Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028387 Solanum tuberosum HOM05D005950 ORTHO05D008673 2.2e-160 568.9 289 100.0
Solyc05g012700.3 Solanum lycopersicum HOM05D005950 ORTHO05D008673 2.9e-152 542.0 290 96.2
Sopen05g007530 Solanum pennellii HOM05D005950 ORTHO05D008673 6.4e-152 540.8 290 95.9
CAN.G624.24 Capsicum annuum HOM05D005950 ORTHO05D008673 3.6e-139 498.4 288 86.8
Nitab4.5_0006153g0020 Nicotiana tabacum HOM05D005950 ORTHO05D008673 2.5e-124 449.1 292 80.8
Nitab4.5_0000208g0380 Nicotiana tabacum HOM05D005950 ORTHO05D008673 6.9e-122 441.0 292 80.5
Peaxi162Scf00023g00931 Petunia axillaris HOM05D005950 ORTHO05D008673 7.1e-119 431.0 290 77.6
QL03p049137 Quercus lobata HOM05D005950 ORTHO05D008673 2.2e-104 382.9 249 74.3
Haze_12503 Corylus avellana HOM05D005950 ORTHO05D008673 4.9e-104 381.7 246 76.0
Cc11_g15000 Coffea canephora HOM05D005950 ORTHO05D008673 2.5e-103 379.4 252 73.0
Manes.08G101200 Manihot esculenta HOM05D005950 ORTHO05D008673 1.6e-102 376.7 286 66.4
Potri.001G100300 Populus trichocarpa HOM05D005950 ORTHO05D008673 1.8e-101 373.2 285 67.4
CSS0009236 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 3.9e-101 372.1 249 73.5
Dinv03756 Davidia involucrata HOM05D005950 ORTHO05D008673 5.1e-101 371.7 244 75.0
CSS0041196 Camellia sinensis var. sinensis HOM05D005950 ORTHO05D008673 1.1e-100 370.5 249 73.1
CiPaw.05G101200 Carya illinoinensis HOM05D005950 ORTHO05D008673 7.4e-100 367.9 246 72.8
MD13G1130900 Malus domestica HOM05D005950 ORTHO05D008673 1.3e-99 367.1 246 71.1
Thecc.02G192100 Theobroma cacao HOM05D005950 ORTHO05D008673 1.3e-99 367.1 297 63.3
Gorai.002G021400 Gossypium raimondii HOM05D005950 ORTHO05D008673 2.8e-99 365.9 273 66.3
RhsimUnG0153300 Rhododendron simsii HOM05D005950 ORTHO05D008673 4.8e-99 365.2 286 64.3
Rhsim12G0072500 Rhododendron simsii HOM05D005950 ORTHO05D008673 6.2e-99 364.8 286 64.3
Duzib248G1270 Durio zibethinus HOM05D005950 ORTHO05D008673 1.4e-98 363.6 246 71.1
Atru.chr12.1419 Acer truncatum HOM05D005950 ORTHO05D008673 1.8e-98 363.2 246 72.4
GSVIVG01001090001 Vitis vinifera HOM05D005950 ORTHO05D008673 1.8e-98 363.2 281 66.2
Ciclev10005525m.g Citrus clementina HOM05D005950 ORTHO05D008673 2.4e-98 362.8 253 69.6
COL.COLO4_36001 Corchorus olitorius HOM05D005950 ORTHO05D008673 2.4e-98 362.8 293 64.8
Gohir.A01G020600 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.4e-98 362.8 273 65.9
Prupe.1G214800 Prunus persica HOM05D005950 ORTHO05D008673 2.4e-98 362.8 246 71.1
Eucgr.B03560 Eucalyptus grandis HOM05D005950 ORTHO05D008673 4.0e-98 362.1 265 68.3
MBI10_g32324_MAGBIO Magnolia biondii HOM05D005950 ORTHO05D008673 1.5e-97 360.1 284 64.4
Phvul.007G000300 Phaseolus vulgaris HOM05D005950 ORTHO05D008673 2.6e-97 359.4 290 62.4
SalBow2G0445 Salvia bowleyana HOM05D005950 ORTHO05D008673 3.4e-97 359.0 252 70.6
