Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028768 Solanum tuberosum HOM05D004980 ORTHO05D006505 2.5e-164 582.0 287 100.0
Sopen07g033050 Solanum pennellii HOM05D004980 ORTHO05D006505 4.8e-160 567.8 283 97.9
Solyc07g064850.3 Solanum lycopersicum HOM05D004980 ORTHO05D006505 1.4e-159 566.2 283 97.5
PGSC0003DMG400022209 Solanum tuberosum HOM05D004980 ORTHO05D006505 1.3e-157 559.7 283 97.2
Peaxi162Scf00235g00521 Petunia axillaris HOM05D004980 ORTHO05D006505 3.6e-147 525.0 286 90.2
CAN.G337.68 Capsicum annuum HOM05D004980 ORTHO05D006505 2.3e-146 522.3 286 90.2
Oeu057850.1 Olea europaea HOM05D004980 ORTHO05D006505 2.1e-131 472.6 286 80.1
ECA246G3869 Erigeron canadensis HOM05D004980 ORTHO05D006505 3.6e-131 471.9 286 79.0
Lju1319A3G37 Lonicera japonica HOM05D004980 ORTHO05D006505 1.4e-130 469.9 290 79.3
Cc08_g05680 Coffea canephora HOM05D004980 ORTHO05D006505 3.0e-130 468.8 285 77.9
Ciclev10008197m.g Citrus clementina HOM05D004980 ORTHO05D006505 5.2e-130 468.0 287 79.1
Rhsim06G0222400 Rhododendron simsii HOM05D004980 ORTHO05D006505 1.5e-129 466.5 287 79.1
CiPaw.12G132600 Carya illinoinensis HOM05D004980 ORTHO05D006505 4.4e-129 464.9 286 77.3
TAR626G1444 Trochodendron aralioides HOM05D004980 ORTHO05D006505 4.4e-129 464.9 285 77.9
Manes.03G132700 Manihot esculenta HOM05D004980 ORTHO05D006505 7.5e-129 464.2 286 76.6
Cfa020293 Carpinus fangiana HOM05D004980 ORTHO05D006505 1.3e-128 463.4 286 77.3
Glyma.02G293600 Glycine max HOM05D004980 ORTHO05D006505 2.2e-128 462.6 286 76.2
Dinv40789 Davidia involucrata HOM05D004980 ORTHO05D006505 2.9e-128 462.2 286 76.6
QL08p007075 Quercus lobata HOM05D004980 ORTHO05D006505 6.4e-128 461.1 282 77.0
Atru.chr2.3504 Acer truncatum HOM05D004980 ORTHO05D006505 8.3e-128 460.7 283 77.0
Phvul.008G270700 Phaseolus vulgaris HOM05D004980 ORTHO05D006505 1.4e-127 459.9 287 75.6
FvH4_3g23360 Fragaria vesca HOM05D004980 ORTHO05D006505 2.4e-127 459.1 287 76.7
FAN11G2764 Fragaria x ananassa HOM05D004980 ORTHO05D006505 2.4e-127 459.1 287 76.7
GSVIVG01037705001 Vitis vinifera HOM05D004980 ORTHO05D006505 2.4e-127 459.1 285 76.5
Haze_09726 Corylus avellana HOM05D004980 ORTHO05D006505 5.4e-127 458.0 286 77.3
Lalb_Chr17g0348661 Lupinus albus HOM05D004980 ORTHO05D006505 5.4e-127 458.0 290 76.6
vmacro22325 Vaccinium macrocarpon HOM05D004980 ORTHO05D006505 5.4e-127 458.0 297 76.1
FAN21G0499 Fragaria x ananassa HOM05D004980 ORTHO05D006505 7.0e-127 457.6 287 76.7
Thecc.07G030400 Theobroma cacao HOM05D004980 ORTHO05D006505 7.0e-127 457.6 285 75.8
MSTRG.17982 Avicennia marina HOM05D004980 ORTHO05D006505 9.2e-127 457.2 289 76.1
Glyma.14G019100 Glycine max HOM05D004980 ORTHO05D006505 9.2e-127 457.2 286 75.5
arahy.Tifrunner.gnm1.ann1.C5REQA Arachis hypogaea HOM05D004980 ORTHO05D006505 3.5e-126 455.3 285 76.5
