Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028994 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.2e-102 375.2 203 100.0
Solyc04g049660.3 Solanum lycopersicum HOM05D004771 ORTHO05D005565 2.4e-73 279.3 205 83.4
Sopen04g019850 Solanum pennellii HOM05D004771 ORTHO05D005565 2.1e-72 276.2 202 83.7
CAN.G490.38 Capsicum annuum HOM05D004771 ORTHO05D005565 9.5e-70 267.3 214 78.0
PGSC0003DMG400005017 Solanum tuberosum HOM05D004771 ORTHO05D005565 3.5e-64 248.8 195 79.5
CAN.G630.7 Capsicum annuum HOM05D004771 ORTHO05D005565 1.4e-57 226.9 196 74.5
Peaxi162Scf00170g00041 Petunia axillaris HOM05D004771 ORTHO05D005565 3.2e-57 225.7 202 70.3
Nitab4.5_0000575g0030 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.4e-52 209.5 197 67.5
Nitab4.5_0002078g0010 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.1e-48 196.4 195 63.6
Lj8P345T14 Lonicera japonica HOM05D004771 ORTHO05D005565 2.2e-34 149.8 156 54.5
CSS0030116 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 4.6e-32 142.1 133 61.7
Lj8C288T1 Lonicera japonica HOM05D004771 ORTHO05D005565 1.3e-31 140.6 139 56.1
CSS0010443 Camellia sinensis var. sinensis HOM05D004771 ORTHO05D005565 1.1e-30 137.5 134 60.4
GSVIVG01037017001 Vitis vinifera HOM05D004771 ORTHO05D005565 1.1e-30 137.5 199 51.8
Dinv22681 Davidia involucrata HOM05D004771 ORTHO05D005565 4.3e-30 135.6 127 62.2
GSVIVG01022390001 Vitis vinifera HOM05D004771 ORTHO05D005565 4.3e-30 135.6 151 58.3
Cpa.g.c27001.4 Carica papaya HOM05D004771 ORTHO05D005565 1.6e-29 133.7 203 51.7
Dinv44219 Davidia involucrata HOM05D000703 ORTHO05D000633 1.6e-29 133.7 138 58.7
COL.COLO4_17806 Corchorus olitorius HOM05D004771 ORTHO05D005565 2.1e-29 133.3 150 56.0
Ciclev10029331m.g Citrus clementina HOM05D004771 ORTHO05D005565 4.8e-29 132.1 200 48.0
Sed0002941 Sechium edule HOM05D004771 ORTHO05D005565 6.3e-29 131.7 133 58.6
Cc00_g19310 Coffea canephora HOM05D004771 ORTHO05D005565 1.1e-28 131.0 199 46.2
TAR628G1069 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.8e-28 130.2 135 57.0
Actinidia33010 Actinidia chinensis HOM05D004771 ORTHO05D005565 5.3e-28 128.6 133 57.1
TPR.G31901 Trifolium pratense HOM05D004771 ORTHO05D005565 9.0e-28 127.9 203 45.8
arahy.Tifrunner.gnm1.ann1.8327BB Arachis hypogaea HOM05D004771 ORTHO05D005565 1.2e-27 127.5 197 49.2
arahy.Tifrunner.gnm1.ann1.DYSV1F Arachis hypogaea HOM05D004771 ORTHO05D005565 1.2e-27 127.5 199 49.2
MSTRG.6635 Avicennia marina HOM05D004771 ORTHO05D005565 1.2e-27 127.5 205 46.3
QL11p028495 Quercus lobata HOM05D004771 ORTHO05D005565 1.5e-27 127.1 130 56.2