TWI36G0089 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 4.5e-97 358.6 261 67.8
MELO3C022359.2 Cucumis melo HOM05D005950 ORTHO05D008673 5.8e-97 358.2 246 71.5
Lalb_Chr06g0164721 Lupinus albus HOM05D005950 ORTHO05D008673 7.6e-97 357.8 293 61.8
CsaV3_6G007730 Cucumis sativus L. HOM05D005950 ORTHO05D008673 3.8e-96 355.5 246 70.7
TAR629G3081 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.9e-96 355.1 245 70.2
Carub.0001s2657 Capsella rubella HOM05D005950 ORTHO05D008673 8.4e-96 354.4 244 72.1
PGR102G2360 Punica granatum HOM05D005950 ORTHO05D008673 1.1e-95 354.0 246 70.3
Cpa.g.sc182.2 Carica papaya HOM05D005950 ORTHO05D008673 2.5e-95 352.8 250 69.2
Hma1.2p1_0660F.1_g197630 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.5e-95 352.8 242 71.5
RcHm_v2.0_Chr4g0428871 Rosa chinensis HOM05D005950 ORTHO05D008673 2.5e-95 352.8 247 69.2
THA.LOC104820536 Tarenaya hassleriana HOM05D005950 ORTHO05D008673 3.2e-95 352.4 246 71.1
TAR371G0811 Trochodendron aralioides HOM05D005950 ORTHO05D008673 4.2e-95 352.1 246 70.3
VMungo0720G2460 Vigna mungo HOM05D005950 ORTHO05D008673 4.2e-95 352.1 288 62.2
Aa31sc45G70 Aethionema arabicum HOM05D005950 ORTHO05D008673 7.1e-95 351.3 246 71.1
AUR62005715 Chenopodium quinoa HOM05D005950 ORTHO05D008673 1.2e-94 350.5 224 74.6
FAN12G2095 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.2e-94 350.5 246 69.9
Sed0005763 Sechium edule HOM05D005950 ORTHO05D008673 1.2e-94 350.5 246 72.0
Oeu027106.1 Olea europaea HOM05D005950 ORTHO05D008673 1.6e-94 350.1 224 75.4
Hund27394 Selenicereus undatus HOM05D005950 ORTHO05D008673 1.6e-94 350.1 246 67.9
MSTRG.8054 Avicennia marina HOM05D005950 ORTHO05D008673 2.1e-94 349.7 244 71.7
Ah.03g135560 Amaranthus hybridus HOM05D005950 ORTHO05D008673 2.7e-94 349.4 244 68.4
FvH4_4g22640 Fragaria vesca HOM05D005950 ORTHO05D008673 3.5e-94 349.0 282 63.1
FAN17G1731 Fragaria x ananassa HOM05D005950 ORTHO05D008673 6.0e-94 348.2 278 64.4
Lsat_1_v5_gn_3_32320 Lactuca sativa HOM05D005950 ORTHO05D008673 6.0e-94 348.2 246 68.7
Sabra01G0075200 Salix brachista HOM05D005950 ORTHO05D008673 7.9e-94 347.8 341 56.9
FAN07G2488 Fragaria x ananassa HOM05D005950 ORTHO05D008673 1.8e-93 346.7 270 65.2
C05p26890 Brassica napus HOM05D005950 ORTHO05D008673 2.3e-93 346.3 234 72.6
Thhalv10008446m.g Eutrema salsugineum HOM05D005950 ORTHO05D008673 2.3e-93 346.3 226 75.7
BcaC05g26819 Brassica carinata HOM05D005950 ORTHO05D008673 3.0e-93 345.9 233 72.5
HanXRQChr06g0175111 Helianthus annuus HOM05D005950 ORTHO05D008673 3.0e-93 345.9 251 67.7
AL1G41670 Arabidopsis lyrata HOM05D005950 ORTHO05D008673 3.9e-93 345.5 225 75.6
AT1G28140 Arabidopsis thaliana HOM05D005950 ORTHO05D008673 3.9e-93 345.5 226 74.3
Actinidia33998 Actinidia chinensis HOM05D005950 ORTHO05D008673 5.1e-93 345.1 271 64.2
Aqoxy5G03108 Aquilegia oxysepala HOM05D005950 ORTHO05D008673 5.1e-93 345.1 285 61.1
