM05D003943 ORTHO05D004753 1.6e-108 396.4 260 78.8
Gohir.D01G191300 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.6e-108 396.4 261 78.2
Gorai.002G235200 Gossypium raimondii HOM05D003943 ORTHO05D004753 1.6e-108 396.4 261 78.2
C02p02670 Brassica napus HOM05D003943 ORTHO05D004753 2.1e-108 396.0 261 78.5
BolC2t06233H Brassica oleracea HOM05D003943 ORTHO05D004753 2.1e-108 396.0 261 78.5
BcaB05g21673 Brassica carinata HOM05D003943 ORTHO05D004753 2.7e-108 395.6 261 78.2
BcaC03g13169 Brassica carinata HOM05D003943 ORTHO05D004753 2.7e-108 395.6 261 78.5
COL.COLO4_29575 Corchorus olitorius HOM05D003943 ORTHO05D004753 2.7e-108 395.6 261 79.7
Sabra06G0156600 Salix brachista HOM05D003943 ORTHO05D004753 2.7e-108 395.6 285 74.7
ECA233G4676 Erigeron canadensis HOM05D003943 ORTHO05D004753 3.6e-108 395.2 261 77.4
HPP92_002146 Vanilla planifolia HOM05D003943 ORTHO05D004753 4.7e-108 394.8 255 78.8
A10p30010 Brassica napus HOM05D003943 ORTHO05D004753 1.4e-107 393.3 259 78.8
BraA02t04878Z Brassica rapa HOM05D003943 ORTHO05D004753 1.4e-107 393.3 260 78.5
BraA10t45041Z Brassica rapa HOM05D003943 ORTHO05D004753 1.4e-107 393.3 259 78.8
Gohir.A01G201400 Gossypium hirsutum HOM05D003943 ORTHO05D004753 1.8e-107 392.9 261 77.8
PSO384G4082 Papaver somniferum HOM05D003943 ORTHO05D004753 2.3e-107 392.5 261 77.0
Aqoxy1G00659 Aquilegia oxysepala HOM05D003943 ORTHO05D004753 3.9e-107 391.7 261 77.0
PSO339G3654 Papaver somniferum HOM05D003943 ORTHO05D004753 3.9e-107 391.7 261 76.6
SGA_v2.0_scaffold71G24009 Striga asiatica HOM05D003943 ORTHO05D004753 5.2e-107 391.3 261 77.8
Thhalv10014439m.g Eutrema salsugineum HOM05D003943 ORTHO05D004753 1.5e-106 389.8 261 77.4
Carub.0006s0525 Capsella rubella HOM05D003943 ORTHO05D004753 2.0e-106 389.4 261 77.8
AagrBONN_evm.TU.Sc2ySwM_369.90 Anthoceros agrestis HOM05D003943 ORTHO05D004753 2.6e-106 389.0 261 75.9
CARHR207110 Cardamine hirsuta HOM05D003943 ORTHO05D004753 2.6e-106 389.0 261 76.6
Ca_16636_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 2.6e-106 389.0 261 76.2
AL6G16440 Arabidopsis lyrata HOM05D003943 ORTHO05D004753 3.3e-106 388.7 261 78.2
EL10Ac5g12966 Beta vulgaris HOM05D003943 ORTHO05D004753 3.3e-106 388.7 260 78.8
Ca_11700_v3 Cicer arietinum L. HOM05D003943 ORTHO05D004753 4.4e-106 388.3 261 76.6
Psat6g114680 Pisum sativum HOM05D003943 ORTHO05D004753 7.4e-106 387.5 261 76.2
Ah.12g059190 Amaranthus hybridus HOM05D003943 ORTHO05D004753 3.7e-105 385.2 261 76.2
AUR62036383 Chenopodium quinoa HOM05D003943 ORTHO05D004753 6.3e-105 384.4 261 77.0