CiPaw.05G182000 Carya illinoinensis HOM05D004771 ORTHO05D005565 2.0e-27 126.7 145 55.2
Ciclev10029295m.g Citrus clementina HOM05D004771 ORTHO05D005565 3.4e-27 125.9 200 46.0
Haze_10334 Corylus avellana HOM05D004771 ORTHO05D005565 4.5e-27 125.6 153 54.9
Migut.M00048 Erythranthe guttata HOM05D004771 ORTHO05D005565 4.5e-27 125.6 205 45.4
PGR142G3141 Punica granatum HOM05D004771 ORTHO05D005565 4.5e-27 125.6 202 46.0
QL09p037751 Quercus lobata HOM05D004771 ORTHO05D005565 5.9e-27 125.2 198 46.5
THA.LOC104816989 Tarenaya hassleriana HOM05D004771 ORTHO05D005565 7.6e-27 124.8 134 56.0
Duzib132G0558 Durio zibethinus HOM05D004771 ORTHO05D005565 1.7e-26 123.6 204 48.5
Gohir.A01G180600 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.7e-26 123.6 131 57.3
RhsimUnG0159200 Rhododendron simsii HOM05D004771 ORTHO05D005565 2.2e-26 123.2 141 55.3
Potri.015G035700 Populus trichocarpa HOM05D004771 ORTHO05D005565 2.9e-26 122.9 134 55.2
Prupe.8G152600 Prunus persica HOM05D004771 ORTHO05D005565 2.9e-26 122.9 133 56.4
AUR62038158 Chenopodium quinoa HOM05D004771 ORTHO05D005565 5.0e-26 122.1 143 53.8
COL.COLO4_26627 Corchorus olitorius HOM05D004771 ORTHO05D005565 5.0e-26 122.1 130 56.9
EL10Ac7g16361 Beta vulgaris HOM05D004771 ORTHO05D005565 1.1e-25 120.9 135 53.3
Cc02_g28780 Coffea canephora HOM05D004771 ORTHO05D005565 1.1e-25 120.9 136 53.7
Glyma.20G137100 Glycine max HOM05D004771 ORTHO05D005565 1.1e-25 120.9 143 54.5
Thecc.02G032500 Theobroma cacao HOM05D004771 ORTHO05D005565 4.2e-25 119.0 202 48.0
Psat6g007560 Pisum sativum HOM05D004771 ORTHO05D005565 7.2e-25 118.2 209 44.0
Lalb_Chr02g0144821 Lupinus albus HOM05D004771 ORTHO05D005565 9.3e-25 117.9 142 50.0
AUR62009845 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.1e-24 116.7 159 47.2
TPR.G12006 Trifolium pratense HOM05D004771 ORTHO05D005565 2.1e-24 116.7 205 45.4
TWI14G0977 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 2.1e-24 116.7 128 56.2
Atru.chr4.2044 Acer truncatum HOM05D004771 ORTHO05D005565 2.7e-24 116.3 208 45.7
DCAR_027620 Daucus carota HOM05D004771 ORTHO05D005565 3.5e-24 115.9 161 49.1
MELO3C013897.2 Cucumis melo HOM05D004771 ORTHO05D005565 4.6e-24 115.5 142 51.4
TWI23G0030 Tripterygium wilfordii HOM05D004771 ORTHO05D005565 4.6e-24 115.5 201 46.8
MD10G1112800 Malus domestica HOM05D004771 ORTHO05D005565 7.9e-24 114.8 150 52.7
ClCG10G002170 Citrullus lanatus HOM05D004771 ORTHO05D005565 1.0e-23 114.4 147 51.7
Gohir.D01G171700 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.0e-23 114.4 199 45.7
TAR625G0649 Trochodendron aralioides HOM05D004771 ORTHO05D005565 1.0e-23 114.4 135 54.1
