Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028508 Solanum tuberosum HOM05D001732 ORTHO05D003164 2.4e-78 295.4 148 100.0
Solyc06g068170.2 Solanum lycopersicum HOM05D001732 ORTHO05D003164 4.4e-64 248.1 211 66.8
Sopen06g025440 Solanum pennellii HOM05D001732 ORTHO05D003164 8.2e-63 243.8 211 65.9
Nitab4.5_0000373g0090 Nicotiana tabacum HOM05D001732 ORTHO05D003164 3.7e-47 191.8 206 55.3
Nitab4.5_0006769g0020 Nicotiana tabacum HOM05D001732 ORTHO05D003164 2.5e-43 179.1 206 54.4
Peaxi162Scf00207g00637 Petunia axillaris HOM05D001732 ORTHO05D003164 2.3e-36 156.0 207 48.3
Dinv30611 Davidia involucrata HOM05D001732 ORTHO05D003164 8.1e-18 94.4 120 50.8
CSS0043208 Camellia sinensis var. sinensis HOM05D001732 ORTHO05D003164 1.7e-15 86.7 85 56.5
Oeu005941.1 Olea europaea HOM05D001732 ORTHO05D003164 3.2e-14 82.4 202 31.2
Rhsim08G0212500 Rhododendron simsii HOM05D001732 ORTHO05D003164 1.3e-12 77.0 209 32.5
MSTRG.22750 Avicennia marina HOM05D001732 ORTHO05D003164 1.7e-12 76.6 118 42.4
TWI12G0819 Tripterygium wilfordii HOM05D001732 ORTHO05D003164 3.0e-12 75.9 189 31.7
vmacro19001 Vaccinium macrocarpon HOM05D001732 ORTHO05D003164 6.6e-12 74.7 121 43.8
TAR383G0496 Trochodendron aralioides HOM05D001732 ORTHO05D003164 8.6e-12 74.3 195 31.8
Oeu045128.1 Olea europaea HOM05D001732 ORTHO05D003164 1.1e-11 73.9 121 43.0
SalBow2G2879 Salvia bowleyana HOM05D001732 ORTHO05D003164 1.1e-11 73.9 82 54.9
Eucgr.F03880 Eucalyptus grandis HOM05D001732 ORTHO05D003164 1.9e-11 73.2 186 32.3
Solyc06g066010.3 Solanum lycopersicum HOM05D001732 ORTHO05D003164 9.5e-11 70.9 75 57.3
Sopen06g024490 Solanum pennellii HOM05D001732 ORTHO05D003164 9.5e-11 70.9 75 57.3
GSVIVG01017347001 Vitis vinifera HOM05D000001 ORTHO05D000003 1.2e-10 70.5 158 35.4
SGA_v2.0_scaffold5G02701 Striga asiatica HOM05D000085 ORTHO05D001615 1.6e-10 70.1 92 46.7
PGSC0003DMG400020464 Solanum tuberosum HOM05D001732 ORTHO05D003164 3.6e-10 68.9 75 54.7
CiPaw.03G247600 Carya illinoinensis HOM05D001732 ORTHO05D003164 6.2e-10 68.2 70 52.9
Duzib192G0144 Durio zibethinus HOM05D001732 ORTHO05D003164 1.8e-09 66.6 182 30.2
Gorai.009G127600 Gossypium raimondii HOM05D001732 ORTHO05D003164 2.4e-09 66.2 184 31.0
Nitab4.5_0000109g0380 Nicotiana tabacum HOM05D007100 ORTHO05D008958 4.0e-09 65.5 47 70.2
Gohir.A05G122700 Gossypium hirsutum HOM05D001732 ORTHO05D003164 5.2e-09 65.1 184 31.5
Nn8g39520 Nelumbo nucifera HOM05D001732 ORTHO05D003164 5.2e-09 65.1 53 56.6
Nitab4.5_0003634g0010 Nicotiana tabacum HOM05D001732 ORTHO05D003164 5.2e-09 65.1 57 61.4
MBI14_g02326_MAGBIO Magnolia biondii HOM05D001732 ORTHO05D003164 6.8e-09 64.7 91 45.1