FAN16G1125 Fragaria x ananassa HOM05D004980 ORTHO05D006505 3.5e-126 455.3 287 76.3
LjContig00272g0012473 Lotus japonicus HOM05D004980 ORTHO05D006505 3.5e-126 455.3 283 76.3
CSS0002819 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 7.8e-126 454.1 283 75.3
RcHm_v2.0_Chr5g0041141 Rosa chinensis HOM05D004980 ORTHO05D006505 7.8e-126 454.1 286 75.2
Migut.N00646 Erythranthe guttata HOM05D004980 ORTHO05D006505 1.0e-125 453.8 286 77.3
HanXRQChr05g0159781 Helianthus annuus HOM05D004980 ORTHO05D006505 1.0e-125 453.8 286 75.9
Potri.001G355800 Populus trichocarpa HOM05D004980 ORTHO05D006505 1.7e-125 453.0 286 76.2
CANSAT11G1616 Cannabis sativa HOM05D004980 ORTHO05D006505 2.3e-125 452.6 284 76.8
Lsat_1_v5_gn_5_3221 Lactuca sativa HOM05D004980 ORTHO05D006505 3.9e-125 451.8 283 76.3
FAN25G0097 Fragaria x ananassa HOM05D004980 ORTHO05D006505 8.6e-125 450.7 287 75.6
EL10Ac4g07745 Beta vulgaris HOM05D004980 ORTHO05D006505 1.1e-124 450.3 283 75.6
Cpa.g.sc12.256 Carica papaya HOM05D004980 ORTHO05D006505 1.1e-124 450.3 286 72.4
SGA_v2.0_scaffold77G25279 Striga asiatica HOM05D004980 ORTHO05D006505 1.5e-124 449.9 314 71.7
COL.COLO4_09708 Corchorus olitorius HOM05D004980 ORTHO05D006505 1.9e-124 449.5 284 74.3
MD03G1195100 Malus domestica HOM05D004980 ORTHO05D006505 1.9e-124 449.5 289 74.4
Nn3g21061 Nelumbo nucifera HOM05D004980 ORTHO05D006505 2.5e-124 449.1 287 76.0
PSO541G1224 Papaver somniferum HOM05D004980 ORTHO05D006505 2.5e-124 449.1 289 74.0
arahy.Tifrunner.gnm1.ann1.45FXM1 Arachis hypogaea HOM05D004980 ORTHO05D006505 3.3e-124 448.7 285 75.4
Ca_06343_v3 Cicer arietinum L. HOM05D004980 ORTHO05D006505 3.3e-124 448.7 287 74.6
Prupe.4G221100 Prunus persica HOM05D004980 ORTHO05D006505 5.6e-124 448.0 286 74.8
SGA_v2.0_scaffold95G28711 Striga asiatica HOM05D004980 ORTHO05D006505 5.6e-124 448.0 291 75.3
TAR624G0219 Trochodendron aralioides HOM05D004980 ORTHO05D006505 5.6e-124 448.0 285 74.7
TPR.G4803 Trifolium pratense HOM05D004980 ORTHO05D006505 7.3e-124 447.6 286 74.8
Medtr5g093580 Medicago truncatula HOM05D004980 ORTHO05D006505 9.5e-124 447.2 287 73.5
Duzib268G1663 Durio zibethinus HOM05D004980 ORTHO05D006505 1.2e-123 446.8 284 74.3
DCAR_016653 Daucus carota HOM05D004980 ORTHO05D006505 1.6e-123 446.4 297 72.7
Sabra16G0233900 Salix brachista HOM05D004980 ORTHO05D006505 2.8e-123 445.7 286 74.8
MD11G1211400 Malus domestica HOM05D004980 ORTHO05D006505 3.6e-123 445.3 289 73.7
TPR.G1188 Trifolium pratense HOM05D004980 ORTHO05D006505 3.6e-123 445.3 286 73.1
TWI38G2207 Tripterygium wilfordii HOM05D004980 ORTHO05D006505 3.6e-123 445.3 286 75.5
PSO675G8833 Papaver somniferum HOM05D004980 ORTHO05D006505 6.2e-123 444.5 289 72.7
Gohir.A01G052750 Gossypium hirsutum HOM05D004980 ORTHO05D006505 4.0e-122 441.8 283 73.5