FAN24G0749 Fragaria x ananassa HOM05D004771 ORTHO05D005565 1.3e-23 114.0 131 51.9
Lj5g0002463 Lotus japonicus HOM05D004771 ORTHO05D005565 1.3e-23 114.0 157 48.4
Phvul.007G048400 Phaseolus vulgaris HOM05D004771 ORTHO05D005565 1.3e-23 114.0 144 54.2
Medtr1g009780 Medicago truncatula HOM05D004771 ORTHO05D005565 1.8e-23 113.6 208 44.7
unitig_899.g15063 Utricularia gibba HOM05D004771 ORTHO05D005565 1.8e-23 113.6 203 42.9
CsaV3_3G002260 Cucumis sativus L. HOM05D004771 ORTHO05D005565 2.3e-23 113.2 146 50.0
Manes.10G087700 Manihot esculenta HOM05D004771 ORTHO05D005565 2.3e-23 113.2 131 50.4
Aa31LG2G7800 Aethionema arabicum HOM05D004771 ORTHO05D005565 3.0e-23 112.8 133 51.9
Nn4g25002 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.0e-23 112.8 137 51.1
RcHm_v2.0_Chr6g0247751 Rosa chinensis HOM05D004771 ORTHO05D005565 3.0e-23 112.8 136 50.0
DCAR_007735 Daucus carota HOM05D004771 ORTHO05D005565 3.9e-23 112.5 151 48.3
Lsat_1_v5_gn_1_71561 Lactuca sativa HOM05D007128 ORTHO05D009059 3.9e-23 112.5 95 63.2
Gorai.002G213200 Gossypium raimondii HOM05D004771 ORTHO05D005565 5.1e-23 112.1 201 44.3
Cfa004725 Carpinus fangiana HOM05D004771 ORTHO05D005565 8.7e-23 111.3 201 44.8
PSO170G1616 Papaver somniferum HOM05D004771 ORTHO05D005565 8.7e-23 111.3 140 52.1
CANSAT56G2106 Cannabis sativa HOM05D004771 ORTHO05D005565 1.1e-22 110.9 176 45.5
CANSAT25G0049 Cannabis sativa HOM05D004771 ORTHO05D005565 2.5e-22 109.8 163 47.2
Hund20829 Selenicereus undatus HOM05D004771 ORTHO05D005565 2.5e-22 109.8 205 43.4
Aqoxy5G00826 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.3e-22 109.4 196 46.4
Eucgr.C02425 Eucalyptus grandis HOM05D004771 ORTHO05D005565 3.3e-22 109.4 209 41.6
Sc12g0010390 Simmondsia chinensis HOM05D004771 ORTHO05D005565 3.3e-22 109.4 177 46.3
Eucgr.I02508 Eucalyptus grandis HOM05D004771 ORTHO05D005565 4.3e-22 109.0 202 45.0
CDE05G2657 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 7.4e-22 108.2 179 43.0
Haze_04594 Corylus avellana HOM05D000399 ORTHO05D000304 7.4e-22 108.2 230 42.2
Lj6g0021608 Lotus japonicus HOM05D004771 ORTHO05D005565 7.4e-22 108.2 208 45.2
PSO528G0234 Papaver somniferum HOM05D004771 ORTHO05D005565 9.7e-22 107.8 139 49.6
Thhalv10019781m.g Eutrema salsugineum HOM05D004771 ORTHO05D005565 1.3e-21 107.5 130 47.7
SGA_v2.0_scaffold181G39690 Striga asiatica HOM05D004771 ORTHO05D005565 1.3e-21 107.5 119 53.8
MBI13_g09224_MAGBIO Magnolia biondii HOM05D004771 ORTHO05D005565 2.2e-21 106.7 146 47.9
CANSAT25G2974 Cannabis sativa HOM05D004771 ORTHO05D005565 2.8e-21 106.3 163 46.6