CAN.G1230.4 Capsicum annuum HOM05D001732 ORTHO05D003164 8.9e-09 64.3 71 53.5
TAR626G1621 Trochodendron aralioides HOM05D001732 ORTHO05D003164 1.5e-08 63.5 101 42.6
Ciclev10027091m.g Citrus clementina HOM05D001732 ORTHO05D003164 2.0e-08 63.2 92 41.3
Peaxi162Scf00643g00113 Petunia axillaris HOM05D001732 ORTHO05D003164 2.0e-08 63.2 43 74.4
HPP92_027272 Vanilla planifolia HOM05D001732 ORTHO05D003164 2.6e-08 62.8 73 45.2
Lj7A724G57 Lonicera japonica HOM05D001732 ORTHO05D003164 3.4e-08 62.4 47 61.7
FAN26G0972 Fragaria x ananassa HOM05D001732 ORTHO05D003164 5.8e-08 61.6 60 50.0
HanXRQChr16g0510791 Helianthus annuus HOM05D001732 ORTHO05D003164 5.8e-08 61.6 73 50.7
Lsat_1_v5_gn_5_30260 Lactuca sativa HOM05D001732 ORTHO05D003164 5.8e-08 61.6 73 52.1
CiPaw.04G174500 Carya illinoinensis HOM05D001732 ORTHO05D003164 7.6e-08 61.2 53 56.6
ECA246G4408 Erigeron canadensis HOM05D001732 ORTHO05D003164 7.6e-08 61.2 75 54.7
Eucgr.C02766 Eucalyptus grandis HOM05D001732 ORTHO05D003164 7.6e-08 61.2 144 37.5
Eucgr.L01003 Eucalyptus grandis HOM05D001732 ORTHO05D003164 7.6e-08 61.2 144 36.8
Gohir.D07G032750 Gossypium hirsutum HOM05D001732 ORTHO05D003164 9.9e-08 60.8 45 64.4
Gorai.001G034300 Gossypium raimondii HOM05D001732 ORTHO05D003164 9.9e-08 60.8 45 64.4
Lj8C706G6 Lonicera japonica HOM05D001732 ORTHO05D003164 9.9e-08 60.8 66 51.5
DCAR_001530 Daucus carota HOM05D001732 ORTHO05D003164 1.3e-07 60.5 61 52.5
FvH4_1g02640 Fragaria vesca HOM05D001732 ORTHO05D003164 1.3e-07 60.5 60 50.0
Nn2g12099 Nelumbo nucifera HOM05D001732 ORTHO05D003164 1.3e-07 60.5 62 51.6
Nitab4.5_0004887g0010 Nicotiana tabacum HOM05D001732 ORTHO05D003164 1.3e-07 60.5 45 66.7
Psat0s3273g0080 Pisum sativum HOM05D001732 ORTHO05D003164 1.3e-07 60.5 67 49.3
PGR102G0382 Punica granatum HOM05D001732 ORTHO05D003164 1.3e-07 60.5 62 50.0
TWI34G1756 Tripterygium wilfordii HOM05D001732 ORTHO05D003164 1.3e-07 60.5 43 62.8
ATR0800G055 Amborella trichopoda HOM05D001732 ORTHO05D003164 1.7e-07 60.1 91 42.9
Haze_21509 Corylus avellana HOM05D001732 ORTHO05D003164 1.7e-07 60.1 59 54.2
Prupe.3G088400 Prunus persica HOM05D001732 ORTHO05D003164 1.7e-07 60.1 62 54.8
Sed0023402 Sechium edule HOM05D001732 ORTHO05D003164 1.7e-07 60.1 51 60.8
TWI34G0604 Tripterygium wilfordii HOM05D001732 ORTHO05D003164 1.7e-07 60.1 86 40.7
BcaNung03216 Brassica carinata HOM05D001732 ORTHO05D003164 2.2e-07 59.7 47 59.6
Gohir.A07G028675 Gossypium hirsutum HOM05D001732 ORTHO05D003164 2.2e-07 59.7 45 62.2
Medtr1g012600 Medicago truncatula HOM05D001732 ORTHO05D003164 2.2e-07 59.7 55 52.7
