Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028384 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.0e-199 699.5 552 100.0
Solyc05g012570.3 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.8e-55 220.7 394 55.1
Sopen05g007400 Solanum pennellii HOM05D003853 ORTHO05D004171 1.8e-54 218.0 409 57.0
Sopen05g007410 Solanum pennellii HOM05D003853 ORTHO05D004171 1.4e-51 208.4 158 86.1
CAN.G1340.8 Capsicum annuum HOM05D003853 ORTHO05D004171 5.4e-43 179.9 263 49.0
Nitab4.5_0000334g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.2e-36 157.9 285 41.8
Nitab4.5_0015741g0010 Nicotiana tabacum HOM05D003853 ORTHO05D004171 1.1e-35 155.6 207 61.8
Peaxi162Scf00314g00031 Petunia axillaris HOM05D003853 ORTHO05D004171 3.8e-28 130.6 168 61.3
Gohir.A03G103000 Gossypium hirsutum HOM05D003853 ORTHO05D004171 4.6e-18 97.1 134 47.8
SGA_v2.0_scaffold36G14434 Striga asiatica HOM05D003853 ORTHO05D004171 1.3e-17 95.5 107 50.5
MSTRG.7763 Avicennia marina HOM05D003853 ORTHO05D004171 2.3e-17 94.7 175 40.6
Gorai.005G143900 Gossypium raimondii HOM05D003853 ORTHO05D004171 3.9e-17 94.0 134 46.3
unitig_699.g19910 Utricularia gibba HOM05D003853 ORTHO05D004171 8.7e-17 92.8 111 51.4
Gohir.D02G128200 Gossypium hirsutum HOM05D003853 ORTHO05D004171 1.1e-16 92.4 134 45.5
Duzib251G0287 Durio zibethinus HOM05D003853 ORTHO05D004171 3.3e-16 90.9 132 46.2
Peaxi162Scf00314g00022 Petunia axillaris HOM05D003853 ORTHO05D004171 3.3e-16 90.9 178 43.8
ECA234G0349 Erigeron canadensis HOM05D003853 ORTHO05D004171 4.3e-16 90.5 160 39.4
SalBow2G1698 Salvia bowleyana HOM05D003853 ORTHO05D004171 7.4e-16 89.7 154 41.6
SalBow2G1975 Salvia bowleyana HOM05D003853 ORTHO05D004171 7.4e-16 89.7 103 52.4
SGA_v2.0_scaffold16G07759 Striga asiatica HOM05D003853 ORTHO05D004171 1.3e-15 89.0 166 41.6
AL5G13190 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 1.7e-15 88.6 126 47.6
Migut.L01216 Erythranthe guttata HOM05D003853 ORTHO05D004171 2.8e-15 87.8 171 38.6
Glyma.07G226567 Glycine max HOM05D003853 ORTHO05D004171 4.8e-15 87.0 80 60.0
Glyma.07G226633 Glycine max HOM05D003853 ORTHO05D004171 4.8e-15 87.0 80 60.0
COL.COLO4_27926 Corchorus olitorius HOM05D003853 ORTHO05D004171 6.3e-15 86.7 130 41.5
Nitab4.5_0002806g0050 Nicotiana tabacum HOM05D003853 ORTHO05D004171 6.3e-15 86.7 94 50.0
Rhsim03G0019300 Rhododendron simsii HOM05D003853 ORTHO05D004171 1.1e-14 85.9 304 33.9
Glyma.20G027200 Glycine max HOM05D003853 ORTHO05D004171 1.4e-14 85.5 67 65.7
A06p43140 Brassica napus HOM05D003853 ORTHO05D004171 1.8e-14 85.1 129 45.7
VMungo0251G2653 Vigna mungo HOM05D003853 ORTHO05D004171 1.8e-14 85.1 76 63.2
Potri.010G161200 Populus trichocarpa HOM05D003853 ORTHO05D004171 2.4e-14 84.7 89 51.7
Phvul.002G168000 Phaseolus vulgaris HOM05D003853 ORTHO05D004171 3.1e-14 84.3 76 60.5
