Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028978 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.3e-202 709.5 362 100.0
Solyc01g073670.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 3.3e-182 641.7 452 76.5
Sopen01g033230 Solanum pennellii HOM05D004544 ORTHO05D005504 1.3e-181 639.8 452 76.3
CAN.G1361.4 Capsicum annuum HOM05D004544 ORTHO05D005504 1.8e-175 619.4 452 73.7
Peaxi162Scf00402g00940 Petunia axillaris HOM05D004544 ORTHO05D005504 1.5e-158 563.1 444 67.6
Peaxi162Scf00245g00710 Petunia axillaris HOM05D004544 ORTHO05D005504 4.4e-126 455.3 452 55.5
CAN.G928.1 Capsicum annuum HOM05D004544 ORTHO05D005504 2.5e-121 439.5 446 54.7
Sopen10g026790 Solanum pennellii HOM05D004544 ORTHO05D005504 2.0e-118 429.9 446 52.5
PGSC0003DMG400007701 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.5e-97 360.5 387 53.2
CSS0044763 Camellia sinensis var. sinensis HOM05D004544 ORTHO05D005504 7.3e-97 358.2 454 44.9
GSVIVG01001349001 Vitis vinifera HOM05D004544 ORTHO05D005504 1.2e-96 357.5 450 45.1
Cc02_g26820 Coffea canephora HOM05D004544 ORTHO05D005504 1.6e-96 357.1 454 45.2
Oeu060709.1 Olea europaea HOM05D004544 ORTHO05D005504 1.8e-95 353.6 444 44.8
Rhsim07G0049300 Rhododendron simsii HOM05D004544 ORTHO05D005504 1.8e-95 353.6 449 45.2
Sopen01g033220 Solanum pennellii HOM05D004544 ORTHO05D005504 5.2e-95 352.1 456 44.1
Solyc01g073660.3 Solanum lycopersicum HOM05D004544 ORTHO05D005504 7.6e-94 348.2 456 43.4
Actinidia05839 Actinidia chinensis HOM05D004544 ORTHO05D005504 7.1e-92 341.7 449 43.9
SGA_v2.0_scaffold260G45890 Striga asiatica HOM05D004544 ORTHO05D005504 1.6e-91 340.5 479 40.5
Nn7g35919 Nelumbo nucifera HOM05D004544 ORTHO05D005504 2.1e-91 340.1 455 42.6
CAN.G1361.5 Capsicum annuum HOM05D004544 ORTHO05D005504 1.3e-90 337.4 454 42.5
DCAR_024995 Daucus carota HOM05D004544 ORTHO05D005504 1.3e-90 337.4 455 42.4
unitig_749.g13487 Utricularia gibba HOM05D004544 ORTHO05D005504 1.3e-90 337.4 463 42.1
TAR633G2617 Trochodendron aralioides HOM05D004544 ORTHO05D005504 1.7e-90 337.0 444 42.6
vmacro22467 Vaccinium macrocarpon HOM05D004544 ORTHO05D005504 1.7e-90 337.0 463 42.3
AUR62035404 Chenopodium quinoa HOM05D004544 ORTHO05D005504 2.3e-90 336.7 458 43.4
EL10Ac1g02232 Beta vulgaris HOM05D004544 ORTHO05D005504 6.6e-90 335.1 453 43.5
EL10Ac1g02233 Beta vulgaris HOM05D004544 ORTHO05D005504 6.6e-90 335.1 453 43.5
Dinv43503 Davidia involucrata HOM05D004544 ORTHO05D005504 1.5e-89 334.0 444 42.8
HanXRQChr04g0117441 Helianthus annuus HOM05D004544 ORTHO05D005504 3.3e-89 332.8 446 41.7
MBI01_g14445_MAGBIO Magnolia biondii HOM05D004544 ORTHO05D005504 9.6e-89 331.3 461 42.3