Ah.06g182490 Amaranthus hybridus HOM05D004980 ORTHO05D006505 8.9e-122 440.7 283 73.1
Eucgr.F00711 Eucalyptus grandis HOM05D004980 ORTHO05D006505 1.5e-121 439.9 284 76.4
ClCG10G005220 Citrullus lanatus HOM05D004980 ORTHO05D006505 2.6e-121 439.1 287 71.8
Psat2g012600 Pisum sativum HOM05D004980 ORTHO05D006505 3.4e-121 438.7 283 72.4
Gohir.D05G373600 Gossypium hirsutum HOM05D004980 ORTHO05D006505 5.8e-121 438.0 283 73.5
Sc16g0005820 Simmondsia chinensis HOM05D004980 ORTHO05D006505 7.5e-121 437.6 283 73.9
AUR62015838 Chenopodium quinoa HOM05D004980 ORTHO05D006505 1.3e-120 436.8 283 72.4
PGR083G1712 Punica granatum HOM05D004980 ORTHO05D006505 1.7e-120 436.4 286 72.7
Gorai.009G442300 Gossypium raimondii HOM05D004980 ORTHO05D006505 3.7e-120 435.3 283 73.1
Sed0018379 Sechium edule HOM05D004980 ORTHO05D006505 1.1e-119 433.7 287 72.5
CsaV3_3G004900 Cucumis sativus L. HOM05D004980 ORTHO05D006505 1.4e-119 433.3 284 72.2
unitig_61.g26342 Utricularia gibba HOM05D004980 ORTHO05D006505 4.1e-119 431.8 286 73.1
Aqoxy1G02957 Aquilegia oxysepala HOM05D004980 ORTHO05D006505 2.7e-118 429.1 318 66.0
THA.LOC104817676 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 4.6e-118 428.3 286 71.0
Sed0026676 Sechium edule HOM05D004980 ORTHO05D006505 1.0e-117 427.2 287 71.4
Hund23210 Selenicereus undatus HOM05D004980 ORTHO05D006505 1.3e-117 426.8 282 71.3
MBI03_g18682_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D006505 3.0e-117 425.6 278 73.7
AUR62020381 Chenopodium quinoa HOM05D004980 ORTHO05D006505 1.1e-116 423.7 291 69.4
MELO3C014186.2 Cucumis melo HOM05D004980 ORTHO05D006505 2.5e-116 422.5 290 68.6
AT5G55130 Arabidopsis thaliana HOM05D004980 ORTHO05D006505 6.2e-115 417.9 287 71.1
Gohir.1Z049437 Gossypium hirsutum HOM05D004980 ORTHO05D006505 1.1e-114 417.2 270 73.0
AL8G30640 Arabidopsis lyrata HOM05D004980 ORTHO05D006505 1.7e-112 409.8 287 70.4
SalBow3G0070 Salvia bowleyana HOM05D004980 ORTHO05D006505 2.9e-112 409.1 287 70.4
THA.LOC104813432 Tarenaya hassleriana HOM05D004980 ORTHO05D006505 8.3e-112 407.5 287 69.0
A10p12400 Brassica napus HOM05D004980 ORTHO05D006505 4.1e-111 405.2 287 68.3
BolC9t57438H Brassica oleracea HOM05D004980 ORTHO05D006505 5.4e-111 404.8 287 69.3
BcaB08g35877 Brassica carinata HOM05D004980 ORTHO05D006505 7.1e-111 404.4 287 67.9
Aa31LG3G11110 Aethionema arabicum HOM05D004980 ORTHO05D006505 9.2e-111 404.1 281 71.5
BolC2t07741H Brassica oleracea HOM05D004980 ORTHO05D006505 1.2e-110 403.7 287 68.6
BraA02t06050Z Brassica rapa HOM05D004980 ORTHO05D006505 1.6e-110 403.3 287 69.3
BraA10t43335Z Brassica rapa HOM05D004980 ORTHO05D006505 1.6e-110 403.3 287 68.3
Sp6g17070 Schrenkiella parvula HOM05D004980 ORTHO05D006505 2.1e-110 402.9 287 68.6
C02p16390 Brassica napus HOM05D004980 ORTHO05D006505 4.6e-110 401.7 287 69.0
