Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400029012 Solanum tuberosum HOM05D005034 ORTHO05D006234 1.3e-96 356.3 173 100.0
CAN.G1045.13 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-92 342.8 173 96.0
CAN.G134.8 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-92 342.8 173 96.0
CAN.G1526.4 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-92 342.8 173 96.0
CAN.G278.5 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-92 342.8 173 96.0
CAN.G939.6 Capsicum annuum HOM05D005034 ORTHO05D006234 1.5e-92 342.8 173 96.0
CAN.G413.9 Capsicum annuum HOM05D005034 ORTHO05D006234 4.4e-92 341.3 172 95.9
Peaxi162Scf01164g00036 Petunia axillaris HOM05D005034 ORTHO05D006234 8.9e-85 317.0 173 90.2
CAN.G1431.1 Capsicum annuum HOM05D005034 ORTHO05D006234 9.9e-84 313.5 159 95.6
CAN.G424.20 Capsicum annuum HOM05D005034 ORTHO05D006234 9.9e-84 313.5 159 95.6
Lj2P1238T83 Lonicera japonica HOM05D005034 ORTHO05D006234 5.1e-80 301.2 175 85.7
CAN.G8.23 Capsicum annuum HOM05D005034 ORTHO05D006234 2.0e-76 289.3 173 83.8
SalBow1G5942 Salvia bowleyana HOM05D005034 ORTHO05D006234 6.4e-75 284.3 175 80.6
DCAR_032535 Daucus carota HOM05D005034 ORTHO05D006234 3.5e-73 278.5 184 77.2
PGR111G0056 Punica granatum HOM05D005034 ORTHO05D006234 1.7e-72 276.2 175 77.1
HanXRQChr02g0059701 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-72 275.4 185 76.8
HanXRQChr05g0152421 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-72 275.4 185 76.8
HanXRQChr06g0182991 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-72 275.4 185 76.8
HanXRQCPg0580361 Helianthus annuus HOM05D005034 ORTHO05D006234 3.0e-72 275.4 185 76.8
Sed0013321 Sechium edule HOM05D005034 ORTHO05D006234 1.1e-69 266.9 173 74.6
Nn064s42213 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.5e-68 263.1 175 76.0
Nn212s45210 Nelumbo nucifera HOM05D005034 ORTHO05D006234 1.5e-68 263.1 175 76.0
Gohir.1Z049831 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.5e-68 261.5 175 75.4
Gohir.A02G134200 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.5e-68 261.5 175 75.4
RcHm_v2.0_Chr5g0017241 Rosa chinensis HOM05D005034 ORTHO05D006234 4.5e-68 261.5 175 74.3
Gohir.D03G077700 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.4e-67 257.7 172 74.4
BraSC103t45426Z Brassica rapa HOM05D005034 ORTHO05D006234 1.4e-66 256.5 183 69.4
BraSC179t45777Z Brassica rapa HOM05D005034 ORTHO05D006234 1.4e-66 256.5 183 69.4
BraSC25t45907Z Brassica rapa HOM05D005034 ORTHO05D006234 1.4e-66 256.5 183 69.4
BraSC59t46548Z Brassica rapa HOM05D005034 ORTHO05D006234 1.4e-66 256.5 183 69.4
BolSC29t60503H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-66 255.8 183 69.4
BolSC35t60695H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-66 255.8 183 69.4
BolSC35t60701H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-66 255.8 183 69.4
BolSC37t60790H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-66 255.8 183 69.4
BolSC46t60961H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-66 255.8 183 69.4
BolSC47t61067H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-66 255.8 183 69.4
BolSC49t61140H Brassica oleracea HOM05D005034 ORTHO05D006234 2.4e-66 255.8 183 69.4
C07p33420 Brassica napus HOM05D005034 ORTHO05D006234 3.2e-66 255.4 183 69.4
C09p40380 Brassica napus HOM05D005034 ORTHO05D006234 3.2e-66 255.4 183 69.4
ATCG01040 Arabidopsis thaliana HOM05D005034 ORTHO05D006234 1.6e-65 253.1 183 68.9
PSO548G0041 Papaver somniferum HOM05D005034 ORTHO05D006234 2.1e-65 252.7 177 71.2
