Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028988 Solanum tuberosum HOM05D004722 ORTHO05D005453 4.5e-34 147.5 83 100.0
Sopen01g033320 Solanum pennellii HOM05D004722 ORTHO05D005453 1.0e-30 136.3 83 91.6
Nitab4.5_0000468g0090 Nicotiana tabacum HOM05D004722 ORTHO05D005453 2.8e-28 128.3 80 88.8
CAN.G129.50 Capsicum annuum HOM05D004722 ORTHO05D005453 1.8e-27 125.6 77 90.9
PGSC0003DMG400028984 Solanum tuberosum HOM05D004722 ORTHO05D005453 5.0e-25 117.5 81 81.5
Solyc01g073720.2 Solanum lycopersicum HOM05D004722 ORTHO05D005453 1.1e-24 116.3 82 79.3
Sopen01g033290 Solanum pennellii HOM05D004722 ORTHO05D005453 1.1e-24 116.3 82 80.5
Peaxi162Scf00402g00810 Petunia axillaris HOM05D004722 ORTHO05D005453 1.5e-24 115.9 80 85.0
Peaxi162Scf00245g00096 Petunia axillaris HOM05D004722 ORTHO05D005453 1.2e-23 112.8 80 76.2
Cc02_g26920 Coffea canephora HOM05D004722 ORTHO05D005453 6.3e-20 100.5 71 78.9
Nitab4.5_0009236g0010 Nicotiana tabacum HOM05D004722 ORTHO05D005453 8.2e-20 100.1 82 70.7
Cc02_g26900 Coffea canephora HOM05D004722 ORTHO05D005453 1.8e-19 99.0 83 72.3
SalBow4G0008 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.0e-17 93.2 69 73.9
MD02G1319500 Malus domestica HOM05D004722 ORTHO05D005453 2.2e-17 92.0 72 73.6
Migut.N01655 Erythranthe guttata HOM05D004722 ORTHO05D005453 2.9e-17 91.7 66 75.8
Nitab4.5_0002319g0020 Nicotiana tabacum HOM05D004722 ORTHO05D005453 5.0e-17 90.9 80 70.0
Oeu034890.1 Olea europaea HOM05D004722 ORTHO05D005453 1.5e-16 89.4 83 66.3
TAR633G0462 Trochodendron aralioides HOM05D004722 ORTHO05D005453 2.5e-16 88.6 66 71.2
Actinidia05843 Actinidia chinensis HOM05D004722 ORTHO05D005453 3.2e-16 88.2 66 78.8
MD00G1055400 Malus domestica HOM05D004722 ORTHO05D005453 3.2e-16 88.2 72 68.1
Prupe.2G002500 Prunus persica HOM05D004722 ORTHO05D005453 5.5e-16 87.4 66 72.7
SalBow4G0755 Salvia bowleyana HOM05D004722 ORTHO05D005453 5.5e-16 87.4 62 77.4
CSS0017159 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 7.2e-16 87.0 71 73.2
Potri.001G230900 Populus trichocarpa HOM05D004722 ORTHO05D005453 7.2e-16 87.0 69 71.0
PSO339G1234 Papaver somniferum HOM05D004722 ORTHO05D005453 9.4e-16 86.7 76 68.4
Sabra09G0015700 Salix brachista HOM05D004722 ORTHO05D005453 1.2e-15 86.3 70 68.6
vmacro13608 Vaccinium macrocarpon HOM05D004722 ORTHO05D005453 1.6e-15 85.9 73 67.1
CSS0018564 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.7e-15 85.1 71 71.8
Hma1.2p1_1373F.1_g278710 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.7e-15 85.1 65 73.8
Hma1.2p1_2663F.1_g326415 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.7e-15 85.1 65 73.8
Potri.009G024300 Populus trichocarpa HOM05D004722 ORTHO05D005453 2.7e-15 85.1 68 69.1
CSS0019299 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 3.6e-15 84.7 71 71.8
FAN01G1424 Fragaria x ananassa HOM05D000082 ORTHO05D005453 3.6e-15 84.7 71 73.2
Lsat_1_v5_gn_1_68380 Lactuca sativa HOM05D004722 ORTHO05D005453 3.6e-15 84.7 69 69.6
Sabra16G0138300 Salix brachista HOM05D004722 ORTHO05D005453 3.6e-15 84.7 69 69.6
Nn2g15722 Nelumbo nucifera HOM05D004722 ORTHO05D005453 6.1e-15 84.0 79 63.3
RcHm_v2.0_Chr1g0313231 Rosa chinensis HOM05D004722 ORTHO05D005453 6.1e-15 84.0 71 73.2