Thecc.02G335600 Theobroma cacao HOM05D003853 ORTHO05D004171 3.1e-14 84.3 72 61.1
Sp2g14360 Schrenkiella parvula HOM05D003853 ORTHO05D004171 5.3e-14 83.6 126 53.2
Lj4g0005239 Lotus japonicus HOM05D003853 ORTHO05D004171 6.9e-14 83.2 92 52.2
Lsat_1_v5_gn_4_11980 Lactuca sativa HOM05D003853 ORTHO05D004171 9.1e-14 82.8 93 47.3
AT2G03440 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 1.2e-13 82.4 125 51.2
BcaC06g33998 Brassica carinata HOM05D003853 ORTHO05D004171 1.2e-13 82.4 129 45.0
C07p33870 Brassica napus HOM05D003853 ORTHO05D004171 1.2e-13 82.4 129 45.0
BolC7t43901H Brassica oleracea HOM05D003853 ORTHO05D004171 1.2e-13 82.4 129 45.0
BraA06t27202Z Brassica rapa HOM05D003853 ORTHO05D004171 1.2e-13 82.4 129 45.0
Manes.01G030100 Manihot esculenta HOM05D003853 ORTHO05D004171 1.5e-13 82.0 81 50.6
Sopen04g001500 Solanum pennellii HOM05D003853 ORTHO05D004171 2.0e-13 81.6 127 44.1
BcaC06g31183 Brassica carinata HOM05D003853 ORTHO05D004171 2.6e-13 81.3 130 41.5
BolC8t49263H Brassica oleracea HOM05D003853 ORTHO05D004171 2.6e-13 81.3 102 52.0
Carub.0005s0241 Capsella rubella HOM05D003853 ORTHO05D004171 2.6e-13 81.3 65 61.5
Aa31LG4G16180 Aethionema arabicum HOM05D003853 ORTHO05D004171 3.4e-13 80.9 103 50.5
PSO017G6890 Papaver somniferum HOM05D003853 ORTHO05D004171 3.4e-13 80.9 77 57.1
Sabra10G0122600 Salix brachista HOM05D003853 ORTHO05D004171 3.4e-13 80.9 79 55.7
Sabra10G0122700 Salix brachista HOM05D003853 ORTHO05D004171 3.4e-13 80.9 79 55.7
BcaB03g13123 Brassica carinata HOM05D003853 ORTHO05D004171 4.5e-13 80.5 100 52.0
BcaB07g30301 Brassica carinata HOM05D003853 ORTHO05D004171 4.5e-13 80.5 139 43.2
BraA08t35142Z Brassica rapa HOM05D003853 ORTHO05D004171 4.5e-13 80.5 101 52.5
BcaB03g13120 Brassica carinata HOM05D003853 ORTHO05D004171 5.9e-13 80.1 160 46.2
BcaC07g38709 Brassica carinata HOM05D003853 ORTHO05D004171 5.9e-13 80.1 102 51.0
C08p16390 Brassica napus HOM05D003853 ORTHO05D004171 5.9e-13 80.1 102 51.0
MELO3C012136.2 Cucumis melo HOM05D003853 ORTHO05D004171 5.9e-13 80.1 93 49.5
Thhalv10004968m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 5.9e-13 80.1 68 57.4
HanXRQChr10g0308121 Helianthus annuus HOM05D003853 ORTHO05D004171 5.9e-13 80.1 153 35.9
BcaC03g17214 Brassica carinata HOM05D003853 ORTHO05D004171 7.7e-13 79.7 73 53.4
C02p51440 Brassica napus HOM05D003853 ORTHO05D004171 7.7e-13 79.7 73 53.4
BolC2t11232H Brassica oleracea HOM05D003853 ORTHO05D004171 7.7e-13 79.7 73 53.4
BraA02t08366Z Brassica rapa HOM05D003853 ORTHO05D004171 7.7e-13 79.7 73 53.4
Cpa.g.sc1.97 Carica papaya HOM05D003853 ORTHO05D004171 7.7e-13 79.7 97 48.5
Thhalv10008975m.g Eutrema salsugineum HOM05D003853 ORTHO05D004171 7.7e-13 79.7 103 48.5