LjContig00318g0021446 Lotus japonicus HOM05D005034 ORTHO05D006234 3.5e-65 251.9 181 71.3
LjContig00319g0026028 Lotus japonicus HOM05D005034 ORTHO05D006234 3.5e-65 251.9 181 71.3
BolSC29t60543H Brassica oleracea HOM05D005034 ORTHO05D006234 7.9e-65 250.8 183 68.3
Medtr4g006130 Medicago truncatula HOM05D005034 ORTHO05D006234 7.9e-65 250.8 181 69.6
Sed0020615 Sechium edule HOM05D005034 ORTHO05D006234 7.9e-65 250.8 173 70.5
arahy.Tifrunner.gnm1.ann1.ZFUC3L Arachis hypogaea HOM05D005034 ORTHO05D006234 8.1e-62 240.7 181 68.0
HanXRQChr09g0258531 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-61 238.4 185 68.6
HanXRQChr11g0323731 Helianthus annuus HOM05D005034 ORTHO05D006234 4.0e-61 238.4 185 68.6
HanXRQChr17g0557781 Helianthus annuus HOM05D005034 ORTHO05D006234 4.9e-59 231.5 184 65.8
Lalb_Chr07g0191731 Lupinus albus HOM05D005034 ORTHO05D006234 5.1e-56 221.5 169 66.3
Gohir.D01G134300 Gossypium hirsutum HOM05D005034 ORTHO05D006234 6.7e-56 221.1 155 69.7
Sed0006489 Sechium edule HOM05D005034 ORTHO05D006234 6.7e-56 221.1 152 70.4
Solyc08g022180.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 4.3e-55 218.4 134 79.1
Oeu010692.1 Olea europaea HOM05D005034 ORTHO05D006234 5.0e-51 204.9 173 63.0
BraSC138t45537Z Brassica rapa HOM05D005034 ORTHO05D006234 1.1e-50 203.8 158 65.8
Gohir.D08G145250 Gossypium hirsutum HOM05D005034 ORTHO05D006234 4.2e-50 201.8 104 87.5
GSVIVG01004975001 Vitis vinifera HOM05D005034 ORTHO05D006234 9.3e-50 200.7 110 82.7
Phvul.002G050101 Phaseolus vulgaris HOM05D005034 ORTHO05D006234 7.9e-49 197.6 127 70.9
CSS0025903 Camellia sinensis var. sinensis HOM05D005034 ORTHO05D006234 1.0e-48 197.2 128 77.3
Ciclev10010882m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.3e-48 196.8 105 83.8
Ciclev10018423m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.3e-48 196.8 105 83.8
Ciclev10027633m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.3e-48 196.8 105 83.8
Ciclev10027652m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.3e-48 196.8 105 83.8
Ciclev10030457m.g Citrus clementina HOM05D005034 ORTHO05D006234 1.3e-48 196.8 105 83.8
CARHR178430 Cardamine hirsuta HOM05D005034 ORTHO05D006234 1.5e-47 193.4 120 73.3
Prupe.5G061000 Prunus persica HOM05D005034 ORTHO05D006234 3.3e-47 192.2 170 60.6
Gohir.A10G117233 Gossypium hirsutum HOM05D005034 ORTHO05D006234 2.2e-46 189.5 138 71.0
Gorai.009G333000 Gossypium raimondii HOM05D005034 ORTHO05D006234 3.7e-46 188.7 103 82.5
Gohir.D05G311850 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.1e-45 187.2 103 82.5
HanXRQChr00c0690g0576751 Helianthus annuus HOM05D005034 ORTHO05D006234 1.1e-45 187.2 173 59.0
Hma1.2p1_0201F.1_g086105 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 6.9e-45 184.5 90 92.2
Hma1.2p1_0201F.1_g086120 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 6.9e-45 184.5 90 92.2
HanXRQChr13g0413491 Helianthus annuus HOM05D005034 ORTHO05D006234 3.8e-43 178.7 130 73.8
HanXRQChr03g0073081 Helianthus annuus HOM05D005034 ORTHO05D006234 8.5e-43 177.6 177 59.3
Migut.D01256 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.9e-42 176.4 161 55.3
Eucgr.C03526 Eucalyptus grandis HOM05D005034 ORTHO05D006234 5.5e-42 174.9 125 70.4
MBI10_g47592_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 9.4e-42 174.1 132 68.2
Nn1g08156 Nelumbo nucifera HOM05D005034 ORTHO05D006234 2.1e-41 172.9 121 71.1
Pp3c2_30980 Physcomitrium patens HOM05D005034 ORTHO05D006234 1.4e-40 170.2 167 52.1
Gorai.003G181700 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.6e-36 156.0 76 88.2
