Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028823 Solanum tuberosum HOM05D004304 ORTHO05D005229 1.1e-71 273.1 128 100.0
Solyc12g006160.2 Solanum lycopersicum HOM05D004304 ORTHO05D005229 1.9e-71 272.3 128 98.4
Sopen12g002110 Solanum pennellii HOM05D004304 ORTHO05D005229 1.9e-71 272.3 128 98.4
CAN.G294.16 Capsicum annuum HOM05D004304 ORTHO05D005229 1.3e-69 266.2 128 95.3
Nitab4.5_0001229g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.6e-67 259.2 127 94.5
Nitab4.5_0005511g0040 Nicotiana tabacum HOM05D004304 ORTHO05D005229 1.6e-67 259.2 127 94.5
Manes.12G061000 Manihot esculenta HOM05D004304 ORTHO05D005229 1.4e-66 256.1 126 93.7
CAN.G854.8 Capsicum annuum HOM05D004304 ORTHO05D005229 1.8e-66 255.8 126 92.9
Ciclev10017178m.g Citrus clementina HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 92.9
MD17G1113700 Malus domestica HOM05D004304 ORTHO05D005229 2.4e-66 255.4 126 92.9
Nitab4.5_0004642g0020 Nicotiana tabacum HOM05D004304 ORTHO05D005229 3.1e-66 255.0 126 93.7
MD09G1123200 Malus domestica HOM05D004304 ORTHO05D005229 4.0e-66 254.6 126 92.9
Nitab4.5_0000441g0110 Nicotiana tabacum HOM05D004304 ORTHO05D005229 4.0e-66 254.6 126 92.9
Thecc.01G191600 Theobroma cacao HOM05D004304 ORTHO05D005229 5.3e-66 254.2 126 92.1
CSS0022075 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 1.2e-65 253.1 126 91.3
Actinidia21445 Actinidia chinensis HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.1
FvH4_6g40920 Fragaria vesca HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.1
FAN05G0096 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.1
Prupe.3G200700 Prunus persica HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.1
RcHm_v2.0_Chr2g0156501 Rosa chinensis HOM05D004304 ORTHO05D005229 1.5e-65 252.7 126 92.1
Sopen07g024320 Solanum pennellii HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
PGSC0003DMG400006152 Solanum tuberosum HOM05D004304 ORTHO05D005229 2.0e-65 252.3 126 92.1
CANSAT64G1042 Cannabis sativa HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 91.3
AUR62017517 Chenopodium quinoa HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 90.5
Cc00_g07360 Coffea canephora HOM05D004304 ORTHO05D005229 2.6e-65 251.9 126 91.3
Duzib133G1241 Durio zibethinus HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 91.3
PGR042G2803 Punica granatum HOM05D004304 ORTHO05D005229 3.4e-65 251.5 126 90.5
Atru.chr6.3369 Acer truncatum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
FAN02G3860 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
FAN09G2975 Fragaria x ananassa HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
Gohir.A11G149700 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
Gohir.D11G156380 Gossypium hirsutum HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
Gorai.007G166800 Gossypium raimondii HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 91.3
vmacro12102 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 88.9
GSVIVG01030050001 Vitis vinifera HOM05D004304 ORTHO05D005229 4.5e-65 251.1 126 92.1
HanXRQChr03g0075261 Helianthus annuus HOM05D004304 ORTHO05D005229 5.8e-65 250.8 126 90.5
CSS0042456 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 7.6e-65 250.4 126 91.3
ClCG02G009350 Citrullus lanatus HOM05D004304 ORTHO05D005229 7.6e-65 250.4 126 91.3
Sed0000663 Sechium edule HOM05D004304 ORTHO05D005229 7.6e-65 250.4 126 91.3
THA.LOC104819042 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 7.6e-65 250.4 126 91.3
Dinv07865 Davidia involucrata HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 89.7