Rhsim13G0228000 Rhododendron simsii HOM05D004722 ORTHO05D005453 8.0e-15 83.6 77 59.7
RhsimUnG0154700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.0e-14 83.2 77 59.7
Haze_03270 Corylus avellana HOM05D004722 ORTHO05D005453 1.4e-14 82.8 78 59.0
Oeu032785.1 Olea europaea HOM05D004722 ORTHO05D005453 1.8e-14 82.4 78 62.8
Hma1.2p1_0541F.1_g174840 Hydrangea macrophylla HOM05D004722 ORTHO05D005453 2.3e-14 82.0 74 63.5
CARHR005060 Cardamine hirsuta HOM05D004722 ORTHO05D005453 3.0e-14 81.6 79 62.0
HanXRQChr11g0344951 Helianthus annuus HOM05D004722 ORTHO05D005453 3.0e-14 81.6 68 66.2
Manes.10G152300 Manihot esculenta HOM05D004722 ORTHO05D005453 3.0e-14 81.6 64 73.4
ECA236G3701 Erigeron canadensis HOM05D004722 ORTHO05D005453 4.0e-14 81.3 69 66.7
Thecc.09G215900 Theobroma cacao HOM05D004722 ORTHO05D005453 5.2e-14 80.9 76 61.8
CANSAT11G0834 Cannabis sativa HOM05D004722 ORTHO05D005453 6.8e-14 80.5 66 69.7
Cfa010708 Carpinus fangiana HOM05D004722 ORTHO05D005453 6.8e-14 80.5 78 57.7
HanXRQChr15g0480671 Helianthus annuus HOM05D004722 ORTHO05D005453 6.8e-14 80.5 76 65.8
BcaB02g06840 Brassica carinata HOM05D004722 ORTHO05D005453 8.8e-14 80.1 74 60.8
TWI60G0560 Tripterygium wilfordii HOM05D004722 ORTHO05D005453 1.2e-13 79.7 67 65.7
TAR636G1609 Trochodendron aralioides HOM05D004722 ORTHO05D005453 1.5e-13 79.3 66 66.7
Aa31LG1G19080 Aethionema arabicum HOM05D004722 ORTHO05D005453 2.0e-13 79.0 67 64.2
Atru.chr11.2706 Acer truncatum HOM05D004722 ORTHO05D005453 2.6e-13 78.6 66 65.2
Aqoxy2G00098 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.4e-13 78.2 73 60.3
Aqoxy3G01856 Aquilegia oxysepala HOM05D004722 ORTHO05D005453 3.4e-13 78.2 73 60.3
Sed0000285 Sechium edule HOM05D004722 ORTHO05D005453 3.4e-13 78.2 65 69.2
Thhalv10017532m.g Eutrema salsugineum HOM05D004722 ORTHO05D005453 4.4e-13 77.8 67 65.7
TAR636G0988 Trochodendron aralioides HOM05D004722 ORTHO05D005453 4.4e-13 77.8 66 65.2
MELO3C023928.2 Cucumis melo HOM05D004722 ORTHO05D005453 5.7e-13 77.4 65 69.2
AT1G05575 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 7.5e-13 77.0 78 57.7
PGR102G1407 Punica granatum HOM05D004722 ORTHO05D005453 7.5e-13 77.0 65 66.2
Sp4g14310 Schrenkiella parvula HOM05D004722 ORTHO05D005453 7.5e-13 77.0 67 65.7
THA.LOC104800946 Tarenaya hassleriana HOM05D004722 ORTHO05D005453 7.5e-13 77.0 74 64.9
BcaC02g11308 Brassica carinata HOM05D004722 ORTHO05D005453 9.8e-13 76.6 67 65.7
A05p13590 Brassica napus HOM05D004722 ORTHO05D005453 9.8e-13 76.6 67 65.7
C04p17690 Brassica napus HOM05D004722 ORTHO05D005453 9.8e-13 76.6 67 65.7
BolC4t23317H Brassica oleracea HOM05D004722 ORTHO05D005453 9.8e-13 76.6 67 65.7
BraA05t20296Z Brassica rapa HOM05D004722 ORTHO05D005453 9.8e-13 76.6 67 65.7
DCAR_029591 Daucus carota HOM05D004722 ORTHO05D005453 1.3e-12 76.3 73 63.0
Carub.0004s1325 Capsella rubella HOM05D004722 ORTHO05D005453 1.7e-12 75.9 67 65.7
ClCG10G012700 Citrullus lanatus HOM05D004722 ORTHO05D005453 1.7e-12 75.9 74 63.5
COL.COLO4_10444 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.7e-12 75.9 72 59.7
Phvul.005G042200 Phaseolus vulgaris HOM05D004722 ORTHO05D005453 1.7e-12 75.9 64 65.6
