Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028757 Solanum tuberosum HOM05D004945 ORTHO05D005536 2.1e-31 138.3 65 100.0
Nitab4.5_0000617g0120 Nicotiana tabacum HOM05D004945 ORTHO05D005536 1.1e-24 115.9 57 89.5
Gohir.A13G208400 Gossypium hirsutum HOM05D004945 ORTHO05D005536 2.1e-18 95.1 62 67.7
COL.COLO4_22793 Corchorus olitorius HOM05D004945 ORTHO05D005536 4.6e-18 94.0 63 66.7
Gohir.D13G212900 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.6e-18 94.0 62 66.1
Gohir.A13G208500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.0e-18 93.6 62 66.1
Gohir.D13G212800 Gossypium hirsutum HOM05D004945 ORTHO05D005536 6.0e-18 93.6 62 66.1
Gorai.013G243200 Gossypium raimondii HOM05D004945 ORTHO05D005536 6.0e-18 93.6 62 66.1
TAR625G1304 Trochodendron aralioides HOM05D004945 ORTHO05D005536 7.9e-18 93.2 62 66.1
TAR636G3350 Trochodendron aralioides HOM05D004945 ORTHO05D005536 1.0e-17 92.8 62 66.1
Actinidia38805 Actinidia chinensis HOM05D004945 ORTHO05D005536 1.8e-17 92.0 67 65.7
Cpa.g.sc95.12 Carica papaya HOM05D004945 ORTHO05D005536 1.8e-17 92.0 62 64.5
COL.COLO4_08559 Corchorus olitorius HOM05D004945 ORTHO05D005536 2.3e-17 91.7 63 65.1
PGR142G1282 Punica granatum HOM05D004945 ORTHO05D005536 3.0e-17 91.3 67 62.7
MELO3C017430.2 Cucumis melo HOM05D004945 ORTHO05D005536 5.1e-17 90.5 59 66.1
Thecc.09G185900 Theobroma cacao HOM05D004945 ORTHO05D005536 8.7e-17 89.7 62 62.9
Dinv25512 Davidia involucrata HOM05D004945 ORTHO05D005536 1.1e-16 89.4 62 62.9
ATR0626G412 Amborella trichopoda HOM05D004945 ORTHO05D005536 1.5e-16 89.0 61 65.6
CSS0028266 Camellia sinensis var. sinensis HOM05D004945 ORTHO05D005536 1.5e-16 89.0 57 68.4
Gohir.A08G017500 Gossypium hirsutum HOM05D004945 ORTHO05D005536 1.5e-16 89.0 62 62.9
Manes.06G020000 Manihot esculenta HOM05D004945 ORTHO05D005536 1.5e-16 89.0 59 62.7
Duzib150G0603 Durio zibethinus HOM05D004945 ORTHO05D005536 3.3e-16 87.8 62 61.3
Aqoxy1G01195 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 4.3e-16 87.4 57 66.7
ClCG06G013580 Citrullus lanatus HOM05D004945 ORTHO05D005536 4.3e-16 87.4 57 66.7
Gohir.D08G028100 Gossypium hirsutum HOM05D004945 ORTHO05D005536 4.3e-16 87.4 62 61.3
Gorai.004G025200 Gossypium raimondii HOM05D004945 ORTHO05D005536 4.3e-16 87.4 62 61.3
Lsat_1_v5_gn_1_39460 Lactuca sativa HOM05D004945 ORTHO05D005536 4.3e-16 87.4 55 67.3
BcaNung00508 Brassica carinata HOM05D004945 ORTHO05D005536 5.7e-16 87.0 58 63.8
A03p59370 Brassica napus HOM05D004945 ORTHO05D005536 5.7e-16 87.0 58 63.8
C07p57400 Brassica napus HOM05D004945 ORTHO05D005536 5.7e-16 87.0 58 63.8
BolC7t46209H Brassica oleracea HOM05D004945 ORTHO05D005536 5.7e-16 87.0 58 63.8
BraA03t14994Z Brassica rapa HOM05D004945 ORTHO05D005536 5.7e-16 87.0 58 63.8