BolC5t31407H Brassica oleracea HOM05D005950 ORTHO05D008673 5.1e-93 345.1 233 72.1
BcaB07g32425 Brassica carinata HOM05D005950 ORTHO05D008673 8.7e-93 344.4 225 74.2
Migut.K01055 Erythranthe guttata HOM05D005950 ORTHO05D008673 8.7e-93 344.4 280 62.1
EL10Ac6g13611 Beta vulgaris HOM05D005950 ORTHO05D008673 1.5e-92 343.6 246 68.7
A09p37910 Brassica napus HOM05D005950 ORTHO05D008673 4.3e-92 342.0 234 72.2
vmacro16072 Vaccinium macrocarpon HOM05D005950 ORTHO05D008673 4.3e-92 342.0 279 63.1
DCAR_024633 Daucus carota HOM05D000512 ORTHO05D008673 5.7e-92 341.7 235 70.2
Medtr1g099520 Medicago truncatula HOM05D005950 ORTHO05D008673 7.4e-92 341.3 246 69.5
TPR.G7754 Trifolium pratense HOM05D005950 ORTHO05D008673 7.4e-92 341.3 284 63.0
Sp1g24330 Schrenkiella parvula HOM05D005950 ORTHO05D008673 9.7e-92 340.9 234 70.5
BraA09t39303Z Brassica rapa HOM05D005950 ORTHO05D008673 1.3e-91 340.5 234 71.8
CARHR027610 Cardamine hirsuta HOM05D005950 ORTHO05D008673 6.3e-91 338.2 244 68.9
LjContig00470g0001843 Lotus japonicus HOM05D005950 ORTHO05D008673 8.2e-91 337.8 291 59.1
CANSAT01G2759 Cannabis sativa HOM05D005950 ORTHO05D008673 1.1e-90 337.4 246 66.7
Sc19g0003090 Simmondsia chinensis HOM05D005950 ORTHO05D008673 1.1e-90 337.4 246 66.3
PSO478G4484 Papaver somniferum HOM05D005950 ORTHO05D008673 5.3e-90 335.1 225 69.8
arahy.Tifrunner.gnm1.ann1.MTDN4F Arachis hypogaea HOM05D005950 ORTHO05D008673 9.0e-90 334.3 245 66.9
HPP92_007045 Vanilla planifolia HOM05D005950 ORTHO05D008673 1.2e-89 334.0 255 65.1
PSO017G6070 Papaver somniferum HOM05D005950 ORTHO05D008673 1.5e-89 333.6 225 68.4
SGA_v2.0_scaffold157G37356 Striga asiatica HOM05D005950 ORTHO05D008673 1.0e-88 330.9 245 66.9
CDE02G3863 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 4.2e-87 325.5 219 69.9
ATR0582G132 Amborella trichopoda HOM05D005950 ORTHO05D008673 9.4e-87 324.3 246 63.8
unitig_747.g21110 Utricularia gibba HOM05D005950 ORTHO05D008673 1.6e-86 323.6 234 69.2
Os03g0850600 Oryza sativa ssp. japonica HOM05D005950 ORTHO05D008673 3.3e-84 315.8 225 68.4
Zm00001eb064540 Zea mays HOM05D005950 ORTHO05D008673 1.7e-83 313.5 285 56.8
Glyma.20G249800 Glycine max HOM05D005950 ORTHO05D008673 4.5e-81 305.4 226 66.8
Psat6g195320 Pisum sativum HOM05D005950 ORTHO05D008673 3.8e-80 302.4 257 61.1
Ca_10708_v3 Cicer arietinum L. HOM05D005950 ORTHO05D008673 5.0e-80 302.0 216 68.1
Pp3c8_12800 Physcomitrium patens HOM05D005950 ORTHO05D008673 6.5e-80 301.6 238 61.3
ClCG06G001700 Citrullus lanatus HOM05D005950 ORTHO05D008673 1.2e-78 297.4 246 62.6
Duzib052G0358 Durio zibethinus HOM05D005950 ORTHO05D008673 2.7e-78 296.2 226 68.1
Lj3A1077T57 Lonicera japonica HOM05D005950 ORTHO05D008673 1.0e-77 294.3 203 72.9
AagrBONN_evm.TU.Sc2ySwM_344.2741 Anthoceros agrestis HOM05D005950 ORTHO05D008673 5.1e-77 292.0 243 60.1
SMO367G1143 Selaginella moellendorffii HOM05D005950 ORTHO05D008673 5.1e-77 292.0 234 60.7