ECA248G2169 Erigeron canadensis HOM05D004771 ORTHO05D005565 2.8e-21 106.3 212 44.8
Aqoxy3G04244 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 3.7e-21 105.9 194 45.4
MD05G1109000 Malus domestica HOM05D004771 ORTHO05D005565 4.8e-21 105.5 156 48.7
HanXRQChr05g0160091 Helianthus annuus HOM05D004771 ORTHO05D005565 6.3e-21 105.1 202 43.1
AT1G71430 Arabidopsis thaliana HOM05D004771 ORTHO05D005565 4.1e-20 102.4 148 50.7
FvH4_2g02960 Fragaria vesca HOM05D004771 ORTHO05D005565 5.3e-20 102.1 194 40.7
Rhsim09G0033000 Rhododendron simsii HOM05D004771 ORTHO05D005565 6.9e-20 101.7 121 52.9
Aqoxy3G02687 Aquilegia oxysepala HOM05D004771 ORTHO05D005565 1.5e-19 100.5 192 44.3
PSO017G4159 Papaver somniferum HOM05D004771 ORTHO05D005565 1.5e-19 100.5 189 42.9
PSO170G1452 Papaver somniferum HOM05D004771 ORTHO05D005565 1.5e-19 100.5 193 42.0
AL2G31090 Arabidopsis lyrata HOM05D004771 ORTHO05D005565 4.5e-19 99.0 197 43.7
Ca_12871_v3 Cicer arietinum L. HOM05D004771 ORTHO05D005565 5.9e-19 98.6 186 43.5
vmacro05477 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 1.0e-18 97.8 86 66.3
BraA02t06780Z Brassica rapa HOM05D004771 ORTHO05D005565 1.7e-18 97.1 107 57.0
VMungo0720G1115 Vigna mungo HOM05D004771 ORTHO05D005565 1.7e-18 97.1 197 42.6
Aqoxy3G02689_Aqoxy3G02690 Aquilegia oxysepala HOM05D001377 ORTHO05D005565 2.2e-18 96.7 191 42.9
Nn2g15843 Nelumbo nucifera HOM05D004771 ORTHO05D005565 3.8e-18 95.9 195 41.0
arahy.Tifrunner.gnm1.ann1.ATP5C9 Arachis hypogaea HOM05D004771 ORTHO05D005565 6.5e-18 95.1 125 52.8
CARHR291250 Cardamine hirsuta HOM05D004771 ORTHO05D005565 8.5e-18 94.7 126 46.0
CDE02G0226 Ceratophyllum demersum HOM05D004771 ORTHO05D005565 1.1e-17 94.4 179 41.3
HPP92_002219 Vanilla planifolia HOM05D006274 ORTHO05D007782 1.1e-17 94.4 153 41.2
Medtr3g080910 Medicago truncatula HOM05D004771 ORTHO05D005565 1.4e-17 94.0 152 46.7
A07p37720 Brassica napus HOM05D004771 ORTHO05D005565 2.5e-17 93.2 80 63.8
BolC2t08948H Brassica oleracea HOM05D004771 ORTHO05D005565 2.5e-17 93.2 129 45.7
Carub.0002s1828 Capsella rubella HOM05D004771 ORTHO05D005565 2.5e-17 93.2 197 41.6
Nitab4.5_0001458g0040 Nicotiana tabacum HOM05D004771 ORTHO05D005565 2.5e-17 93.2 76 73.7
Sp5g26590 Schrenkiella parvula HOM05D004771 ORTHO05D005565 2.5e-17 93.2 80 63.8
C06p45590 Brassica napus HOM05D004771 ORTHO05D005565 3.2e-17 92.8 80 63.8
BolC6t39610H Brassica oleracea HOM05D004771 ORTHO05D005565 3.2e-17 92.8 80 63.8
SEGI_32093 Sequoiadendron giganteum HOM05D004771 ORTHO05D005565 3.2e-17 92.8 165 41.8
BcaC03g15291 Brassica carinata HOM05D004771 ORTHO05D005565 7.2e-17 91.7 126 50.0