CiPaw.09G075900 Carya illinoinensis HOM05D004945 ORTHO05D005536 5.7e-16 87.0 54 66.7
Duzib150G1578 Durio zibethinus HOM05D004945 ORTHO05D005536 5.7e-16 87.0 62 61.3
FvH4_4g07310 Fragaria vesca HOM05D004945 ORTHO05D005536 5.7e-16 87.0 62 62.9
MD07G1027600 Malus domestica HOM05D004945 ORTHO05D005536 5.7e-16 87.0 54 68.5
MD13G1241900 Malus domestica HOM05D004945 ORTHO05D005536 5.7e-16 87.0 54 68.5
Potri.006G075600 Populus trichocarpa HOM05D004945 ORTHO05D005536 5.7e-16 87.0 62 56.5
Rhsim08G0249700 Rhododendron simsii HOM05D004945 ORTHO05D005536 5.7e-16 87.0 60 66.7
Ciclev10010043m.g Citrus clementina HOM05D004945 ORTHO05D005536 7.4e-16 86.7 60 60.0
Prupe.1G075600 Prunus persica HOM05D004945 ORTHO05D005536 7.4e-16 86.7 54 64.8
RcHm_v2.0_Chr4g0399651 Rosa chinensis HOM05D004945 ORTHO05D005536 9.6e-16 86.3 62 62.9
Sc12g0011140 Simmondsia chinensis HOM05D004945 ORTHO05D005536 9.6e-16 86.3 60 68.3
BcaC01g01207 Brassica carinata HOM05D004945 ORTHO05D005536 1.3e-15 85.9 57 64.9
A08p19460 Brassica napus HOM05D004945 ORTHO05D005536 1.3e-15 85.9 57 64.9
C03p88960 Brassica napus HOM05D004945 ORTHO05D005536 1.3e-15 85.9 57 64.9
BolC3t21206H Brassica oleracea HOM05D004945 ORTHO05D005536 1.3e-15 85.9 57 64.9
BraA08t33908Z Brassica rapa HOM05D004945 ORTHO05D005536 1.3e-15 85.9 57 64.9
CANSAT11G0762 Cannabis sativa HOM05D004945 ORTHO05D005536 1.3e-15 85.9 54 66.7
CsaV3_1G031860 Cucumis sativus L. HOM05D004945 ORTHO05D005536 1.3e-15 85.9 57 66.7
Hma1.2p1_0517F.1_g170730 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 1.3e-15 85.9 57 68.4
QL11p013920 Quercus lobata HOM05D004945 ORTHO05D005536 1.3e-15 85.9 52 67.3
QL11p014429 Quercus lobata HOM05D004945 ORTHO05D005536 1.3e-15 85.9 52 67.3
TWI34G0510 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.3e-15 85.9 63 60.3
TWI63G0641 Tripterygium wilfordii HOM05D004945 ORTHO05D005536 1.3e-15 85.9 68 61.8
BcaB03g12628 Brassica carinata HOM05D004945 ORTHO05D005536 1.6e-15 85.5 57 64.9
CARHR237930 Cardamine hirsuta HOM05D004945 ORTHO05D005536 1.6e-15 85.5 57 64.9
FAN07G0945 Fragaria x ananassa HOM05D004945 ORTHO05D005536 1.6e-15 85.5 62 62.9
PGSC0003DMG400026503 Solanum tuberosum HOM05D004945 ORTHO05D005536 1.6e-15 85.5 53 73.6
CiPaw.10G063900 Carya illinoinensis HOM05D004945 ORTHO05D005536 2.1e-15 85.1 60 60.0
AUR62018340 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.1e-15 85.1 57 70.2
AUR62031980 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.1e-15 85.1 57 70.2
AUR62044702 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.1e-15 85.1 57 70.2
AUR62044703 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.1e-15 85.1 57 70.2
