Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029078 Solanum tuberosum HOM05D007902 ORTHO05D009839 1.5e-100 369.4 176 100.0
Sopen06g015820 Solanum pennellii HOM05D007902 ORTHO05D009839 3.4e-55 218.8 110 95.5
CAN.G591.5 Capsicum annuum HOM05D007902 ORTHO05D009839 1.0e-51 207.2 174 63.8
Peaxi162Scf00464g00015 Petunia axillaris HOM05D007902 ORTHO05D009839 3.0e-43 179.1 182 54.4
Nitab4.5_0002713g0030 Nicotiana tabacum HOM05D007902 ORTHO05D009839 2.3e-35 152.9 110 68.2
Nitab4.5_0000263g0270 Nicotiana tabacum HOM05D007902 ORTHO05D009839 6.6e-35 151.4 110 68.2
Cc02_g05590 Coffea canephora HOM05D007902 ORTHO05D009839 3.6e-25 119.0 115 53.0
vmacro09979 Vaccinium macrocarpon HOM05D007902 ORTHO05D009839 4.7e-25 118.6 115 51.3
Actinidia07804 Actinidia chinensis HOM05D007902 ORTHO05D009839 1.8e-24 116.7 110 55.5
HanXRQChr09g0251491 Helianthus annuus HOM05D007902 ORTHO05D009839 4.0e-24 115.5 116 54.3
Migut.F00588 Erythranthe guttata HOM05D007902 ORTHO05D009839 2.0e-23 113.2 104 56.7
Dinv21823 Davidia involucrata HOM05D007902 ORTHO05D009839 5.8e-23 111.7 115 51.3
Lsat_1_v5_gn_9_59200 Lactuca sativa HOM05D007902 ORTHO05D009839 7.6e-23 111.3 120 49.2
COL.COLO4_26867 Corchorus olitorius HOM05D005928 ORTHO05D007500 3.8e-22 109.0 118 49.2
Hma1.2p1_0292F.1_g115760 Hydrangea macrophylla HOM05D007902 ORTHO05D009839 4.9e-22 108.6 115 49.6
Thecc.10G175100 Theobroma cacao HOM05D007902 ORTHO05D009839 8.4e-22 107.8 140 45.0
Gohir.A13G005700 Gossypium hirsutum HOM05D007902 ORTHO05D009839 1.1e-21 107.5 116 50.9
Manes.07G138200 Manihot esculenta HOM05D007902 ORTHO05D009839 1.4e-21 107.1 112 52.7
Potri.019G049100 Populus trichocarpa HOM05D007902 ORTHO05D009839 1.4e-21 107.1 112 49.1
Sabra19G0058600 Salix brachista HOM05D007902 ORTHO05D009839 3.2e-21 105.9 112 48.2
TWI53G0910 Tripterygium wilfordii HOM05D007902 ORTHO05D009839 4.2e-21 105.5 141 46.1
SalBow5G2004 Salvia bowleyana HOM05D007902 ORTHO05D009839 5.4e-21 105.1 117 50.4
QL08p064506 Quercus lobata HOM05D007902 ORTHO05D009839 7.1e-21 104.8 118 48.3
Gohir.D13G005400 Gossypium hirsutum HOM05D007902 ORTHO05D009839 9.3e-21 104.4 116 50.0
Gorai.013G006100 Gossypium raimondii HOM05D007902 ORTHO05D009839 9.3e-21 104.4 116 50.0
Eucgr.G03123 Eucalyptus grandis HOM05D007902 ORTHO05D009839 6.0e-20 101.7 114 50.0
Nn2g10362 Nelumbo nucifera HOM05D007902 ORTHO05D009839 3.0e-19 99.4 110 46.4
arahy.Tifrunner.gnm1.ann1.0H4UJT Arachis hypogaea HOM05D007902 ORTHO05D009839 3.9e-19 99.0 119 44.5
arahy.Tifrunner.gnm1.ann1.C7E7HV Arachis hypogaea HOM05D007902 ORTHO05D009839 3.9e-19 99.0 119 44.5
CiPaw.01G304600 Carya illinoinensis HOM05D007902 ORTHO05D009839 6.6e-19 98.2 111 48.6
CANSAT56G3130 Cannabis sativa HOM05D007902 ORTHO05D009839 1.1e-18 97.4 113 49.6
TAR623G0347 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.5e-18 97.1 110 46.4
Ca_06023_v3 Cicer arietinum L. HOM05D007902 ORTHO05D009839 5.6e-18 95.1 115 44.3
Cpa.g.sc19.89 Carica papaya HOM05D007902 ORTHO05D009839 9.6e-18 94.4 117 42.7
Ciclev10032767m.g Citrus clementina HOM05D007902 ORTHO05D009839 1.6e-17 93.6 117 45.3
Haze_17334 Corylus avellana HOM05D007902 ORTHO05D009839 2.1e-17 93.2 121 43.8
BolC9t59901H Brassica oleracea HOM05D007902 ORTHO05D009839 3.6e-17 92.4 120 43.3
EL10Ac2g04265 Beta vulgaris HOM05D007902 ORTHO05D009839 1.1e-16 90.9 111 45.0
FvH4_7g25601 Fragaria vesca HOM05D007902 ORTHO05D009839 1.1e-16 90.9 118 42.4
