Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028668 Solanum tuberosum HOM05D006219 ORTHO05D007562 1.3e-257 892.5 452 100.0
Sopen11g002000 Solanum pennellii HOM05D006219 ORTHO05D007562 1.2e-245 852.8 452 95.1
Solyc11g006060.2 Solanum lycopersicum HOM05D006219 ORTHO05D007562 1.4e-241 839.3 441 95.7
CAN.G582.15 Capsicum annuum HOM05D006219 ORTHO05D007562 1.9e-211 739.2 454 81.7
Peaxi162Scf00120g00021 Petunia axillaris HOM05D006219 ORTHO05D007562 1.7e-196 689.5 458 76.2
Nitab4.5_0000856g0150 Nicotiana tabacum HOM05D006219 ORTHO05D007562 7.5e-192 674.1 452 76.3
Nitab4.5_0010345g0010 Nicotiana tabacum HOM05D006219 ORTHO05D007562 2.2e-191 672.5 452 76.8
Oeu029038.1 Olea europaea HOM05D006219 ORTHO05D007562 3.9e-140 502.3 447 61.7
SalBow3G3408 Salvia bowleyana HOM05D006219 ORTHO05D007562 1.1e-139 500.7 461 59.9
Lj2C39T18 Lonicera japonica HOM05D006219 ORTHO05D007562 4.3e-139 498.8 451 58.8
CSS0036761 Camellia sinensis var. sinensis HOM05D006219 ORTHO05D007562 9.7e-139 497.7 453 59.2
Dinv06988 Davidia involucrata HOM05D006219 ORTHO05D007562 6.3e-138 495.0 444 60.6
Cfa006329 Carpinus fangiana HOM05D006219 ORTHO05D007562 1.1e-134 484.2 459 59.3
Cpa.g.sc162.24 Carica papaya HOM05D006219 ORTHO05D007562 1.2e-133 480.7 461 57.3
FAN02G1274 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.2e-133 480.7 458 57.4
FAN05G4153 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.6e-133 480.3 458 57.0
Gohir.D13G107000 Gossypium hirsutum HOM05D006219 ORTHO05D007562 2.7e-133 479.6 452 56.6
Gorai.013G120100 Gossypium raimondii HOM05D006219 ORTHO05D007562 2.7e-133 479.6 452 56.4
Lsat_1_v5_gn_2_107721 Lactuca sativa HOM05D006219 ORTHO05D007562 3.6e-133 479.2 462 56.7
Prupe.6G348600 Prunus persica HOM05D006219 ORTHO05D007562 3.6e-133 479.2 471 55.2
FvH4_6g02280 Fragaria vesca HOM05D006219 ORTHO05D007562 1.4e-132 477.2 457 57.1
FAN05G2712 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.4e-132 477.2 458 56.6
CiPaw.07G078300 Carya illinoinensis HOM05D006219 ORTHO05D007562 8.8e-132 474.6 456 57.2
Atru.chr2.897 Acer truncatum HOM05D006219 ORTHO05D007562 1.5e-131 473.8 453 57.4
Gohir.A13G103800 Gossypium hirsutum HOM05D006219 ORTHO05D007562 1.5e-131 473.8 453 56.1
Duzib128G1627 Durio zibethinus HOM05D006219 ORTHO05D007562 1.3e-130 470.7 417 58.8
Haze_04459 Corylus avellana HOM05D006219 ORTHO05D007562 2.2e-130 469.9 459 58.4
Manes.09G149100 Manihot esculenta HOM05D006219 ORTHO05D007562 2.2e-130 469.9 462 56.7
MD12G1245900 Malus domestica HOM05D006219 ORTHO05D007562 3.7e-130 469.2 462 55.2
Thecc.05G275300 Theobroma cacao HOM05D006219 ORTHO05D007562 5.3e-129 465.3 456 56.6
QL03p031869 Quercus lobata HOM05D006219 ORTHO05D007562 6.9e-129 464.9 458 58.1
CANSAT54G2996 Cannabis sativa HOM05D006219 ORTHO05D007562 1.2e-128 464.2 458 55.7
