Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 4.3e-203 711.1 347 100.0
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 2.0e-200 702.2 347 98.6
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 7.5e-200 700.3 347 98.3
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 2.8e-194 681.8 347 95.1
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 4.3e-179 631.3 344 86.9
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 2.0e-176 622.5 344 84.3
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.4e-176 621.7 347 85.3
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.4e-176 621.7 347 85.3
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 5.8e-176 620.9 347 85.0
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 3.8e-175 618.2 347 83.9
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 4.2e-174 614.8 346 82.7
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 7.1e-174 614.0 341 83.6
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 3.5e-173 611.7 343 83.4
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 4.6e-173 611.3 347 83.9
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 2.3e-172 609.0 344 83.4
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 3.0e-172 608.6 344 83.4
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 3.9e-172 608.2 343 82.8
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 3.9e-172 608.2 344 83.4
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 5.1e-172 607.8 343 84.0
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 5.1e-172 607.8 347 81.3
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 6.6e-172 607.4 347 82.4
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 1.1e-171 606.7 343 83.4
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 1.1e-171 606.7 347 82.1
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 1.5e-171 606.3 344 81.7
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 2.5e-171 605.5 344 82.6
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 9.6e-171 603.6 343 81.9
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 1.6e-170 602.8 341 83.0
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 2.8e-170 602.1 343 81.6
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 4.8e-170 601.3 343 82.8
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 6.2e-170 600.9 344 80.5
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 8.1e-170 600.5 341 81.5
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.1e-169 600.1 344 82.0
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.4e-169 599.7 347 81.8
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 3.1e-169 598.6 344 82.3
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 3.1e-169 598.6 345 81.2
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 4.5e-168 594.7 344 80.2
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 4.5e-168 594.7 344 80.5
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 5.8e-168 594.3 344 80.8
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 5.8e-168 594.3 344 80.8
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 5.8e-168 594.3 344 80.5
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 7.6e-168 594.0 343 80.5
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 9.9e-168 593.6 344 81.4
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.3e-167 593.2 341 81.5
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.3e-167 593.2 341 80.9
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 1.7e-167 592.8 344 80.2
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 1.7e-167 592.8 343 80.5
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 2.2e-167 592.4 341 81.5
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.2e-167 592.4 341 81.8
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 2.2e-167 592.4 345 80.0
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 2.9e-167 592.0 341 81.5
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 2.9e-167 592.0 341 80.1
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 2.9e-167 592.0 343 80.8
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 2.9e-167 592.0 364 77.7
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 3.8e-167 591.7 343 80.2
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 3.8e-167 591.7 343 79.0
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 4.9e-167 591.3 344 81.1
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 4.9e-167 591.3 343 79.6
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 4.9e-167 591.3 347 79.8
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 6.4e-167 590.9 341 80.6
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.4e-166 589.7 341 80.9
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 1.9e-166 589.3 343 80.2
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 3.2e-166 588.6 344 79.7
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 3.2e-166 588.6 344 79.1
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 4.2e-166 588.2 358 77.9
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 4.2e-166 588.2 357 79.6
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 4.2e-166 588.2 344 82.0
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 5.4e-166 587.8 343 79.9
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 7.1e-166 587.4 343 79.6
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 7.1e-166 587.4 345 79.4
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 7.1e-166 587.4 343 80.5
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.6e-165 586.3 347 79.3
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 1.6e-165 586.3 341 81.2
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 2.1e-165 585.9 343 79.6
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.1e-165 585.9 341 80.4
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 2.7e-165 585.5 346 77.7
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 2.7e-165 585.5 345 79.7
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 3.5e-165 585.1 346 79.2
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 4.6e-165 584.7 341 80.1
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 7.9e-165 583.9 341 80.4
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 1.0e-164 583.6 343 78.7
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 1.0e-164 583.6 343 79.3
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.3e-164 583.2 344 79.7
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 2.3e-164 582.4 343 79.3
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 3.9e-164 581.6 337 80.7
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 8.7e-164 580.5 341 78.3
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 1.5e-163 579.7 343 78.4
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 2.5e-163 578.9 344 78.5
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 9.6e-163 577.0 352 77.8
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 9.6e-163 577.0 343 78.7
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 1.6e-162 576.2 343 78.1
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 2.4e-161 572.4 343 77.3
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.1e-161 572.0 391 70.6
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 4.0e-161 571.6 350 79.1
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 1.2e-160 570.1 432 66.4
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 3.4e-160 568.5 361 75.9
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 4.9e-159 564.7 344 78.2
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.9e-158 562.8 318 83.6
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 2.7e-157 558.9 343 76.1
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 2.3e-156 555.8 449 63.3
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.3e-151 540.0 341 73.6
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 4.6e-149 531.6 349 73.9
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 1.3e-148 530.0 354 71.8
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.2e-144 516.9 304 80.3
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 1.5e-144 516.5 347 73.8
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 4.2e-142 508.4 341 72.1
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 3.0e-140 502.3 341 70.4
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 3.3e-139 498.8 315 80.6
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 9.7e-139 497.3 315 80.6
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 3.7e-138 495.4 339 69.3
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.8e-137 493.0 339 69.0
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 2.6e-131 472.6 270 83.3
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 8.5e-127 457.6 326 66.0
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 1.1e-126 457.2 346 65.9
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 5.5e-126 454.9 255 83.1
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 3.3e-123 445.7 255 80.4
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 2.9e-119 432.6 339 60.8
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 3.4e-115 419.1 387 57.9
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 1.7e-111 406.8 232 79.7
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.2e-109 400.6 319 64.6
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 2.6e-107 392.9 228 81.1
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 1.7e-106 390.2 339 55.5
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 1.4e-105 387.1 349 59.9
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 1.0e-100 370.9 245 71.8
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.2e-93 347.4 339 51.6
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 1.4e-92 344.0 341 51.3
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 7.5e-91 338.2 254 66.9
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 3.7e-90 335.9 190 84.2
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 1.6e-88 330.5 189 83.6
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 2.4e-81 306.6 176 83.0
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 1.1e-73 281.2 219 64.8
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 9.9e-67 258.1 134 94.0
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 5.6e-62 242.3 167 71.3
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 6.2e-61 238.8 118 93.2
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 2.4e-52 210.3 344 38.4
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 9.0e-52 208.4 118 80.5
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 3.8e-42 176.4 94 86.2
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.2e-40 171.4 99 83.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 1.8e-39 167.5 248 43.1
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 6.2e-37 159.1 358 33.2
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 7.2e-25 119.0 81 74.1
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.5e-22 111.3 95 57.9
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 6.3e-21 105.9 270 32.2
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.2e-21 105.5 171 41.5
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 2.6e-19 100.5 85 61.2
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.8e-12 77.8 44 77.3
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 7.0e-12 75.9 45 77.8


User provided reference genes

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