Ciclev10033110m.g Citrus clementina HOM05D004722 ORTHO05D005453 2.2e-12 75.5 79 59.5
BraA10t42701Z Brassica rapa HOM05D000875 ORTHO05D000684 3.7e-12 74.7 68 61.8
Carub.0001s0489 Capsella rubella HOM05D004722 ORTHO05D005453 3.7e-12 74.7 79 57.0
Cpa.g.sc189.2 Carica papaya HOM05D004722 ORTHO05D005453 3.7e-12 74.7 62 62.9
Psat1g129080 Pisum sativum HOM05D004722 ORTHO05D005453 3.7e-12 74.7 67 67.2
BcaC05g24363 Brassica carinata HOM05D004722 ORTHO05D005453 4.8e-12 74.3 74 60.8
Medtr2g061780 Medicago truncatula HOM05D004722 ORTHO05D005453 4.8e-12 74.3 65 66.2
AL1G15450 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 6.3e-12 73.9 75 56.0
TPR.G16145 Trifolium pratense HOM05D004722 ORTHO05D005453 6.3e-12 73.9 65 67.7
Gorai.013G005600 Gossypium raimondii HOM05D004722 ORTHO05D005453 8.3e-12 73.6 84 53.6
BolC5t29171H Brassica oleracea HOM05D004722 ORTHO05D005453 1.1e-11 73.2 70 58.6
Eucgr.B03635 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.1e-11 73.2 71 60.6
Gohir.A13G005400 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.4e-11 72.8 85 55.3
A10p04290 Brassica napus HOM05D004722 ORTHO05D005453 1.8e-11 72.4 70 57.1
BraA10t42697Z Brassica rapa HOM05D004722 ORTHO05D005453 1.8e-11 72.4 70 57.1
Rhsim07G0049700 Rhododendron simsii HOM05D004722 ORTHO05D005453 1.8e-11 72.4 82 56.1
Sed0020970 Sechium edule HOM05D004722 ORTHO05D005453 2.4e-11 72.0 62 67.7
AL4G27260 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.1e-11 71.2 67 61.2
AL80U10030 Arabidopsis lyrata HOM05D004722 ORTHO05D005453 4.1e-11 71.2 67 61.2
AT2G31945 Arabidopsis thaliana HOM05D004722 ORTHO05D005453 4.1e-11 71.2 67 61.2
arahy.Tifrunner.gnm1.ann1.3B9L35 Arachis hypogaea HOM05D004722 ORTHO05D005453 4.1e-11 71.2 72 58.3
GSVIVG01025254001 Vitis vinifera HOM05D004722 ORTHO05D005453 4.1e-11 71.2 69 59.4
CiPaw.13G035000 Carya illinoinensis HOM05D004722 ORTHO05D005453 5.4e-11 70.9 71 57.7
Lalb_Chr25g0283671 Lupinus albus HOM05D004722 ORTHO05D005453 5.4e-11 70.9 65 63.1
CSS0019909 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 9.1e-11 70.1 88 47.7
Duzib114G0602 Durio zibethinus HOM05D004722 ORTHO05D005453 1.2e-10 69.7 73 54.8
Glyma.15G268200 Glycine max HOM05D004722 ORTHO05D005453 1.2e-10 69.7 72 58.3
Ca_03203_v3 Cicer arietinum L. HOM05D004722 ORTHO05D005453 1.6e-10 69.3 65 64.6
CSS0030536 Camellia sinensis var. sinensis HOM05D004722 ORTHO05D005453 2.0e-10 68.9 65 60.0
Gohir.D13G005100 Gossypium hirsutum HOM05D004722 ORTHO05D005453 2.7e-10 68.6 84 51.2
HanXRQChr01g0021201 Helianthus annuus HOM05D004722 ORTHO05D005453 2.7e-10 68.6 61 63.9
Ciclev10017204m.g Citrus clementina HOM05D004722 ORTHO05D005453 3.5e-10 68.2 77 53.2
Potri.003G215300 Populus trichocarpa HOM05D004722 ORTHO05D005453 3.5e-10 68.2 73 58.9
Glyma.08G158100 Glycine max HOM05D004722 ORTHO05D005453 4.5e-10 67.8 72 59.7
PGR119G0776 Punica granatum HOM05D004722 ORTHO05D005453 4.5e-10 67.8 78 52.6
Nn7g35982 Nelumbo nucifera HOM05D004722 ORTHO05D005453 5.9e-10 67.4 76 56.6
Thecc.10G172000 Theobroma cacao HOM05D004722 ORTHO05D005453 5.9e-10 67.4 73 54.8
COL.COLO4_35454 Corchorus olitorius HOM05D004722 ORTHO05D005453 1.0e-09 66.6 72 56.9
DCAR_027044 Daucus carota HOM05D004722 ORTHO05D005453 1.0e-09 66.6 80 56.2