Nn2g15791 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.6e-88 330.5 453 41.7
Sc03g0003850 Simmondsia chinensis HOM05D004544 ORTHO05D005504 1.1e-87 327.8 460 43.0
Cfa010700 Carpinus fangiana HOM05D004544 ORTHO05D005504 2.4e-87 326.6 455 41.3
Hma1.2p1_0128F.1_g059850 Hydrangea macrophylla HOM05D004544 ORTHO05D005504 2.4e-87 326.6 413 43.8
Ciclev10031412m.g Citrus clementina HOM05D004544 ORTHO05D005504 3.1e-87 326.2 465 39.6
SalBow5G3691 Salvia bowleyana HOM05D004544 ORTHO05D005504 5.3e-87 325.5 469 39.9
ECA236G1315 Erigeron canadensis HOM05D004544 ORTHO05D005504 2.0e-86 323.6 440 40.7
CiPaw.13G000600 Carya illinoinensis HOM05D004544 ORTHO05D005504 4.5e-86 322.4 453 41.7
Thecc.08G193200 Theobroma cacao HOM05D004544 ORTHO05D005504 7.6e-86 321.6 453 40.8
PSO170G0355 Papaver somniferum HOM05D004544 ORTHO05D005504 1.3e-85 320.9 445 41.1
Potri.001G232100 Populus trichocarpa HOM05D004544 ORTHO05D005504 1.3e-85 320.9 456 40.4
PSO063G0048 Papaver somniferum HOM05D004544 ORTHO05D005504 2.2e-85 320.1 445 41.1
Atru.chr12.1432 Acer truncatum HOM05D004544 ORTHO05D005504 2.9e-85 319.7 453 40.2
Carub.0005s2680 Capsella rubella HOM05D004544 ORTHO05D005504 2.9e-85 319.7 456 40.6
TWI09G1596 Tripterygium wilfordii HOM05D004544 ORTHO05D005504 2.9e-85 319.7 452 39.6
Lalb_Chr25g0283741 Lupinus albus HOM05D004544 ORTHO05D005504 8.4e-85 318.2 455 41.3
Gorai.004G035000 Gossypium raimondii HOM05D004544 ORTHO05D005504 1.1e-84 317.8 452 40.3
Nn2g15790 Nelumbo nucifera HOM05D004544 ORTHO05D005504 1.9e-84 317.0 442 40.7
MD02G1320400 Malus domestica HOM05D004544 ORTHO05D005504 2.4e-84 316.6 441 41.5
Potri.009G024600 Populus trichocarpa HOM05D004544 ORTHO05D005504 2.4e-84 316.6 451 39.2
FAN01G0284 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.2e-84 316.2 448 40.6
FvH4_c5g00010 Fragaria vesca HOM05D004544 ORTHO05D005504 4.2e-84 315.8 448 40.4
Gohir.D08G037000 Gossypium hirsutum HOM05D004544 ORTHO05D005504 4.2e-84 315.8 452 40.0
A04p01890 Brassica napus HOM05D004544 ORTHO05D005504 1.2e-83 314.3 459 40.1
PGSC0003DMG400031131 Solanum tuberosum HOM05D004544 ORTHO05D005504 1.6e-83 313.9 456 40.8
TAR633G0112 Trochodendron aralioides HOM05D004544 ORTHO05D005504 2.1e-83 313.5 314 51.6
Glyma.08G158600 Glycine max HOM05D004544 ORTHO05D005504 4.6e-83 312.4 447 40.5
arahy.Tifrunner.gnm1.ann1.HLF3VC Arachis hypogaea HOM05D004544 ORTHO05D005504 7.9e-83 311.6 482 39.4
arahy.Tifrunner.gnm1.ann1.ZSC88Q Arachis hypogaea HOM05D004544 ORTHO05D005504 7.9e-83 311.6 482 39.4
AUR62041888 Chenopodium quinoa HOM05D004544 ORTHO05D005504 7.9e-83 311.6 315 53.0
Thhalv10005961m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 7.9e-83 311.6 456 40.1