Oeu042704.1 Olea europaea HOM05D001732 ORTHO05D003164 2.2e-07 59.7 46 65.2
Atru.chr1.2927 Acer truncatum HOM05D001732 ORTHO05D003164 2.9e-07 59.3 93 41.9
Nitab4.5_0002042g0100 Nicotiana tabacum HOM05D001732 ORTHO05D003164 2.9e-07 59.3 45 66.7
Potri.006G255500 Populus trichocarpa HOM05D001732 ORTHO05D003164 2.9e-07 59.3 55 56.4
QL02p089729 Quercus lobata HOM05D001732 ORTHO05D003164 2.9e-07 59.3 56 50.0
Dinv08636 Davidia involucrata HOM05D002754 ORTHO05D003271 3.8e-07 58.9 83 43.4
FAN23G3115 Fragaria x ananassa HOM05D001732 ORTHO05D003164 3.8e-07 58.9 60 48.3
Lsat_1_v5_gn_4_88480 Lactuca sativa HOM05D001732 ORTHO05D003164 3.8e-07 58.9 75 48.0
Oeu057297.1 Olea europaea HOM05D001732 ORTHO05D003164 3.8e-07 58.9 47 61.7
QL02p021507 Quercus lobata HOM05D001732 ORTHO05D003164 3.8e-07 58.9 64 54.7
Sp7g30010 Schrenkiella parvula HOM05D001732 ORTHO05D003164 3.8e-07 58.9 47 59.6
CAN.G320.6 Capsicum annuum HOM05D001732 ORTHO05D003164 4.9e-07 58.5 45 66.7
Glyma.06G067500 Glycine max HOM05D001732 ORTHO05D003164 4.9e-07 58.5 64 50.0
BcaNung02272 Brassica carinata HOM05D001732 ORTHO05D003164 6.4e-07 58.2 47 57.4
A06p36080 Brassica napus HOM05D001732 ORTHO05D003164 6.4e-07 58.2 47 57.4
C01p06760 Brassica napus HOM05D001732 ORTHO05D003164 6.4e-07 58.2 47 57.4
C07p42500 Brassica napus HOM05D001732 ORTHO05D003164 6.4e-07 58.2 47 57.4
BolC7t44778H Brassica oleracea HOM05D001732 ORTHO05D003164 6.4e-07 58.2 47 57.4
BraA06t26529Z Brassica rapa HOM05D001732 ORTHO05D003164 6.4e-07 58.2 47 57.4
CARHR240150 Cardamine hirsuta HOM05D001732 ORTHO05D003164 6.4e-07 58.2 47 57.4
Prupe.7G247900 Prunus persica HOM05D001732 ORTHO05D003164 6.4e-07 58.2 59 50.8
RcHm_v2.0_Chr6g0297801 Rosa chinensis HOM05D001732 ORTHO05D003164 6.4e-07 58.2 57 54.4
Thecc.09G023600 Theobroma cacao HOM05D001732 ORTHO05D003164 6.4e-07 58.2 47 55.3
CANSAT25G2751 Cannabis sativa HOM05D001732 ORTHO05D003164 8.4e-07 57.8 59 54.2
ClCG06G011440 Citrullus lanatus HOM05D001732 ORTHO05D003164 8.4e-07 57.8 60 51.7
DCAR_006213 Daucus carota HOM05D001732 ORTHO05D003164 8.4e-07 57.8 71 47.9
FAN28G1192 Fragaria x ananassa HOM05D001732 ORTHO05D003164 8.4e-07 57.8 60 48.3
TPR.G15647 Trifolium pratense HOM05D001732 ORTHO05D003164 8.4e-07 57.8 53 58.5
TWI32G1257 Tripterygium wilfordii HOM05D001732 ORTHO05D003164 8.4e-07 57.8 82 40.2
AL7G19600 Arabidopsis lyrata HOM05D001732 ORTHO05D003164 1.1e-06 57.4 47 57.4
AT4G32270 Arabidopsis thaliana HOM05D001732 ORTHO05D003164 1.1e-06 57.4 47 57.4
BcaC09g52007 Brassica carinata HOM05D001732 ORTHO05D003164 1.1e-06 57.4 47 57.4