Potri.013G044900 Populus trichocarpa HOM05D006219 ORTHO05D007562 1.5e-128 463.8 462 55.8
QL08p015782 Quercus lobata HOM05D006219 ORTHO05D007562 2.6e-128 463.0 458 57.9
TWI36G0216 Tripterygium wilfordii HOM05D006219 ORTHO05D007562 3.4e-128 462.6 413 59.1
TAR633G0272 Trochodendron aralioides HOM05D006219 ORTHO05D007562 5.9e-128 461.8 459 56.4
PGR004G0430 Punica granatum HOM05D006219 ORTHO05D007562 7.7e-128 461.5 445 55.5
FAN09G4845 Fragaria x ananassa HOM05D006219 ORTHO05D007562 5.0e-127 458.8 387 60.2
CsaV3_1G045560 Cucumis sativus L. HOM05D006219 ORTHO05D007562 1.1e-126 457.6 465 55.9
Phvul.L001763 Phaseolus vulgaris HOM05D006219 ORTHO05D007562 4.2e-126 455.7 451 57.6
Sabra13G0041300 Salix brachista HOM05D006219 ORTHO05D007562 1.6e-125 453.8 464 53.9
Sc06g0004060 Simmondsia chinensis HOM05D006219 ORTHO05D007562 1.6e-125 453.8 461 55.7
Lalb_Chr06g0168341 Lupinus albus HOM05D006219 ORTHO05D007562 5.1e-124 448.7 416 56.0
Aqoxy5G00261 Aquilegia oxysepala HOM05D006219 ORTHO05D007562 1.1e-123 447.6 457 54.3
Migut.F00810 Erythranthe guttata HOM05D006219 ORTHO05D007562 2.0e-123 446.8 459 54.7
MELO3C024664.2 Cucumis melo HOM05D006219 ORTHO05D007562 2.6e-123 446.4 468 54.3
HanXRQChr14g0458931 Helianthus annuus HOM05D006219 ORTHO05D007562 7.4e-123 444.9 476 53.4
DCAR_030973 Daucus carota HOM05D006219 ORTHO05D007562 9.7e-123 444.5 442 54.3
ClCG06G009410 Citrullus lanatus HOM05D006219 ORTHO05D007562 1.3e-122 444.1 423 57.4
Actinidia06785 Actinidia chinensis HOM05D006219 ORTHO05D007562 6.3e-122 441.8 456 56.6
Ca_10007_v3 Cicer arietinum L. HOM05D006219 ORTHO05D007562 3.1e-121 439.5 435 55.2
VMungo0720G3050 Vigna mungo HOM05D006219 ORTHO05D007562 4.1e-121 439.1 452 55.3
Rhsim05G0175300 Rhododendron simsii HOM05D006219 ORTHO05D007562 7.0e-121 438.3 456 55.3
Lj5g0004576 Lotus japonicus HOM05D006219 ORTHO05D007562 2.2e-119 433.3 443 54.0
Glyma.10G166900 Glycine max HOM05D006219 ORTHO05D007562 1.4e-118 430.6 449 55.2
A06p37950 Brassica napus HOM05D006219 ORTHO05D007562 2.5e-118 429.9 459 52.9
BcaNung02093 Brassica carinata HOM05D006219 ORTHO05D007562 9.4e-118 427.9 459 52.5
C07p40330 Brassica napus HOM05D006219 ORTHO05D007562 9.4e-118 427.9 459 52.7
BolC7t44567H Brassica oleracea HOM05D006219 ORTHO05D007562 9.4e-118 427.9 459 52.5
BraA06t26711Z Brassica rapa HOM05D006219 ORTHO05D007562 1.6e-117 427.2 459 52.5
DCAR_002178 Daucus carota HOM05D006219 ORTHO05D007562 2.7e-117 426.4 400 56.8
PSO832G3978 Papaver somniferum HOM05D006219 ORTHO05D007562 2.7e-117 426.4 445 50.3
PSO210G1007 Papaver somniferum HOM05D006219 ORTHO05D007562 4.7e-117 425.6 445 50.3
HanXRQChr07g0201901 Helianthus annuus HOM05D006219 ORTHO05D007562 1.0e-116 424.5 459 51.0
ECA238G2300 Erigeron canadensis HOM05D006219 ORTHO05D007562 2.3e-116 423.3 461 50.8
Thhalv10004236m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 3.9e-116 422.5 460 51.5