Peaxi162Scf00402g00941 Petunia axillaris HOM05D004544 ORTHO05D005504 7.9e-83 311.6 452 41.4
RcHm_v2.0_Chr1g0313141 Rosa chinensis HOM05D004544 ORTHO05D005504 7.9e-83 311.6 448 39.7
Sp4g26350 Schrenkiella parvula HOM05D004544 ORTHO05D005504 7.9e-83 311.6 457 39.8
CDE05G1716 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 1.0e-82 311.2 479 39.5
Eucgr.E04336 Eucalyptus grandis HOM05D004544 ORTHO05D005504 1.0e-82 311.2 449 39.6
Aqoxy1G00422 Aquilegia oxysepala HOM05D004544 ORTHO05D005504 1.3e-82 310.8 449 40.1
BcaB02g08195 Brassica carinata HOM05D004544 ORTHO05D005504 1.3e-82 310.8 455 39.8
BraA04t15912Z Brassica rapa HOM05D004544 ORTHO05D005504 1.3e-82 310.8 457 39.4
Duzib068G1099 Durio zibethinus HOM05D004544 ORTHO05D005504 1.8e-82 310.5 453 40.4
AL4G43240 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 2.3e-82 310.1 447 39.1
C04p32650 Brassica napus HOM05D004544 ORTHO05D005504 2.3e-82 310.1 455 39.3
Thhalv10001436m.g Eutrema salsugineum HOM05D004544 ORTHO05D005504 3.9e-82 309.3 456 39.0
AT2G44280 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 6.7e-82 308.5 455 38.7
BcaC02g10108 Brassica carinata HOM05D004544 ORTHO05D005504 6.7e-82 308.5 455 39.1
Ca_03221_v3 Cicer arietinum L. HOM05D004544 ORTHO05D005504 8.7e-82 308.1 454 39.9
A05p04480 Brassica napus HOM05D004544 ORTHO05D005504 1.1e-81 307.8 456 39.0
AL5G42260 Arabidopsis lyrata HOM05D004544 ORTHO05D005504 1.5e-81 307.4 455 39.1
AT3G60070 Arabidopsis thaliana HOM05D004544 ORTHO05D005504 1.5e-81 307.4 454 39.2
CANSAT11G0055 Cannabis sativa HOM05D004544 ORTHO05D005504 1.5e-81 307.4 457 39.4
CARHR139460 Cardamine hirsuta HOM05D004544 ORTHO05D005504 1.9e-81 307.0 451 38.8
CsaV3_7G031530 Cucumis sativus L. HOM05D004544 ORTHO05D005504 1.9e-81 307.0 444 39.2
Gohir.A08G026600 Gossypium hirsutum HOM05D004544 ORTHO05D005504 1.9e-81 307.0 429 40.3
A04p33250 Brassica napus HOM05D004544 ORTHO05D005504 2.5e-81 306.6 456 39.0
BraA04t18786Z Brassica rapa HOM05D004544 ORTHO05D005504 2.5e-81 306.6 456 39.0
BraA05t19424Z Brassica rapa HOM05D004544 ORTHO05D005504 3.3e-81 306.2 456 39.0
Glyma.15G267700 Glycine max HOM05D004544 ORTHO05D005504 4.3e-81 305.8 454 40.1
BcaNung06603 Brassica carinata HOM05D004544 ORTHO05D005504 5.6e-81 305.4 456 39.0
BolC4t22159H Brassica oleracea HOM05D004544 ORTHO05D005504 5.6e-81 305.4 456 39.0
CDE04G3336 Ceratophyllum demersum HOM05D004544 ORTHO05D005504 5.6e-81 305.4 442 41.0
BcaB02g08807 Brassica carinata HOM05D004544 ORTHO05D005504 7.4e-81 305.1 456 38.6
BolC4t24833H Brassica oleracea HOM05D004544 ORTHO05D005504 7.4e-81 305.1 456 38.8
Medtr2g062270 Medicago truncatula HOM05D004544 ORTHO05D005504 7.4e-81 305.1 458 40.6