TPR.G5876 Trifolium pratense HOM05D003943 ORTHO05D004753 6.3e-105 384.4 261 77.4
Medtr3g088865 Medicago truncatula HOM05D003943 ORTHO05D004753 7.0e-104 380.9 261 75.1
Lj2g0010046 Lotus japonicus HOM05D003943 ORTHO05D004753 9.1e-104 380.6 261 75.5
CBR_g12036 Chara braunii HOM05D003943 ORTHO05D004753 4.5e-103 378.3 261 73.6
AUR62030745 Chenopodium quinoa HOM05D003943 ORTHO05D004753 1.0e-102 377.1 255 76.9
Os07g0673100 Oryza sativa ssp. japonica HOM05D003943 ORTHO05D004753 1.3e-102 376.7 261 75.5
CiPaw.09G020900 Carya illinoinensis HOM05D003943 ORTHO05D004753 5.0e-102 374.8 240 81.2
Medtr0508s0010 Medicago truncatula HOM05D003943 ORTHO05D004753 1.5e-101 373.2 261 73.9
FAN19G1372 Fragaria x ananassa HOM05D003943 ORTHO05D004753 1.9e-101 372.9 241 78.8
FAN28G2380 Fragaria x ananassa HOM05D003943 ORTHO05D004753 5.5e-101 371.3 241 78.4
Gohir.D09G130700 Gossypium hirsutum HOM05D003943 ORTHO05D004753 3.6e-100 368.6 244 79.9
TPR.G2813 Trifolium pratense HOM05D003943 ORTHO05D004753 1.2e-98 363.6 276 71.0
MCO03G138 Micromonas commoda HOM05D003943 ORTHO05D004753 1.3e-97 360.1 261 67.4
Zm00001eb111290 Zea mays HOM05D003943 ORTHO05D004753 3.1e-96 355.5 261 70.9
Zm00001eb330440 Zea mays HOM05D003943 ORTHO05D004753 3.1e-96 355.5 261 70.9
Cre12.g507300 Chlamydomonas reinhardtii HOM05D003943 ORTHO05D004753 7.0e-96 354.4 261 69.0
AagrBONN_evm.TU.Sc2ySwM_340.394 Anthoceros agrestis HOM05D003943 ORTHO05D004753 7.7e-95 350.9 268 70.1
Rhsim05G0206200 Rhododendron simsii HOM05D003943 ORTHO05D004753 1.3e-94 350.1 240 78.3
PRCOL_00000915 Prasinoderma coloniale HOM05D003943 ORTHO05D004753 5.0e-94 348.2 261 69.0
Dinv37798 Davidia involucrata HOM05D003943 ORTHO05D004753 6.1e-92 341.3 213 81.7
CAN.G710.48 Capsicum annuum HOM05D003943 ORTHO05D004753 2.6e-90 335.9 309 63.8
FAN26G0481 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.1e-88 328.9 337 55.8
Sc14g0006610 Simmondsia chinensis HOM05D003943 ORTHO05D004753 4.5e-87 325.1 222 76.6
unitig_748.g7832 Utricularia gibba HOM05D003943 ORTHO05D004753 1.9e-85 319.7 201 80.6
DCAR_016668 Daucus carota HOM05D003943 ORTHO05D004753 4.2e-85 318.5 249 68.3
DCAR_017903 Daucus carota HOM05D003943 ORTHO05D004753 2.1e-84 316.2 240 69.2
Nitab4.5_0003291g0080 Nicotiana tabacum HOM05D003943 ORTHO05D004753 3.5e-79 298.9 258 68.2
SEGI_04875 Sequoiadendron giganteum HOM05D003943 ORTHO05D004753 7.8e-79 297.7 195 76.4
Aa31LG3G5080 Aethionema arabicum HOM05D003943 ORTHO05D004753 1.0e-78 297.4 200 77.5
Haze_27191 Corylus avellana HOM05D003943 ORTHO05D004753 1.4e-75 287.0 260 58.1