unitig_748.g8683 Utricularia gibba HOM05D006219 ORTHO05D007562 3.9e-116 422.5 388 57.2
Sp2g20170 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.1e-115 421.0 457 51.0
Sed0012882 Sechium edule HOM05D006219 ORTHO05D007562 3.3e-115 419.5 385 58.4
Medtr1g079870 Medicago truncatula HOM05D006219 ORTHO05D007562 4.1e-113 412.5 421 53.7
Aa31LG11G8710 Aethionema arabicum HOM05D006219 ORTHO05D007562 7.0e-113 411.8 455 50.5
BcaNung01728 Brassica carinata HOM05D006219 ORTHO05D007562 9.1e-113 411.4 456 50.4
THA.LOC104799246 Tarenaya hassleriana HOM05D006219 ORTHO05D007562 9.1e-113 411.4 460 50.9
AUR62037607 Chenopodium quinoa HOM05D006219 ORTHO05D007562 2.6e-112 409.8 407 54.8
AL6G40560 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 2.9e-111 406.4 438 51.4
CARHR185150 Cardamine hirsuta HOM05D006219 ORTHO05D007562 5.0e-111 405.6 456 51.3
Carub.0006s2578 Capsella rubella HOM05D006219 ORTHO05D007562 8.0e-109 398.3 418 52.4
FAN14G1966 Fragaria x ananassa HOM05D006219 ORTHO05D007562 8.0e-109 398.3 457 51.6
FAN14G5007 Fragaria x ananassa HOM05D006219 ORTHO05D007562 1.0e-108 397.9 457 51.6
AT5G28500 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 1.4e-108 397.5 417 52.8
Thhalv10020727m.g Eutrema salsugineum HOM05D006219 ORTHO05D007562 1.8e-108 397.1 452 50.2
BcaC09g47795 Brassica carinata HOM05D006219 ORTHO05D007562 2.6e-107 393.3 451 50.1
Aa31LG5G14970 Aethionema arabicum HOM05D006219 ORTHO05D007562 1.1e-105 387.9 455 49.2
BolC1t05743H Brassica oleracea HOM05D006219 ORTHO05D007562 1.8e-105 387.1 456 49.6
BcaB04g21366 Brassica carinata HOM05D006219 ORTHO05D007562 3.1e-105 386.3 449 50.1
AT3G04550 Arabidopsis thaliana HOM05D006219 ORTHO05D007562 4.1e-105 386.0 449 49.9
EL10Ac4g09057 Beta vulgaris HOM05D006219 ORTHO05D007562 9.1e-105 384.8 467 48.6
Sp3g03390 Schrenkiella parvula HOM05D006219 ORTHO05D007562 1.6e-104 384.0 452 48.5
Carub.0003s0370 Capsella rubella HOM05D006219 ORTHO05D007562 2.0e-104 383.6 451 49.0
Ah.06g191950 Amaranthus hybridus HOM05D006219 ORTHO05D007562 1.0e-103 381.3 463 49.5
BraA01t04521Z Brassica rapa HOM05D006219 ORTHO05D007562 1.0e-103 381.3 451 49.0
CARHR078740 Cardamine hirsuta HOM05D006219 ORTHO05D007562 3.8e-103 379.4 442 49.3
A01p40850 Brassica napus HOM05D006219 ORTHO05D007562 8.0e-101 371.7 452 48.5
BNapus_Darmor_BZH_scaffold_78p00860 Brassica napus HOM05D006219 ORTHO05D007562 8.0e-101 371.7 452 48.5
AL3G14570 Arabidopsis lyrata HOM05D006219 ORTHO05D007562 1.8e-100 370.5 447 48.3
SGA_v2.0_scaffold210G42065 Striga asiatica HOM05D006219 ORTHO05D007562 6.8e-100 368.6 372 57.5
CDE05G0955 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 1.3e-98 364.4 395 51.6
RcHm_v2.0_Chr3g0450031 Rosa chinensis HOM05D006219 ORTHO05D007562 1.3e-98 364.4 329 57.4