Gohir.A07G087600 Gossypium hirsutum HOM05D004304 ORTHO05D005229 9.9e-65 250.0 126 90.5
FAN14G5814 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.3e-64 249.6 126 91.3
Duzib138G0739 Durio zibethinus HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.9
Duzib138G1664 Durio zibethinus HOM05D004304 ORTHO05D005229 1.7e-64 249.2 124 91.9
Potri.014G165300 Populus trichocarpa HOM05D004304 ORTHO05D005229 1.7e-64 249.2 126 89.7
CsaV3_6G009500 Cucumis sativus L. HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 90.5
Gohir.D07G092500 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 90.5
Gorai.001G099100 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 90.5
Hma1.2p1_0133F.1_g061310 Hydrangea macrophylla HOM05D004304 ORTHO05D005229 2.2e-64 248.8 126 89.7
MSTRG.14924 Avicennia marina HOM05D004304 ORTHO05D005229 2.9e-64 248.4 127 87.4
TWI75G1244 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 2.9e-64 248.4 126 91.3
Actinidia07885 Actinidia chinensis HOM05D004304 ORTHO05D005229 3.8e-64 248.1 126 88.1
Sc20g0003970 Simmondsia chinensis HOM05D004304 ORTHO05D005229 6.4e-64 247.3 124 90.3
THA.LOC104826653 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 6.4e-64 247.3 126 91.3
TWI18G0278 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 6.4e-64 247.3 126 90.5
vmacro09397 Vaccinium macrocarpon HOM05D004304 ORTHO05D005229 6.4e-64 247.3 126 87.3
MELO3C025975.2 Cucumis melo HOM05D004304 ORTHO05D005229 8.4e-64 246.9 126 89.7
DCAR_019709 Daucus carota HOM05D004304 ORTHO05D005229 8.4e-64 246.9 124 90.3
MSTRG.6645 Avicennia marina HOM05D004304 ORTHO05D005229 1.4e-63 246.1 124 89.5
CiPaw.03G279300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.4e-63 246.1 126 89.7
Eucgr.A01049 Eucalyptus grandis HOM05D004304 ORTHO05D005229 1.9e-63 245.7 126 88.1
FvH4_5g30980 Fragaria vesca HOM05D004304 ORTHO05D005229 3.2e-63 245.0 125 88.8
FAN13G0518 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.2e-63 245.0 125 88.8
FAN18G2534 Fragaria x ananassa HOM05D004304 ORTHO05D005229 3.2e-63 245.0 125 88.8
Aqoxy1G04225 Aquilegia oxysepala HOM05D004304 ORTHO05D005229 4.2e-63 244.6 126 87.3
Actinidia09779 Actinidia chinensis HOM05D004304 ORTHO05D005229 7.1e-63 243.8 126 88.1
FAN08G1359 Fragaria x ananassa HOM05D004304 ORTHO05D005229 9.3e-63 243.4 125 88.0
TAR624G1210 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.2e-62 243.0 126 88.1
Nn1g07447 Nelumbo nucifera HOM05D004304 ORTHO05D005229 1.6e-62 242.7 126 87.3
TAR627G0777 Trochodendron aralioides HOM05D004304 ORTHO05D005229 1.6e-62 242.7 126 88.1
Oeu012343.5 Olea europaea HOM05D005707 ORTHO05D007276 2.1e-62 242.3 128 86.7
RcHm_v2.0_Chr7g0226381 Rosa chinensis HOM05D004304 ORTHO05D005229 2.1e-62 242.3 126 88.1
PGR142G2829 Punica granatum HOM05D004304 ORTHO05D005229 2.7e-62 241.9 126 87.3
Glyma.02G305100 Glycine max HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.1
Medtr5g097240 Medicago truncatula HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.1
Os12g0514600 Oryza sativa ssp. japonica HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 86.5
Phvul.008G284800 Phaseolus vulgaris HOM05D004304 ORTHO05D005229 3.5e-62 241.5 126 88.1
TPR.G1269 Trifolium pratense HOM05D004304 ORTHO05D005229 6.0e-62 240.7 126 87.3
Migut.M00031 Erythranthe guttata HOM05D004304 ORTHO05D005229 1.8e-61 239.2 128 88.3
Glyma.14G008300 Glycine max HOM05D004304 ORTHO05D005229 1.8e-61 239.2 126 87.3
CARHR082470 Cardamine hirsuta HOM05D004304 ORTHO05D005229 2.3e-61 238.8 124 88.7