Thhalv10013463m.g Eutrema salsugineum HOM05D004980 ORTHO05D006505 4.6e-110 401.7 287 68.6
ATR1128G016 Amborella trichopoda HOM05D004980 ORTHO05D006505 7.8e-110 401.0 286 69.6
BcaC04g20267 Brassica carinata HOM05D004980 ORTHO05D006505 7.8e-110 401.0 287 68.6
C09p45860 Brassica napus HOM05D004980 ORTHO05D006505 7.8e-110 401.0 287 68.6
SHI26580 Sapria himalayana HOM05D004980 ORTHO05D006505 7.8e-110 401.0 289 69.9
CARHR268470 Cardamine hirsuta HOM05D004980 ORTHO05D006505 1.0e-109 400.6 287 69.0
Carub.0008s1543 Capsella rubella HOM05D004980 ORTHO05D006505 2.3e-109 399.4 287 67.9
BcaC03g14262 Brassica carinata HOM05D004980 ORTHO05D006505 6.6e-109 397.9 287 68.3
A02p09860 Brassica napus HOM05D004980 ORTHO05D006505 6.2e-107 391.3 308 64.0
HPP92_015323 Vanilla planifolia HOM05D004980 ORTHO05D006505 6.8e-106 387.9 284 68.0
HPP92_015364 Vanilla planifolia HOM05D004980 ORTHO05D006505 6.8e-106 387.9 284 68.0
Actinidia32274 Actinidia chinensis HOM05D004980 ORTHO05D006505 1.2e-102 377.1 235 77.0
Zm00001eb188720 Zea mays HOM05D004980 ORTHO05D006505 7.8e-102 374.4 287 63.8
Zm00001eb375420 Zea mays HOM05D004980 ORTHO05D006505 7.8e-102 374.4 287 63.8
SEGI_15101 Sequoiadendron giganteum HOM05D004980 ORTHO05D006505 4.6e-94 348.6 302 57.6
Os02g0804600 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 2.0e-89 333.2 289 54.3
CSS0031886 Camellia sinensis var. sinensis HOM05D004980 ORTHO05D006505 3.4e-89 332.4 288 58.3
AagrBONN_evm.TU.Sc2ySwM_368.2510 Anthoceros agrestis HOM05D004980 ORTHO05D006505 8.4e-88 327.8 292 56.2
Mapoly0013s0163 Marchantia polymorpha HOM05D004980 ORTHO05D006505 5.4e-87 325.1 310 55.8
Actinidia05071 Actinidia chinensis HOM05D004980 ORTHO05D006505 9.3e-87 324.3 268 63.4
Pp3c19_6530 Physcomitrium patens HOM05D004980 ORTHO05D006505 1.8e-85 320.1 284 56.7
Lj1A365T17 Lonicera japonica HOM05D004980 ORTHO05D006505 1.1e-82 310.8 215 73.0
SMO347G0194 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 3.1e-82 309.3 283 54.4
SMO235G0013 Selaginella moellendorffii HOM05D004980 ORTHO05D006505 5.3e-82 308.5 283 54.8
Actinidia14067 Actinidia chinensis HOM05D004980 ORTHO05D006505 1.7e-80 303.5 278 56.5
Hma1.2p1_1332F.1_g276080 Hydrangea macrophylla HOM05D004980 ORTHO05D006505 7.1e-79 298.1 290 55.9
Zm00001eb074840 Zea mays HOM05D004980 ORTHO05D006505 3.3e-76 289.3 288 51.4
Actinidia02889 Actinidia chinensis HOM05D004980 ORTHO05D006505 1.7e-72 276.9 160 81.2
CDE02G3733 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 2.1e-70 270.0 165 77.6
Glyma.14G020732 Glycine max HOM05D004980 ORTHO05D006505 8.7e-69 264.6 183 69.9
CBR_g19046 Chara braunii HOM05D004980 ORTHO05D006505 1.1e-68 264.2 307 45.3
CAN.G1099.1 Capsicum annuum HOM05D004980 ORTHO05D006505 1.5e-65 253.8 183 73.2
VMungo0647G0060 Vigna mungo HOM05D004980 ORTHO05D006505 3.8e-64 249.2 170 69.4