C09p71380 Brassica napus HOM05D007902 ORTHO05D009839 1.4e-16 90.5 120 42.5
FAN03G2841 Fragaria x ananassa HOM05D001122 ORTHO05D001877 1.8e-16 90.1 118 42.4
BraA10t45132Z Brassica rapa HOM05D007902 ORTHO05D009839 9.0e-16 87.8 119 42.0
Medtr0191s0020 Medicago truncatula HOM05D007902 ORTHO05D009839 1.2e-15 87.4 123 41.5
Prupe.2G261300 Prunus persica HOM05D007902 ORTHO05D009839 2.0e-15 86.7 112 43.8
Sp6g37500 Schrenkiella parvula HOM05D007902 ORTHO05D009839 2.0e-15 86.7 118 45.8
FAN01G1070 Fragaria x ananassa HOM05D001122 ORTHO05D001877 2.6e-15 86.3 118 41.5
BcaC06g32241 Brassica carinata HOM05D007902 ORTHO05D009839 3.4e-15 85.9 120 41.7
Aqoxy4G02352 Aquilegia oxysepala HOM05D007902 ORTHO05D009839 4.5e-15 85.5 135 37.0
RcHm_v2.0_Chr1g0371741 Rosa chinensis HOM05D007902 ORTHO05D009839 5.8e-15 85.1 118 43.2
BcaC03g13156 Brassica carinata HOM05D007902 ORTHO05D009839 7.6e-15 84.7 113 42.5
Thhalv10014946m.g Eutrema salsugineum HOM05D007902 ORTHO05D009839 1.7e-14 83.6 120 43.3
MD01G1163300 Malus domestica HOM05D007902 ORTHO05D009839 2.2e-14 83.2 155 37.4
BcaB05g21722 Brassica carinata HOM05D007902 ORTHO05D009839 2.9e-14 82.8 114 43.9
C02p02280 Brassica napus HOM05D007902 ORTHO05D009839 2.9e-14 82.8 109 44.0
BolC2t06195H Brassica oleracea HOM05D007902 ORTHO05D009839 3.8e-14 82.4 113 42.5
BraA02t04842Z Brassica rapa HOM05D007902 ORTHO05D009839 6.4e-14 81.6 113 42.5
PGR142G4074 Punica granatum HOM05D007902 ORTHO05D009839 1.1e-13 80.9 144 34.0
Atru.chr12.150 Acer truncatum HOM05D005928 ORTHO05D007500 2.4e-13 79.7 138 37.7
Psat1g014880 Pisum sativum HOM05D007902 ORTHO05D009839 4.2e-13 79.0 110 42.7
Carub.0006s0425 Capsella rubella HOM05D007902 ORTHO05D009839 5.4e-13 78.6 121 42.1
AL6G15200 Arabidopsis lyrata HOM05D007902 ORTHO05D009839 7.1e-13 78.2 122 40.2
AT5G05330 Arabidopsis thaliana HOM05D007902 ORTHO05D009839 9.3e-13 77.8 122 41.0
CARHR207920 Cardamine hirsuta HOM05D007902 ORTHO05D009839 1.6e-12 77.0 122 41.8
Rhsim09G0183800 Rhododendron simsii HOM05D007902 ORTHO05D009839 2.1e-12 76.6 144 36.8
MD07G1231300 Malus domestica HOM05D007902 ORTHO05D009839 2.7e-12 76.3 113 40.7
PSO017G6410 Papaver somniferum HOM05D007902 ORTHO05D009839 2.7e-12 76.3 128 39.1
Hund13474 Selenicereus undatus HOM05D007902 ORTHO05D009839 3.5e-12 75.9 138 37.0
FAN06G1561 Fragaria x ananassa HOM05D007902 ORTHO05D009839 7.9e-12 74.7 118 39.0
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 1.3e-11 73.9 135 36.3
TAR623G0840 Trochodendron aralioides HOM05D007902 ORTHO05D009839 1.3e-11 73.9 76 51.3
LjContig00357g0001230 Lotus japonicus HOM05D007902 ORTHO05D009839 3.0e-11 72.8 125 35.2
PSO407G0011 Papaver somniferum HOM05D007902 ORTHO05D009839 3.0e-11 72.8 128 41.4
unitig_52.g16781 Utricularia gibba HOM05D007902 ORTHO05D009839 3.9e-11 72.4 102 40.2
Lj1C1068G17 Lonicera japonica HOM05D004500 ORTHO05D009839 1.1e-10 70.9 80 52.5
CDE07G0481 Ceratophyllum demersum HOM05D007902 ORTHO05D009839 4.3e-10 68.9 82 47.6
Sc10g0002880 Simmondsia chinensis HOM05D007902 ORTHO05D009839 1.4e-08 63.9 77 45.5
Oeu054429.1 Olea europaea HOM05D007902 ORTHO05D009839 2.4e-08 63.2 70 48.6
COL.COLO4_08802 Corchorus olitorius HOM05D000576 ORTHO05D000368 4.0e-08 62.4 56 55.4
BcaNung01853 Brassica carinata HOM05D003223 ORTHO05D014735 4.5e-07 58.9 53 56.6


User provided reference genes

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