Mapoly0027s0093 Marchantia polymorpha HOM05D005950 ORTHO05D008673 2.6e-76 289.7 221 63.3
SEGI_01129 Sequoiadendron giganteum HOM05D005950 ORTHO05D008673 1.7e-75 287.0 208 68.3
AUR62028840 Chenopodium quinoa HOM05D005950 ORTHO05D008673 5.0e-72 275.4 206 67.5
CBR_g3659 Chara braunii HOM05D005950 ORTHO05D008673 2.5e-71 273.1 234 57.3
arahy.Tifrunner.gnm1.ann1.PXY63F Arachis hypogaea HOM05D005950 ORTHO05D008673 1.8e-69 266.9 245 58.0
Hma1.2p1_0660F.1_g197620 Hydrangea macrophylla HOM05D005950 ORTHO05D008673 2.2e-67 260.0 187 69.5
Nn3g16271 Nelumbo nucifera HOM05D005950 ORTHO05D008673 1.2e-60 237.7 246 51.6
CDE06G2125 Ceratophyllum demersum HOM05D005950 ORTHO05D008673 1.6e-57 227.3 140 75.0
TWI18G1378 Tripterygium wilfordii HOM05D005950 ORTHO05D008673 1.7e-48 197.2 148 64.2
Cre04.g228450 Chlamydomonas reinhardtii HOM05D005950 ORTHO05D008673 8.6e-48 194.9 230 45.2
MCO02G210 Micromonas commoda HOM05D005950 ORTHO05D008673 8.9e-45 184.9 213 46.0
PRCOL_00003015 Prasinoderma coloniale HOM05D005950 ORTHO05D008673 1.2e-38 164.5 214 43.0
Peaxi162Scf00040g00101 Petunia axillaris HOM05D005950 ORTHO05D008673 1.5e-36 157.5 140 61.4
Gohir.D01G019100 Gossypium hirsutum HOM05D005950 ORTHO05D008673 2.3e-32 143.7 140 54.3
TPR.G36353 Trifolium pratense HOM05D005950 ORTHO05D008673 2.8e-30 136.7 85 74.1
Peaxi162Scf00003g00713 Petunia axillaris HOM05D005950 ORTHO05D305722 1.5e-20 104.4 136 47.1
Zm00001eb422050 Zea mays HOM05D005950 ORTHO05D008673 4.4e-20 102.8 82 59.8
FAN25G3256 Fragaria x ananassa HOM05D005950 ORTHO05D203075 2.4e-18 97.1 110 50.0
Zm00001eb141620 Zea mays HOM05D005950 ORTHO05D444810 9.2e-18 95.1 68 63.2
Hma1.2p1_0660F.1_g197640 Hydrangea macrophylla HOM05D005950 ORTHO05D020170 1.6e-17 94.4 56 75.0
MD16G1141000 Malus domestica HOM05D005950 ORTHO05D020170 2.1e-17 94.0 61 68.9
Peaxi162Scf00059g01815 Petunia axillaris HOM05D005950 ORTHO05D306406 1.7e-16 90.9 170 39.4
FAN20G0916 Fragaria x ananassa HOM05D005950 ORTHO05D020170 8.6e-16 88.6 59 69.5
Zm00001eb187530 Zea mays HOM05D006345 ORTHO05D007428 3.6e-14 83.2 63 60.3
Peaxi162Scf00968g00313 Petunia axillaris HOM05D005950 ORTHO05D305879 4.7e-14 82.8 175 37.7
C05p26860 Brassica napus HOM05D005950 ORTHO05D020170 8.9e-13 78.6 52 69.2
AL1G56270 Arabidopsis lyrata HOM05D005950 ORTHO05D000283 2.0e-12 77.4 62 58.1
CDE06G1299 Ceratophyllum demersum HOM05D005950 ORTHO05D130736 5.8e-12 75.9 44 77.3
BolC5t31405H Brassica oleracea HOM05D005950 ORTHO05D020170 2.2e-11 73.9 49 67.3
A09p37930 Brassica napus HOM05D005950 ORTHO05D020170 2.4e-10 70.5 53 62.3
Peaxi162Scf00141g00098 Petunia axillaris HOM05D005950 ORTHO05D306108 5.4e-10 69.3 45 73.3
Glyma.10G298600 Glycine max HOM05D005950 ORTHO05D020170 1.2e-09 68.2 46 65.2
AL4G33820 Arabidopsis lyrata HOM05D005950 ORTHO05D080589 3.0e-08 63.5 82 45.1


User provided reference genes

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