HPP92_025973 Vanilla planifolia HOM05D006219 ORTHO05D007562 5.4e-97 359.0 453 48.1
Psat6g143080 Pisum sativum HOM05D006219 ORTHO05D007562 2.7e-96 356.7 343 54.8
vmacro20002 Vaccinium macrocarpon HOM05D006219 ORTHO05D007562 7.7e-96 355.1 343 56.6
AUR62004874 Chenopodium quinoa HOM05D006219 ORTHO05D007562 1.3e-90 337.8 342 52.9
TPR.G10266 Trifolium pratense HOM05D006219 ORTHO05D007562 2.2e-90 337.0 423 46.6
CDE08G1514 Ceratophyllum demersum HOM05D006219 ORTHO05D007562 3.7e-90 336.3 375 49.1
Nn1g02711 Nelumbo nucifera HOM05D006219 ORTHO05D007562 1.5e-86 324.3 333 55.6
ATR0680G103 Amborella trichopoda HOM05D006219 ORTHO05D007562 1.8e-84 317.4 458 44.8
Os10g0445600 Oryza sativa ssp. japonica HOM05D006219 ORTHO05D007562 2.3e-79 300.4 442 44.3
MBI18_g37358_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 3.6e-77 293.1 363 48.5
Hma1.2p1_1227F.1_g268570 Hydrangea macrophylla HOM05D006219 ORTHO05D007562 1.9e-73 280.8 337 51.6
Zm00001eb066000 Zea mays HOM05D006219 ORTHO05D007562 9.2e-73 278.5 454 39.2
MBI18_g32212_MAGBIO Magnolia biondii HOM05D006219 ORTHO05D007562 4.3e-70 269.6 463 43.0
SEGI_10874 Sequoiadendron giganteum HOM05D006219 ORTHO05D007562 8.1e-69 265.4 404 39.6
Glyma.20G222200 Glycine max HOM05D006219 ORTHO05D007562 7.1e-65 252.3 255 53.3
MD04G1228600 Malus domestica HOM05D006219 ORTHO05D007562 4.7e-61 239.6 228 53.5
Ciclev10027647m.g Citrus clementina HOM05D006219 ORTHO05D007562 3.8e-58 229.9 220 57.3
Mapoly0001s0431 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.9e-57 227.6 408 37.5
Eucgr.H04253 Eucalyptus grandis HOM05D006219 ORTHO05D007562 1.1e-54 218.4 317 46.4
AagrBONN_evm.TU.Sc2ySwM_117.503 Anthoceros agrestis HOM05D006219 ORTHO05D007562 8.1e-53 212.2 418 35.4
Pp3c18_4320 Physcomitrium patens HOM05D006219 ORTHO05D007562 6.9e-52 209.1 390 36.7
Lalb_Chr18g0044051 Lupinus albus HOM05D006219 ORTHO05D007562 1.5e-51 208.0 237 47.7
CBR_g29314 Chara braunii HOM05D006219 ORTHO05D007562 7.8e-48 195.7 466 34.5
Cre06.g308450 Chlamydomonas reinhardtii HOM05D006219 ORTHO05D007562 4.2e-25 120.2 418 27.8
AagrBONN_evm.TU.Sc2ySwM_228.3126 Anthoceros agrestis HOM05D006219 ORTHO05D007562 1.3e-21 108.6 249 34.9
Cpa.g.sc162.21 Carica papaya HOM05D000369 ORTHO05D007562 7.7e-19 99.4 108 51.9
PRCOL_00003529 Prasinoderma coloniale HOM05D006219 ORTHO05D007562 1.3e-18 98.6 390 26.4
SMO137G0122 Selaginella moellendorffii HOM05D006219 ORTHO05D007562 4.2e-17 93.6 171 37.4
MCO04G553 Micromonas commoda HOM05D006219 ORTHO05D007562 7.2e-17 92.8 407 27.0
Mapoly4350s0001 Marchantia polymorpha HOM05D006219 ORTHO05D007562 1.0e-15 89.0 170 32.9
Pp3c16_6440 Physcomitrium patens HOM05D006219 ORTHO05D007562 8.2e-13 79.3 225 28.9
Glyma.15G246700 Glycine max HOM05D001461 ORTHO05D005534 7.2e-09 66.2 86 41.9


User provided reference genes

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