C02p28980 Brassica napus HOM05D004771 ORTHO05D005565 7.2e-17 91.7 126 50.0
A02p17330 Brassica napus HOM05D004771 ORTHO05D005565 1.2e-16 90.9 135 52.6
SalBow7G1175 Salvia bowleyana HOM05D004771 ORTHO05D005565 1.2e-16 90.9 159 44.0
ATR0736G167 Amborella trichopoda HOM05D004771 ORTHO05D005565 2.1e-16 90.1 199 38.2
BraA07t31335Z Brassica rapa HOM05D004771 ORTHO05D005565 2.1e-16 90.1 192 39.6
BcaC02g09527 Brassica carinata HOM05D004771 ORTHO05D005565 2.7e-16 89.7 128 46.9
C04p43760 Brassica napus HOM05D004771 ORTHO05D005565 2.7e-16 89.7 128 46.9
BolC4t25958H Brassica oleracea HOM05D004771 ORTHO05D005565 2.7e-16 89.7 128 46.9
BcaB05g24668 Brassica carinata HOM05D004771 ORTHO05D005565 4.6e-16 89.0 154 47.4
Os01g0617800 Oryza sativa ssp. japonica HOM05D004771 ORTHO05D005565 1.0e-15 87.8 172 40.1
AUR62017723 Chenopodium quinoa HOM05D004771 ORTHO05D005565 2.3e-15 86.7 72 62.5
Sed0006388 Sechium edule HOM05D004771 ORTHO05D005565 3.9e-15 85.9 97 54.6
Manes.07G051000 Manihot esculenta HOM05D004771 ORTHO05D005565 5.1e-15 85.5 71 62.0
Oeu012349.1 Olea europaea HOM05D004771 ORTHO05D005565 2.0e-14 83.6 61 70.5
Zm00001eb002910 Zea mays HOM05D004771 ORTHO05D005565 1.3e-13 80.9 148 44.6
Zm00001eb003040 Zea mays HOM05D004771 ORTHO05D005565 1.3e-13 80.9 148 44.6
vmacro00584 Vaccinium macrocarpon HOM05D004771 ORTHO05D005565 2.8e-13 79.7 63 65.1
Zm00001eb159770 Zea mays HOM05D004771 ORTHO05D005565 4.8e-13 79.0 148 43.9
Gohir.D01G171500 Gossypium hirsutum HOM05D004771 ORTHO05D005565 1.2e-11 74.3 61 62.3
Glyma.10G254400 Glycine max HOM05D004771 ORTHO05D005565 5.9e-11 72.0 122 44.3
arahy.Tifrunner.gnm1.ann1.S1TJ9S Arachis hypogaea HOM05D004771 ORTHO05D005565 7.7e-11 71.6 118 48.3
HanXRQChr11g0345411 Helianthus annuus HOM05D004771 ORTHO05D005565 1.3e-10 70.9 246 34.1
Rhsim02G0173400 Rhododendron simsii HOM05D004771 ORTHO05D005565 8.5e-10 68.2 62 59.7
Mapoly0060s0029 Marchantia polymorpha HOM05D004771 ORTHO05D005565 4.2e-09 65.9 155 38.7
Lj9C712T7 Lonicera japonica HOM05D003887 ORTHO05D004523 1.6e-08 63.9 93 46.2
arahy.Tifrunner.gnm1.ann1.P0FJQ9 Arachis hypogaea HOM05D004771 ORTHO05D005565 2.7e-08 63.2 103 46.6
CARHR045930 Cardamine hirsuta HOM05D004771 ORTHO05D005565 6.7e-07 58.5 95 45.3
arahy.Tifrunner.gnm1.ann1.MQV2C0 Arachis hypogaea HOM05D004771 ORTHO05D005565 3.3e-06 56.2 124 41.9
SMO244G0085 Selaginella moellendorffii HOM05D004771 ORTHO05D005565 4.4e-06 55.8 102 39.2
Pp3c4_10090 Physcomitrium patens HOM05D004771 ORTHO05D005565 7.4e-06 55.1 175 33.7


User provided reference genes

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