FAN23G1436 Fragaria x ananassa HOM05D003943 ORTHO05D004753 3.6e-68 262.3 177 74.6
Peaxi162Scf01149g00220 Petunia axillaris HOM05D003943 ORTHO05D004753 2.4e-64 249.6 161 79.5
BcaC06g32370 Brassica carinata HOM05D003943 ORTHO05D004753 4.6e-55 218.8 142 80.3
BcaNung06320 Brassica carinata HOM05D003943 ORTHO05D004753 7.8e-55 218.0 143 79.7
Cfa024104 Carpinus fangiana HOM05D003943 ORTHO05D123184 2.3e-54 216.5 228 50.0
CDE10G0110 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 1.1e-53 214.2 135 82.2
TPR.G6300 Trifolium pratense HOM05D003943 ORTHO05D004753 3.2e-48 196.1 240 49.2
RcHm_v2.0_Chr7g0216551 Rosa chinensis HOM05D003943 ORTHO05D004753 8.1e-44 181.4 249 48.6
Lsat_1_v5_gn_8_162181 Lactuca sativa HOM05D003943 ORTHO05D004753 9.9e-42 174.5 109 81.7
CDE10G0220 Ceratophyllum demersum HOM05D003943 ORTHO05D004753 8.4e-41 171.4 113 77.0
Duzib106G1686 Durio zibethinus HOM05D003943 ORTHO05D004753 6.0e-39 165.2 174 54.6
Lj9C540G13 Lonicera japonica HOM05D003943 ORTHO05D004753 8.7e-38 161.4 173 52.6
BcaC01g01015 Brassica carinata HOM05D003943 ORTHO05D004753 1.7e-33 147.1 106 73.6
SHI12410 Sapria himalayana HOM05D003943 ORTHO05D004753 2.1e-31 140.2 98 72.4
SHI12413 Sapria himalayana HOM05D003943 ORTHO05D004753 1.8e-27 127.1 88 76.1
Lsat_1_v5_gn_6_65181 Lactuca sativa HOM05D003943 ORTHO05D000236 3.1e-27 126.3 92 71.7
Actinidia21636 Actinidia chinensis HOM05D003943 ORTHO05D004753 1.9e-24 117.1 167 47.3
RcHm_v2.0_Chr7g0216591 Rosa chinensis HOM05D003943 ORTHO05D004753 2.1e-23 113.6 108 59.3
HanXRQChr03g0072971 Helianthus annuus HOM05D003943 ORTHO05D004753 2.3e-22 110.2 92 65.2
EL10Ac3g06422 Beta vulgaris HOM05D003943 ORTHO05D004753 6.7e-22 108.6 135 50.4
SHI12416 Sapria himalayana HOM05D001600 ORTHO05D001502 2.0e-18 97.1 64 78.1
RcHm_v2.0_Chr7g0216581 Rosa chinensis HOM05D003943 ORTHO05D004753 5.7e-13 79.0 81 54.3
SHI17182 Sapria himalayana HOM05D000004 ORTHO05D367797 5.0e-09 65.9 55 67.3
C03p87270 Brassica napus HOM05D000836 ORTHO05D000709 2.5e-08 63.5 44 72.7
Nitab4.5_0006519g0020 Nicotiana tabacum HOM05D000032 ORTHO05D005217 9.4e-08 61.6 42 76.2
CAN.G1001.28 Capsicum annuum HOM05D003943 ORTHO05D005733 1.2e-07 61.2 59 57.6
SHI30650 Sapria himalayana HOM05D004596 ORTHO05D005853 1.2e-07 61.2 62 58.1
SHI32256 Sapria himalayana HOM05D003943 ORTHO05D001502 3.6e-07 59.7 36 80.6
PSO455G0142 Papaver somniferum HOM05D000539 ORTHO05D000233 5.1e-06 55.8 146 37.0


User provided reference genes

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