Migut.D00890 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.1e-15 85.1 58 58.6
Carub.0007s1064 Capsella rubella HOM05D004945 ORTHO05D005536 2.8e-15 84.7 57 63.2
AUR62023991 Chenopodium quinoa HOM05D004945 ORTHO05D005536 2.8e-15 84.7 57 70.2
Cc04_g00230 Coffea canephora HOM05D004945 ORTHO05D005536 2.8e-15 84.7 58 62.1
Eucgr.C00118 Eucalyptus grandis HOM05D004945 ORTHO05D005536 2.8e-15 84.7 59 61.0
Sp7g27810 Schrenkiella parvula HOM05D004945 ORTHO05D005536 2.8e-15 84.7 57 63.2
Atru.chr7.757 Acer truncatum HOM05D004945 ORTHO05D005536 3.7e-15 84.3 58 62.1
Atru.chr7.779 Acer truncatum HOM05D004945 ORTHO05D005536 3.7e-15 84.3 58 62.1
DCAR_007670 Daucus carota HOM05D004945 ORTHO05D005536 3.7e-15 84.3 59 64.4
Potri.018G142500 Populus trichocarpa HOM05D004945 ORTHO05D005536 3.7e-15 84.3 62 56.5
CAN.G308.14 Capsicum annuum HOM05D004945 ORTHO05D005536 4.8e-15 84.0 49 75.5
Ca_02105_v3 Cicer arietinum L. HOM05D004945 ORTHO05D005536 4.8e-15 84.0 60 63.3
Hma1.2p1_1111F.1_g258380 Hydrangea macrophylla HOM05D004945 ORTHO05D005536 4.8e-15 84.0 54 70.4
Nitab4.5_0003757g0090 Nicotiana tabacum HOM05D004945 ORTHO05D005536 4.8e-15 84.0 49 75.5
Sc15g0001010 Simmondsia chinensis HOM05D004945 ORTHO05D005536 4.8e-15 84.0 60 66.7
AUR62030327 Chenopodium quinoa HOM05D004945 ORTHO05D005536 6.3e-15 83.6 57 68.4
Sed0005101 Sechium edule HOM05D004945 ORTHO05D005536 6.3e-15 83.6 57 63.2
Sed0015624 Sechium edule HOM05D004945 ORTHO05D005536 6.3e-15 83.6 57 63.2
Ah.13g075140 Amaranthus hybridus HOM05D004945 ORTHO05D005536 1.1e-14 82.8 60 65.0
Sabra18G0116400 Salix brachista HOM05D004945 ORTHO05D005536 1.1e-14 82.8 59 55.9
AL7G22230 Arabidopsis lyrata HOM05D004945 ORTHO05D005536 2.4e-14 81.6 57 63.2
AT4G30010 Arabidopsis thaliana HOM05D004945 ORTHO05D005536 2.4e-14 81.6 57 63.2
EL10Ac3g07227 Beta vulgaris HOM05D004945 ORTHO05D005536 2.4e-14 81.6 56 67.9
Medtr2g037990 Medicago truncatula HOM05D004945 ORTHO05D005536 2.4e-14 81.6 60 61.7
Ah.04g153390 Amaranthus hybridus HOM05D004945 ORTHO05D005536 3.1e-14 81.3 60 63.3
Thhalv10026677m.g Eutrema salsugineum HOM05D004945 ORTHO05D005536 3.1e-14 81.3 57 63.2
Aqoxy7G02794 Aquilegia oxysepala HOM05D004945 ORTHO05D005536 4.1e-14 80.9 58 63.8
Haze_06091 Corylus avellana HOM05D004945 ORTHO05D005536 4.1e-14 80.9 55 60.0
THA.LOC109116878 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.1e-14 80.9 62 56.5
Aa31LG2G20550 Aethionema arabicum HOM05D004945 ORTHO05D005536 5.3e-14 80.5 54 61.1
CDE04G2745 Ceratophyllum demersum HOM05D004945 ORTHO05D005536 5.3e-14 80.5 53 66.0
QL11p014451 Quercus lobata HOM05D004945 ORTHO05D005536 5.3e-14 80.5 62 59.7
THA.LOC104803956 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.3e-14 80.5 57 61.4