BcaNung03146 Brassica carinata HOM05D001732 ORTHO05D003164 1.1e-06 57.4 47 57.4
BolC1t00668H Brassica oleracea HOM05D001732 ORTHO05D003164 1.1e-06 57.4 47 57.4
Carub.0007s0833 Capsella rubella HOM05D001732 ORTHO05D003164 1.1e-06 57.4 47 57.4
Cc08_g00540 Coffea canephora HOM05D001732 ORTHO05D003164 1.1e-06 57.4 66 47.0
Peaxi162Scf00663g00319 Petunia axillaris HOM05D001732 ORTHO05D003164 1.1e-06 57.4 45 62.2
Prupe.1G481900 Prunus persica HOM05D001732 ORTHO05D003164 1.1e-06 57.4 57 54.4
AT5G25340 Arabidopsis thaliana HOM05D001732 ORTHO05D003164 1.4e-06 57.0 47 57.4
CARHR188060 Cardamine hirsuta HOM05D001732 ORTHO05D003164 1.4e-06 57.0 47 57.4
COL.COLO4_18867 Corchorus olitorius HOM05D001732 ORTHO05D003164 1.4e-06 57.0 57 47.4
CsaV3_1G026670 Cucumis sativus L. HOM05D001732 ORTHO05D003164 1.4e-06 57.0 60 51.7
Thhalv10026098m.g Eutrema salsugineum HOM05D001732 ORTHO05D003164 1.4e-06 57.0 47 55.3
Gohir.A08G252200 Gossypium hirsutum HOM05D001732 ORTHO05D003164 1.4e-06 57.0 56 51.8
Phvul.009G092432 Phaseolus vulgaris HOM05D001732 ORTHO05D003164 1.4e-06 57.0 65 46.2
Sp2g22200 Schrenkiella parvula HOM05D001732 ORTHO05D003164 1.4e-06 57.0 47 55.3
GSVIVG01035868001 Vitis vinifera HOM05D001732 ORTHO05D003164 1.4e-06 57.0 53 56.6
Actinidia13227 Actinidia chinensis HOM05D001732 ORTHO05D003164 1.9e-06 56.6 61 49.2
Aa31LG11G4510 Aethionema arabicum HOM05D001732 ORTHO05D003164 1.9e-06 56.6 47 57.4
AL6G37070 Arabidopsis lyrata HOM05D001732 ORTHO05D003164 1.9e-06 56.6 47 57.4
Thhalv10004912m.g Eutrema salsugineum HOM05D001732 ORTHO05D003164 1.9e-06 56.6 47 57.4
Hma1.2p1_0243F.1_g100870 Hydrangea macrophylla HOM05D001732 ORTHO05D003164 1.9e-06 56.6 69 47.8
Lj1g0016479 Lotus japonicus HOM05D001732 ORTHO05D003164 1.9e-06 56.6 56 51.8
PGR044G0721 Punica granatum HOM05D001732 ORTHO05D003164 1.9e-06 56.6 56 53.6
Sed0021082 Sechium edule HOM05D001732 ORTHO05D003164 1.9e-06 56.6 72 48.6
Sopen08g010490 Solanum pennellii HOM05D001732 ORTHO05D003164 1.9e-06 56.6 48 58.3
PGSC0003DMG400026656 Solanum tuberosum HOM05D001732 ORTHO05D003164 1.9e-06 56.6 45 64.4
BcaNung03578 Brassica carinata HOM05D001732 ORTHO05D003164 2.4e-06 56.2 47 55.3
A01p06130 Brassica napus HOM05D001732 ORTHO05D003164 2.4e-06 56.2 47 55.3
A08p18260 Brassica napus HOM05D001732 ORTHO05D003164 2.4e-06 56.2 47 53.2
C07p59120 Brassica napus HOM05D001732 ORTHO05D003164 2.4e-06 56.2 47 55.3
BraA01t00576Z Brassica rapa HOM05D001732 ORTHO05D003164 2.4e-06 56.2 47 55.3
COL.COLO4_11937 Corchorus olitorius HOM05D001732 ORTHO05D003164 2.4e-06 56.2 73 49.3