Thhalv10021767m.g Eutrema salsugineum HOM05D004304 ORTHO05D005229 2.3e-61 238.8 124 88.7
Gohir.D07G171200 Gossypium hirsutum HOM05D004304 ORTHO05D005229 2.3e-61 238.8 124 86.3
Gorai.001G191600 Gossypium raimondii HOM05D004304 ORTHO05D005229 2.3e-61 238.8 124 86.3
Sp3g06690 Schrenkiella parvula HOM05D004304 ORTHO05D005229 2.3e-61 238.8 124 88.7
PSO210G6619 Papaver somniferum HOM05D004304 ORTHO05D005229 3.0e-61 238.4 126 85.7
PSO302G0206 Papaver somniferum HOM05D004304 ORTHO05D005229 3.0e-61 238.4 126 85.7
Gohir.A07G170000 Gossypium hirsutum HOM05D004304 ORTHO05D005229 3.9e-61 238.0 124 86.3
LjContig00081g0006376 Lotus japonicus HOM05D004304 ORTHO05D005229 5.1e-61 237.7 126 85.7
BcaB03g14683 Brassica carinata HOM05D004304 ORTHO05D005229 8.7e-61 236.9 123 88.6
Lalb_Chr10g0107601 Lupinus albus HOM05D004304 ORTHO05D005229 8.7e-61 236.9 126 86.5
arahy.Tifrunner.gnm1.ann1.40Z2MJ Arachis hypogaea HOM05D004304 ORTHO05D005229 1.1e-60 236.5 126 85.7
arahy.Tifrunner.gnm1.ann1.F2KZWM Arachis hypogaea HOM05D004304 ORTHO05D005229 1.1e-60 236.5 126 85.7
AL3G19120 Arabidopsis lyrata HOM05D004304 ORTHO05D005229 1.5e-60 236.1 124 87.1
AT3G07760 Arabidopsis thaliana HOM05D004304 ORTHO05D005229 1.5e-60 236.1 124 87.1
CiPaw.04G196300 Carya illinoinensis HOM05D004304 ORTHO05D005229 1.9e-60 235.7 124 87.1
Carub.0003s0734 Capsella rubella HOM05D004304 ORTHO05D005229 2.5e-60 235.3 124 87.1
BcaC05g29569 Brassica carinata HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.1
A05p40460 Brassica napus HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.1
C05p59560 Brassica napus HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.1
BolC5t34611H Brassica oleracea HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.1
BraA05t22779Z Brassica rapa HOM05D004304 ORTHO05D005229 3.3e-60 235.0 124 87.1
Aa31LG5G18330 Aethionema arabicum HOM05D004304 ORTHO05D005229 4.3e-60 234.6 151 75.5
Zm00001eb137890 Zea mays HOM05D004304 ORTHO05D005229 4.3e-60 234.6 126 83.3
ATR1149G091 Amborella trichopoda HOM05D004304 ORTHO05D005229 5.6e-60 234.2 126 83.3
SGA_v2.0_scaffold181G39677 Striga asiatica HOM05D004304 ORTHO05D005229 5.6e-60 234.2 124 87.9
Lalb_Chr04g0247321 Lupinus albus HOM05D004304 ORTHO05D005229 7.4e-60 233.8 126 84.9
Lalb_Chr04g0247511 Lupinus albus HOM05D004304 ORTHO05D005229 7.4e-60 233.8 126 84.9
BcaC09g47944 Brassica carinata HOM05D004304 ORTHO05D005229 2.8e-59 231.9 121 88.4
BcaB04g21271 Brassica carinata HOM05D004304 ORTHO05D005229 4.8e-59 231.1 119 89.9
BolC1t05535H Brassica oleracea HOM05D004304 ORTHO05D005229 4.8e-59 231.1 119 89.9
HPP92_009568 Vanilla planifolia HOM05D004304 ORTHO05D005229 4.8e-59 231.1 125 82.4
Zm00001eb264410 Zea mays HOM05D004304 ORTHO05D005229 4.8e-59 231.1 126 81.0
BraA01t04365Z Brassica rapa HOM05D004304 ORTHO05D005229 6.2e-59 230.7 119 89.1
BraA03t12719Z Brassica rapa HOM05D004304 ORTHO05D005229 6.2e-59 230.7 124 85.5
A03p35420 Brassica napus HOM05D004304 ORTHO05D005229 8.1e-59 230.3 124 85.5
Zm00001eb166190 Zea mays HOM05D004304 ORTHO05D005229 8.1e-59 230.3 124 83.1
TWI36G1037 Tripterygium wilfordii HOM05D004304 ORTHO05D005229 1.8e-58 229.2 157 71.3
ECA240G0131 Erigeron canadensis HOM05D001343 ORTHO05D002008 2.4e-58 228.8 112 91.1
Rhsim04G0038800 Rhododendron simsii HOM05D004304 ORTHO05D005229 1.5e-57 226.1 171 64.9
SGA_v2.0_scaffold73G24513 Striga asiatica HOM05D004304 ORTHO05D005229 4.5e-57 224.6 130 81.5
HanXRQChr10g0306431 Helianthus annuus HOM05D004304 ORTHO05D005229 5.8e-57 224.2 124 82.3
SEGI_33416 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 4.9e-56 221.1 120 84.2