VMungo1080G0174 Vigna mungo HOM05D004544 ORTHO05D005504 7.4e-81 305.1 454 38.8
C04p05190 Brassica napus HOM05D004544 ORTHO05D005504 9.6e-81 304.7 456 38.8
BolC4t28598H Brassica oleracea HOM05D004544 ORTHO05D005504 9.6e-81 304.7 456 39.0
THA.LOC104817137 Tarenaya hassleriana HOM05D004544 ORTHO05D005504 1.6e-80 303.9 449 39.6
PGR031G1320 Punica granatum HOM05D004544 ORTHO05D005504 2.1e-80 303.5 451 39.5
Phvul.005G042600 Phaseolus vulgaris HOM05D004544 ORTHO05D005504 2.8e-80 303.1 454 38.5
Carub.0004s2687 Capsella rubella HOM05D004544 ORTHO05D005504 4.8e-80 302.4 447 38.9
Sp5g03140 Schrenkiella parvula HOM05D004544 ORTHO05D005504 6.2e-80 302.0 458 40.0
Lj3g0003623 Lotus japonicus HOM05D004544 ORTHO05D005504 1.8e-79 300.4 455 39.1
Prupe.2G001700 Prunus persica HOM05D004544 ORTHO05D005504 1.8e-79 300.4 315 50.5
Sed0009480 Sechium edule HOM05D004544 ORTHO05D005504 1.8e-79 300.4 445 39.1
Os07g0578200 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 1.2e-78 297.7 451 41.2
Psat1g129360 Pisum sativum HOM05D004544 ORTHO05D005504 1.2e-78 297.7 453 40.6
HPP92_012523 Vanilla planifolia HOM05D004544 ORTHO05D005504 1.2e-78 297.7 448 39.1
TPR.G16160 Trifolium pratense HOM05D004544 ORTHO05D005504 2.6e-78 296.6 445 40.7
Aa31LG1G25900 Aethionema arabicum HOM05D004544 ORTHO05D005504 7.6e-78 295.0 476 37.6
Os03g0168000 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 9.9e-78 294.7 450 37.6
C04p70950 Brassica napus HOM05D004544 ORTHO05D005504 3.8e-77 292.7 483 36.9
ClCG09G003650 Citrullus lanatus HOM05D004544 ORTHO05D005504 8.4e-77 291.6 486 36.6
Zm00001eb402450 Zea mays HOM05D004544 ORTHO05D005504 4.2e-76 289.3 446 38.6
Nitab4.5_0000468g0180 Nicotiana tabacum HOM05D004544 ORTHO05D005504 7.1e-76 288.5 408 42.4
Aa31LG10G14230 Aethionema arabicum HOM05D004544 ORTHO05D005504 1.2e-75 287.7 434 39.4
Lsat_1_v5_gn_7_33840 Lactuca sativa HOM05D004544 ORTHO05D005504 4.6e-75 285.8 388 42.3
Zm00001eb325500 Zea mays HOM05D004544 ORTHO05D005504 1.3e-74 284.3 469 39.0
ATR0001G054 Amborella trichopoda HOM05D004544 ORTHO05D005504 1.8e-74 283.9 399 41.6
Cpa.g.c29747 Carica papaya HOM05D004544 ORTHO05D005504 1.8e-74 283.9 397 40.3
BcaB06g29367 Brassica carinata HOM05D004544 ORTHO05D005504 2.3e-74 283.5 477 37.1
Manes.10G153000 Manihot esculenta HOM05D004544 ORTHO05D005504 3.3e-73 279.6 413 40.0
Nitab4.5_0004502g0040 Nicotiana tabacum HOM05D004544 ORTHO05D005504 3.1e-71 273.1 361 42.9
Haze_03276 Corylus avellana HOM05D004544 ORTHO05D005504 5.5e-68 262.3 404 40.1
PGSC0003DMG400023279 Solanum tuberosum HOM05D004544 ORTHO05D005504 3.0e-66 256.5 373 44.0