MELO3C029652.2 Cucumis melo HOM05D001732 ORTHO05D003164 2.4e-06 56.2 46 60.9
RcHm_v2.0_Chr2g0135131 Rosa chinensis HOM05D001732 ORTHO05D003164 2.4e-06 56.2 46 67.4
Hund25791 Selenicereus undatus HOM05D001732 ORTHO05D003164 2.4e-06 56.2 46 54.3
Solyc08g023630.3 Solanum lycopersicum HOM05D001732 ORTHO05D003164 2.4e-06 56.2 45 64.4
Carub.0006s2316 Capsella rubella HOM05D001732 ORTHO05D003164 3.2e-06 55.8 47 55.3
Gohir.D08G273800 Gossypium hirsutum HOM05D001732 ORTHO05D003164 3.2e-06 55.8 56 50.0
Gorai.004G292300 Gossypium raimondii HOM05D001732 ORTHO05D003164 3.2e-06 55.8 56 50.0
BcaB03g12736 Brassica carinata HOM05D001732 ORTHO05D003164 4.2e-06 55.5 47 55.3
EL10Ac2g04206 Beta vulgaris HOM05D001732 ORTHO05D003164 5.4e-06 55.1 57 50.9
A02p39780 Brassica napus HOM05D001732 ORTHO05D003164 5.4e-06 55.1 47 55.3
BolC3t21051H Brassica oleracea HOM05D001732 ORTHO05D003164 5.4e-06 55.1 47 51.1
BraA02t08944Z Brassica rapa HOM05D001732 ORTHO05D003164 5.4e-06 55.1 47 55.3
BraA08t33784Z Brassica rapa HOM05D001732 ORTHO05D003164 5.4e-06 55.1 47 51.1
CiPaw.08G010600 Carya illinoinensis HOM05D001732 ORTHO05D003164 5.4e-06 55.1 43 65.1
ECA232G4471 Erigeron canadensis HOM05D001732 ORTHO05D003164 5.4e-06 55.1 45 62.2
FAN14G0646 Fragaria x ananassa HOM05D001732 ORTHO05D003164 5.4e-06 55.1 49 63.3
Lj5g0003653 Lotus japonicus HOM05D001732 ORTHO05D003164 5.4e-06 55.1 51 54.9
MD02G1027100 Malus domestica HOM05D001732 ORTHO05D003164 5.4e-06 55.1 69 46.4
MD15G1168600 Malus domestica HOM05D001732 ORTHO05D003164 5.4e-06 55.1 49 53.1
QL05p031363 Quercus lobata HOM05D001732 ORTHO05D003164 5.4e-06 55.1 54 55.6
THA.LOC104799708 Tarenaya hassleriana HOM05D001732 ORTHO05D003164 5.4e-06 55.1 49 55.1
Thecc.06G025700 Theobroma cacao HOM05D001732 ORTHO05D003164 5.4e-06 55.1 134 34.3
Atru.chr7.2440 Acer truncatum HOM05D001732 ORTHO05D003164 7.1e-06 54.7 63 52.4
Ah.16g104500 Amaranthus hybridus HOM05D007100 ORTHO05D008958 7.1e-06 54.7 65 46.2
Cfa001955 Carpinus fangiana HOM05D001732 ORTHO05D003164 7.1e-06 54.7 82 46.3
CsaV3_3G046350 Cucumis sativus L. HOM05D001732 ORTHO05D003164 7.1e-06 54.7 53 60.4
PSO210G1219 Papaver somniferum HOM05D001732 ORTHO05D003164 7.1e-06 54.7 51 49.0
SGA_v2.0_scaffold64G21950 Striga asiatica HOM05D001732 ORTHO05D003164 7.1e-06 54.7 57 50.9
FAN20G3220 Fragaria x ananassa HOM05D002754 ORTHO05D003271 9.2e-06 54.3 57 52.6
FAN24G0193 Fragaria x ananassa HOM05D002754 ORTHO05D003271 9.2e-06 54.3 57 52.6
Glyma.17G211600 Glycine max HOM05D001732 ORTHO05D003164 9.2e-06 54.3 47 57.4


User provided reference genes

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