HanXRQChr01g0020081 Helianthus annuus HOM05D005034 ORTHO05D006234 2.6e-36 156.0 79 86.1
Medtr4g006180 Medicago truncatula HOM05D005034 ORTHO05D006234 3.4e-36 155.6 151 55.6
Gohir.D03G171050 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.9e-34 149.8 76 85.5
BolSC45t60912H Brassica oleracea HOM05D005034 ORTHO05D006234 1.6e-33 146.7 123 62.6
Migut.L00236 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.6e-33 146.7 77 83.1
CAN.G1045.14 Capsicum annuum HOM05D005034 ORTHO05D006234 2.1e-33 146.4 77 96.1
Migut.L00237 Erythranthe guttata HOM05D005034 ORTHO05D006234 1.8e-32 143.3 77 80.5
Migut.L00238 Erythranthe guttata HOM05D005034 ORTHO05D006234 2.0e-31 139.8 70 87.1
MCO12G235 Micromonas commoda HOM05D005034 ORTHO05D006234 4.4e-31 138.7 184 40.8
HanXRQChr00c0504g0575291 Helianthus annuus HOM05D005034 ORTHO05D006234 3.7e-30 135.6 111 71.2
Eucgr.J01554 Eucalyptus grandis HOM05D005034 ORTHO05D006234 4.8e-30 135.2 69 85.5
Lalb_Chr23g0274781 Lupinus albus HOM05D005034 ORTHO05D006234 8.2e-30 134.4 138 55.1
PRCOL_00005002 Prasinoderma coloniale HOM05D005034 ORTHO05D006234 1.4e-29 133.7 101 55.4
Nitab4.5_0001130g0150 Nicotiana tabacum HOM05D005034 ORTHO05D006234 2.4e-29 132.9 67 92.5
Lsat_1_v5_gn_5_11321 Lactuca sativa HOM05D005034 ORTHO05D006234 3.1e-29 132.5 83 74.7
HanXRQChr00c0495g0575141 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-28 130.2 127 61.4
HanXRQChr08g0211991 Helianthus annuus HOM05D005034 ORTHO05D006234 1.5e-28 130.2 68 85.3
SMO086G0050 Selaginella moellendorffii HOM05D005034 ORTHO05D006234 8.5e-27 124.4 174 44.8
Gohir.D10G247550 Gossypium hirsutum HOM05D005034 ORTHO05D006234 1.2e-25 120.6 69 79.7
Gorai.011G286000 Gossypium raimondii HOM05D005034 ORTHO05D006234 1.8e-24 116.7 69 76.8
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.5e-23 113.6 110 56.4
Medtr0002s0180 Medicago truncatula HOM05D005034 ORTHO05D006234 7.5e-23 111.3 307 27.4
Gohir.D03G074401 Gossypium hirsutum HOM05D005034 ORTHO05D006234 3.1e-21 105.9 54 83.3
Gorai.002G058800 Gossypium raimondii HOM05D005034 ORTHO05D006234 2.0e-20 103.2 54 81.5
MBI19_g35567_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 2.6e-20 102.8 50 90.0
Hma1.2p1_0382F.1_g140190 Hydrangea macrophylla HOM05D005034 ORTHO05D006234 1.3e-19 100.5 53 86.8
HanXRQChr00c0718g0576991 Helianthus annuus HOM05D005034 ORTHO05D006234 2.2e-19 99.8 53 81.1
CAN.G262.6 Capsicum annuum HOM05D005034 ORTHO05D006234 4.2e-18 95.5 58 86.2
Psat0s8829g0120 Pisum sativum HOM05D005034 ORTHO05D006234 2.1e-17 93.2 44 86.4
Ciclev10013963m.g Citrus clementina HOM05D005034 ORTHO05D006234 6.1e-17 91.7 55 72.7
MBI10_g47591_MAGBIO Magnolia biondii HOM05D005034 ORTHO05D006234 5.7e-15 85.1 45 84.4
Solyc02g011730.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.4e-13 79.7 60 66.7
Potri.001G342966 Populus trichocarpa HOM05D005034 ORTHO05D006234 1.7e-11 73.6 79 53.2
Solyc00g500085.1 Solanum lycopersicum HOM05D005034 ORTHO05D006234 2.5e-10 69.7 40 95.0
Nitab4.5_0007979g0090 Nicotiana tabacum HOM05D005034 ORTHO05D006234 6.1e-09 65.1 108 42.6
Lj9P89T19 Lonicera japonica HOM05D005034 ORTHO05D006234 8.8e-08 61.2 46 80.4
Nitab4.5_0000100g0130 Nicotiana tabacum HOM05D005034 ORTHO05D006234 1.5e-07 60.5 30 96.7
HanXRQChr09g0251521 Helianthus annuus HOM05D005034 ORTHO05D006234 1.7e-06 57.0 81 55.6
arahy.Tifrunner.gnm1.ann1.A5A200 Arachis hypogaea HOM05D005034 ORTHO05D006234 3.7e-06 55.8 89 47.2
Psat5g168080 Pisum sativum HOM05D005034 ORTHO05D006234 4.9e-06 55.5 23 91.3


User provided reference genes

Program Settings