THA.LOC104803979 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.3e-14 80.5 57 61.4
THA.LOC104820006 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 5.3e-14 80.5 57 61.4
ECA247G2100 Erigeron canadensis HOM05D004945 ORTHO05D005536 1.2e-13 79.3 55 65.5
Phvul.007G156600 Phaseolus vulgaris HOM05D004945 ORTHO05D005536 1.2e-13 79.3 58 58.6
QL11p013931 Quercus lobata HOM05D004945 ORTHO05D005536 1.2e-13 79.3 52 67.3
SHI03058 Sapria himalayana HOM05D004945 ORTHO05D005536 1.2e-13 79.3 59 57.6
Solyc06g063310.2 Solanum lycopersicum HOM05D004945 ORTHO05D005536 1.2e-13 79.3 53 66.0
Sopen06g022780 Solanum pennellii HOM05D004945 ORTHO05D005536 1.2e-13 79.3 53 66.0
PSO063G0987 Papaver somniferum HOM05D004945 ORTHO05D005536 1.5e-13 79.0 54 64.8
Migut.I01191 Erythranthe guttata HOM05D004945 ORTHO05D005536 2.6e-13 78.2 51 62.7
Lalb_Chr11g0074741 Lupinus albus HOM05D004945 ORTHO05D005536 3.4e-13 77.8 61 55.7
PSO170G0997 Papaver somniferum HOM05D004945 ORTHO05D005536 3.4e-13 77.8 54 63.0
TPR.G7575 Trifolium pratense HOM05D004945 ORTHO05D005536 3.4e-13 77.8 60 58.3
THA.LOC104814658 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.5e-13 77.4 57 59.6
Psat1g144120 Pisum sativum HOM05D004945 ORTHO05D005536 1.0e-12 76.3 60 58.3
Glyma.15G165900 Glycine max HOM05D004945 ORTHO05D005536 1.7e-12 75.5 60 55.0
Psat1g144160 Pisum sativum HOM05D004945 ORTHO05D005536 1.7e-12 75.5 63 58.7
unitig_748.g8030 Utricularia gibba HOM05D004945 ORTHO05D005536 1.7e-12 75.5 50 68.0
Glyma.09G059600 Glycine max HOM05D004945 ORTHO05D005536 2.9e-12 74.7 60 56.7
arahy.Tifrunner.gnm1.ann1.M8DR4H Arachis hypogaea HOM05D004945 ORTHO05D005536 3.8e-12 74.3 53 64.2
arahy.Tifrunner.gnm1.ann1.ZYC9F0 Arachis hypogaea HOM05D004945 ORTHO05D005536 3.8e-12 74.3 53 64.2
unitig_32.g11008 Utricularia gibba HOM05D004945 ORTHO05D005536 1.1e-11 72.8 50 66.0
arahy.Tifrunner.gnm1.ann1.U71V3Q Arachis hypogaea HOM05D004945 ORTHO05D005536 1.4e-11 72.4 55 58.2
Lj6g0012502 Lotus japonicus HOM05D004945 ORTHO05D005536 1.4e-11 72.4 61 55.7
arahy.Tifrunner.gnm1.ann1.2FH55K Arachis hypogaea HOM05D004945 ORTHO05D005536 1.9e-11 72.0 54 59.3
THA.LOC104811777 Tarenaya hassleriana HOM05D004945 ORTHO05D005536 4.2e-11 70.9 56 58.9
MD10G1108200 Malus domestica HOM05D004945 ORTHO05D005536 2.3e-09 65.1 53 56.6
A01p08110 Brassica napus HOM05D004945 ORTHO05D005536 1.5e-08 62.4 53 50.9
BcaB03g15243 Brassica carinata HOM05D004945 ORTHO05D005536 5.7e-08 60.5 45 55.6
Os02g0175800 Oryza sativa ssp. japonica HOM05D004945 ORTHO05D005536 8.2e-07 56.6 50 52.0
SMO361G0023 Selaginella moellendorffii HOM05D004945 ORTHO05D005536 1.8e-06 55.5 46 45.7


User provided reference genes

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