unitig_37.g12596 Utricularia gibba HOM05D004304 ORTHO05D005229 6.5e-56 220.7 133 80.5
Peaxi162Scf00047g02135 Petunia axillaris HOM05D004304 ORTHO05D005229 1.1e-55 219.9 112 91.1
CDE07G1815 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 1.4e-55 219.5 126 77.8
MSTRG.12237 Avicennia marina HOM05D004304 ORTHO05D005229 2.5e-55 218.8 124 83.9
CDE04G0517 Ceratophyllum demersum HOM05D004304 ORTHO05D005229 5.5e-55 217.6 126 76.2
SMO147G0193 Selaginella moellendorffii HOM05D004304 ORTHO05D005229 2.3e-53 212.2 120 79.2
TAR624G0596 Trochodendron aralioides HOM05D004304 ORTHO05D005229 6.7e-53 210.7 109 88.1
Eucgr.K00654 Eucalyptus grandis HOM05D004304 ORTHO05D005229 8.7e-53 210.3 114 84.2
MBI16_g26392_MAGBIO Magnolia biondii HOM05D004304 ORTHO05D005229 8.7e-53 210.3 114 85.1
SEGI_10863 Sequoiadendron giganteum HOM05D004304 ORTHO05D005229 2.5e-52 208.8 126 72.2
THA.LOC109116190 Tarenaya hassleriana HOM05D004304 ORTHO05D005229 1.4e-50 203.0 108 87.0
FAN04G0826 Fragaria x ananassa HOM05D004304 ORTHO05D005229 8.4e-48 193.7 149 65.1
Dinv05830 Davidia involucrata HOM05D004304 ORTHO05D005229 3.7e-43 178.3 94 85.1
Lsat_1_v5_gn_9_104560 Lactuca sativa HOM05D004304 ORTHO05D005229 3.7e-43 178.3 124 70.2
CSS0024587 Camellia sinensis var. sinensis HOM05D004304 ORTHO05D005229 8.2e-43 177.2 100 84.0
Dinv21270 Davidia involucrata HOM05D004304 ORTHO05D005229 3.1e-42 175.3 87 90.8
Manes.13G062800 Manihot esculenta HOM05D004304 ORTHO05D005229 1.5e-41 172.9 82 95.1
QL08p028475 Quercus lobata HOM05D004304 ORTHO05D005229 1.3e-40 169.9 82 95.1
Sed0023039 Sechium edule HOM05D004304 ORTHO05D005229 1.3e-40 169.9 85 90.6
Haze_12682 Corylus avellana HOM05D004304 ORTHO05D005229 8.5e-40 167.2 82 93.9
BcaC01g04291 Brassica carinata HOM05D000074 ORTHO05D001293 1.1e-39 166.8 118 68.6
VMungo0647G2439 Vigna mungo HOM05D004304 ORTHO05D005229 5.5e-39 164.5 82 91.5
SalBow7G0104 Salvia bowleyana HOM05D004304 ORTHO05D005229 7.2e-39 164.1 83 91.6
DCAR_012907 Daucus carota HOM05D004304 ORTHO05D005229 3.6e-38 161.8 77 94.8
FAN04G0834 Fragaria x ananassa HOM05D004304 ORTHO05D005229 1.0e-37 160.2 177 49.7
AUR62015060 Chenopodium quinoa HOM05D004304 ORTHO05D005229 1.8e-37 159.5 126 61.9
Psat2g004600 Pisum sativum HOM05D004304 ORTHO05D005229 2.3e-37 159.1 82 86.6
Sabra14G0125900 Salix brachista HOM05D004304 ORTHO05D005229 1.5e-36 156.4 110 70.0
Oeu040468.1 Olea europaea HOM05D004304 ORTHO05D005229 5.7e-36 154.5 78 89.7
Oeu063643.1 Olea europaea HOM05D004304 ORTHO05D005229 9.1e-34 147.1 78 85.9
BcaB04g17145 Brassica carinata HOM05D004304 ORTHO05D000003 2.6e-33 145.6 78 85.9
DCAR_021105 Daucus carota HOM05D004304 ORTHO05D005229 7.7e-33 144.1 118 61.9
unitig_46.g18340 Utricularia gibba HOM05D004304 ORTHO05D005229 6.5e-32 141.0 125 58.4
Cpa.g.c46948 Carica papaya HOM05D004304 ORTHO05D005229 9.4e-31 137.1 64 98.4
BcaB01g01337 Brassica carinata HOM05D004304 ORTHO05D005229 7.9e-30 134.0 73 82.2
SHI10146 Sapria himalayana HOM05D004304 ORTHO05D005229 2.3e-29 132.5 102 64.7
C03p43050 Brassica napus HOM05D004304 ORTHO05D005229 1.5e-25 119.8 107 56.1
BolC3t16573H Brassica oleracea HOM05D004304 ORTHO05D005229 1.5e-25 119.8 107 56.1
Hund21536 Selenicereus undatus HOM05D004304 ORTHO05D005229 1.5e-25 119.8 58 91.4
Ah.01g002230 Amaranthus hybridus HOM05D004304 ORTHO05D005229 9.4e-23 110.5 58 87.9
BcaB03g16127 Brassica carinata HOM05D004304 ORTHO05D005229 3.0e-21 105.5 57 87.7
Nn1g03242 Nelumbo nucifera HOM05D004304 ORTHO05D005229 9.4e-15 84.0 44 86.4


User provided reference genes

Program Settings