AagrBONN_evm.TU.Sc2ySwM_368.1671 Anthoceros agrestis HOM05D004544 ORTHO05D005504 5.1e-66 255.8 425 36.0
CARHR170380 Cardamine hirsuta HOM05D004544 ORTHO05D005504 4.1e-63 246.1 291 45.4
Mapoly0020s0019 Marchantia polymorpha HOM05D004544 ORTHO05D005504 1.3e-61 241.1 451 33.7
SMO353G0186 Selaginella moellendorffii HOM05D004544 ORTHO05D005504 1.1e-60 238.0 383 36.8
Pp3c17_11410 Physcomitrium patens HOM05D004544 ORTHO05D005504 1.9e-60 237.3 466 33.5
FAN01G0042 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.3e-53 214.5 418 33.7
Sabra09G0016300 Salix brachista HOM05D004544 ORTHO05D005504 2.7e-51 206.8 312 40.7
FAN01G3148 Fragaria x ananassa HOM05D004544 ORTHO05D005504 3.9e-50 203.0 348 36.5
MELO3C023501.2 Cucumis melo HOM05D004544 ORTHO05D005504 2.4e-47 193.7 353 35.1
SEGI_18579 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 8.0e-43 178.7 195 50.3
Atru.chr11.2714 Acer truncatum HOM05D004544 ORTHO05D005504 3.0e-42 176.8 435 29.9
Migut.B01408 Erythranthe guttata HOM05D004544 ORTHO05D005504 3.9e-42 176.4 158 55.7
QL04p001975 Quercus lobata HOM05D004544 ORTHO05D005504 2.0e-38 164.1 178 46.1
QL04p001964 Quercus lobata HOM05D004544 ORTHO05D005504 1.4e-34 151.4 286 32.9
SEGI_30614 Sequoiadendron giganteum HOM05D004544 ORTHO05D005504 5.0e-29 132.9 253 32.0
Migut.B01409 Erythranthe guttata HOM05D004544 ORTHO05D005504 8.0e-27 125.6 135 51.9
Nitab4.5_0000468g0200 Nicotiana tabacum HOM05D004544 ORTHO05D283929 1.8e-23 114.4 293 37.2
Actinidia31717 Actinidia chinensis HOM05D004544 ORTHO05D005504 9.1e-23 112.1 118 50.8
MELO3C000237.2 Cucumis melo HOM05D004544 ORTHO05D005504 9.1e-23 112.1 121 46.3
Lj7A562T25 Lonicera japonica HOM05D004544 ORTHO05D005504 9.1e-23 112.1 111 55.0
Psat2g024040 Pisum sativum HOM05D004544 ORTHO05D005504 2.9e-21 107.1 134 42.5
FAN06G4582 Fragaria x ananassa HOM05D004544 ORTHO05D005504 1.8e-18 97.8 269 28.3
Os06g0628032 Oryza sativa ssp. japonica HOM05D004544 ORTHO05D005504 2.3e-18 97.4 99 47.5
QL04p001512 Quercus lobata HOM05D004544 ORTHO05D001929 5.4e-15 86.3 72 54.2
Zm00001eb107640 Zea mays HOM05D004544 ORTHO05D005504 1.8e-10 71.2 186 28.5
Actinidia31716 Actinidia chinensis HOM05D004544 ORTHO05D005504 4.0e-10 70.1 47 68.1
Hund18992 Selenicereus undatus HOM05D004544 ORTHO05D005504 4.0e-10 70.1 49 59.2
Glyma.20G091501 Glycine max HOM05D004544 ORTHO05D005504 8.9e-10 68.9 56 58.9
Migut.B01407 Erythranthe guttata HOM05D004544 ORTHO05D005504 1.5e-09 68.2 43 67.4
QL04p001505 Quercus lobata HOM05D004544 ORTHO05D005504 3.7e-08 63.5 60 46.7
CAN.G913.7 Capsicum annuum HOM05D004544 ORTHO05D005504 9.2e-07 58.9 63 50.8


User provided reference genes

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