Eucgr.B02611 Eucalyptus grandis HOM05D004722 ORTHO05D005453 1.0e-09 66.6 79 57.0
DCAR_027045 Daucus carota HOM05D004722 ORTHO05D005453 1.7e-09 65.9 76 55.3
Gohir.A05G401550 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-09 65.9 78 51.3
Gohir.D04G014200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 1.7e-09 65.9 78 51.3
Gorai.012G016800 Gossypium raimondii HOM05D004722 ORTHO05D005453 1.7e-09 65.9 78 51.3
Lj3g0007026 Lotus japonicus HOM05D004722 ORTHO05D005453 6.5e-09 63.9 66 60.6
Zm00001eb100710 Zea mays HOM05D004722 ORTHO05D005453 6.5e-09 63.9 73 54.8
Potri.001G010600 Populus trichocarpa HOM05D004722 ORTHO05D005453 1.1e-08 63.2 86 48.8
Zm00001eb100700 Zea mays HOM05D004722 ORTHO05D005453 1.1e-08 63.2 73 54.8
DCAR_023306 Daucus carota HOM05D004722 ORTHO05D005453 1.5e-08 62.8 71 52.1
SalBow4G0140 Salvia bowleyana HOM05D004722 ORTHO05D005453 1.9e-08 62.4 59 62.7
Sc06g0004360 Simmondsia chinensis HOM05D004722 ORTHO05D005453 1.9e-08 62.4 67 56.7
Atru.chr3.2176 Acer truncatum HOM05D004722 ORTHO05D005453 2.5e-08 62.0 52 69.2
Atru.chr3.2177 Acer truncatum HOM05D004722 ORTHO05D005453 2.5e-08 62.0 62 59.7
MBI19_g17416_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 2.5e-08 62.0 72 51.4
EL10Ac4g09615 Beta vulgaris HOM05D004722 ORTHO05D005453 5.5e-08 60.8 72 50.0
ClCG09G003700 Citrullus lanatus HOM05D004722 ORTHO05D005453 5.5e-08 60.8 63 58.7
Prupe.6G012500 Prunus persica HOM05D004722 ORTHO05D005453 5.5e-08 60.8 67 52.2
Lalb_Chr01g0014951 Lupinus albus HOM05D004722 ORTHO05D005453 9.4e-08 60.1 65 53.8
Sed0018607 Sechium edule HOM05D004722 ORTHO05D005453 9.4e-08 60.1 70 52.9
MBI19_g17417_MAGBIO Magnolia biondii HOM05D004722 ORTHO05D005453 1.2e-07 59.7 60 55.0
Os09g0446700 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 1.2e-07 59.7 65 60.0
Zm00001eb193270 Zea mays HOM05D004722 ORTHO05D005453 2.1e-07 58.9 72 52.8
Ah.06g190970 Amaranthus hybridus HOM05D004722 ORTHO05D005453 8.0e-07 57.0 80 46.2
Os02g0774200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 8.0e-07 57.0 76 48.7
RcHm_v2.0_Chr5g0081201 Rosa chinensis HOM05D004722 ORTHO05D005453 8.0e-07 57.0 66 51.5
Zm00001eb373570 Zea mays HOM05D004722 ORTHO05D005453 8.0e-07 57.0 59 54.2
FvH4_3g44500 Fragaria vesca HOM05D004722 ORTHO05D005453 1.0e-06 56.6 68 52.9
FAN11G3093 Fragaria x ananassa HOM05D004722 ORTHO05D005453 1.0e-06 56.6 68 52.9
EL10Ac4g09614 Beta vulgaris HOM05D004722 ORTHO05D005453 1.4e-06 56.2 57 49.1
Os06g0207200 Oryza sativa ssp. japonica HOM05D004722 ORTHO05D005453 3.0e-06 55.1 61 54.1
EL10Ac4g09616 Beta vulgaris HOM05D004722 ORTHO05D005453 4.0e-06 54.7 73 43.8
HPP92_023476 Vanilla planifolia HOM05D004722 ORTHO05D005453 4.0e-06 54.7 73 52.1
MD11G1015000 Malus domestica HOM05D004722 ORTHO05D005453 5.2e-06 54.3 59 54.2
ATR0598G063 Amborella trichopoda HOM05D004722 ORTHO05D005453 6.8e-06 53.9 64 59.4
Gohir.A10G182200 Gossypium hirsutum HOM05D004722 ORTHO05D005453 8.8e-06 53.5 72 50.0
MD03G1011900 Malus domestica HOM05D004722 ORTHO05D005453 8.8e-06 53.5 57 56.1
HPP92_023456 Vanilla planifolia HOM05D004722 ORTHO05D005453 8.8e-06 53.5 73 52.1


User provided reference genes

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