Nitab4.5_0002826g0110 Nicotiana tabacum HOM05D004980 ORTHO05D006505 6.7e-61 238.4 119 95.8
Nitab4.5_0000328g0140 Nicotiana tabacum HOM05D004980 ORTHO05D006505 4.3e-60 235.7 119 94.1
Haze_26760 Corylus avellana HOM05D004980 ORTHO05D006505 5.5e-55 218.8 240 47.1
VMungo0647G1280 Vigna mungo HOM05D004980 ORTHO05D006505 6.7e-53 211.8 117 82.1
MCO02G238 Micromonas commoda HOM05D004980 ORTHO05D006505 2.8e-51 206.5 284 43.3
CAN.G631.2 Capsicum annuum HOM05D004980 ORTHO05D043407 4.4e-44 182.6 130 70.8
Cfa026714 Carpinus fangiana HOM05D004980 ORTHO05D006505 6.3e-43 178.7 309 35.6
PRCOL_00001455 Prasinoderma coloniale HOM05D004980 ORTHO05D006505 7.0e-42 175.3 294 37.1
CDE06G0656 Ceratophyllum demersum HOM05D004980 ORTHO05D006505 8.5e-40 168.3 163 52.8
Lj1A365T16 Lonicera japonica HOM05D004980 ORTHO05D006505 1.0e-37 161.4 80 88.8
Cre09.g402034 Chlamydomonas reinhardtii HOM05D004980 ORTHO05D006505 6.8e-37 158.7 253 37.9
Psat6g174400 Pisum sativum HOM05D004980 ORTHO05D322940 5.4e-26 122.5 88 68.2
Haze_27588 Corylus avellana HOM05D004980 ORTHO05D163887 1.7e-19 100.9 133 43.6
CAN.G699.10 Capsicum annuum HOM05D004980 ORTHO05D043407 2.4e-18 97.1 68 72.1
Os02g0525400 Oryza sativa ssp. japonica HOM05D004980 ORTHO05D006505 5.8e-12 75.9 40 80.0
Carub.0006s1771 Capsella rubella HOM05D006179 ORTHO05D008370 3.0e-08 63.5 159 28.3
SEGI_30719 Sequoiadendron giganteum HOM05D004980 ORTHO05D384019 1.5e-07 61.2 98 35.7
AL6G30860 Arabidopsis lyrata HOM05D006179 ORTHO05D008370 4.3e-07 59.7 159 28.3
AT5G19370 Arabidopsis thaliana HOM05D006179 ORTHO05D008370 5.6e-07 59.3 98 33.7
BcaB01g04864 Brassica carinata HOM05D006179 ORTHO05D008370 2.1e-06 57.4 159 27.7
BcaC03g13669 Brassica carinata HOM05D006179 ORTHO05D008370 2.1e-06 57.4 98 33.7
Aa31LG1G8830 Aethionema arabicum HOM05D006179 ORTHO05D008370 2.8e-06 57.0 98 33.7
BcaB01g05143 Brassica carinata HOM05D006179 ORTHO05D008370 2.8e-06 57.0 159 27.7
A03p09460 Brassica napus HOM05D006179 ORTHO05D008370 2.8e-06 57.0 159 27.7
C03p11040 Brassica napus HOM05D006179 ORTHO05D008370 2.8e-06 57.0 159 27.7
BolC3t13573H Brassica oleracea HOM05D006179 ORTHO05D008370 2.8e-06 57.0 159 27.7
BraA03t10264Z Brassica rapa HOM05D006179 ORTHO05D008370 2.8e-06 57.0 159 27.7
CAN.G1376.1 Capsicum annuum HOM05D004980 ORTHO05D021411 3.6e-06 56.6 46 56.5
Thhalv10014227m.g Eutrema salsugineum HOM05D006179 ORTHO05D008370 8.0e-06 55.5 98 31.6
MBI14_g13658_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D030039 8.0e-06 55.5 29 82.8
MBI15_g15732_MAGBIO Magnolia biondii HOM05D004980 ORTHO05D243769 8.0e-06 55.5 29 82.8
MBI18_g30544_MAGBIO Magnolia biondii HOM05D002404 ORTHO05D028395 8.0e-06 55.5 29 82.8


User provided reference genes

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