Lalb_Chr05g0215091 Lupinus albus HOM05D003853 ORTHO05D004171 7.7e-13 79.7 71 56.3
CiPaw.05G127700 Carya illinoinensis HOM05D003853 ORTHO05D004171 1.0e-12 79.3 96 44.8
Ah.02g126530 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.3e-12 79.0 68 58.8
Carub.0001s1363 Capsella rubella HOM05D003853 ORTHO05D004171 1.3e-12 79.0 103 47.6
Cfa008902 Carpinus fangiana HOM05D003853 ORTHO05D004171 1.3e-12 79.0 68 63.2
Aa31LG2G7160 Aethionema arabicum HOM05D006961 ORTHO05D008809 1.7e-12 78.6 129 47.3
CARHR014300 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-12 78.6 115 48.7
CARHR145780 Cardamine hirsuta HOM05D003853 ORTHO05D004171 1.7e-12 78.6 85 49.4
CsaV3_5G033160 Cucumis sativus L. HOM05D003853 ORTHO05D004171 1.7e-12 78.6 93 49.5
Sed0005785 Sechium edule HOM05D003853 ORTHO05D004171 1.7e-12 78.6 161 40.4
TPR.G34052 Trifolium pratense HOM05D003853 ORTHO05D004171 1.7e-12 78.6 142 40.8
PSO478G4998 Papaver somniferum HOM05D003853 ORTHO05D004171 2.2e-12 78.2 105 47.6
Oeu048150.1 Olea europaea HOM05D003853 ORTHO05D004171 2.9e-12 77.8 68 57.4
PGSC0003DMG400035643 Solanum tuberosum HOM05D003853 ORTHO05D004171 2.9e-12 77.8 125 42.4
Psat7g135240 Pisum sativum HOM05D003853 ORTHO05D004171 3.8e-12 77.4 83 55.4
Sp1g12030 Schrenkiella parvula HOM05D003853 ORTHO05D004171 3.8e-12 77.4 162 37.7
AUR62007951 Chenopodium quinoa HOM05D003853 ORTHO05D004171 5.0e-12 77.0 78 52.6
MSTRG.735 Avicennia marina HOM05D003853 ORTHO05D004171 6.5e-12 76.6 116 47.4
A02p33450 Brassica napus HOM05D003853 ORTHO05D004171 6.5e-12 76.6 73 52.1
DCAR_027453 Daucus carota HOM05D003853 ORTHO05D004171 6.5e-12 76.6 126 43.7
Medtr4g082860 Medicago truncatula HOM05D003853 ORTHO05D004171 6.5e-12 76.6 151 39.7
Potri.008G093200 Populus trichocarpa HOM05D003853 ORTHO05D004171 6.5e-12 76.6 80 52.5
AUR62003131 Chenopodium quinoa HOM05D003853 ORTHO05D004171 8.5e-12 76.3 67 56.7
Haze_11978 Corylus avellana HOM05D003853 ORTHO05D004171 8.5e-12 76.3 68 61.8
TAR622G0811 Trochodendron aralioides HOM05D003853 ORTHO05D004171 8.5e-12 76.3 78 52.6
Nn4g23335 Nelumbo nucifera HOM05D003853 ORTHO05D004171 1.1e-11 75.9 82 46.3
A08p32180 Brassica napus HOM05D003853 ORTHO05D004171 1.4e-11 75.5 61 63.9
QL03p071021 Quercus lobata HOM05D003853 ORTHO05D004171 1.4e-11 75.5 68 61.8
HPP92_023639 Vanilla planifolia HOM05D003853 ORTHO05D004171 1.4e-11 75.5 76 52.6
Ah.03g139140 Amaranthus hybridus HOM05D003853 ORTHO05D004171 1.9e-11 75.1 77 51.9
Ca_18813_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 1.9e-11 75.1 83 51.8
TPR.G2267 Trifolium pratense HOM05D003853 ORTHO05D004171 1.9e-11 75.1 73 58.9
CSS0045101 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 2.5e-11 74.7 72 52.8
CDE02G2907 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 2.5e-11 74.7 78 51.3
Duzib251G0928 Durio zibethinus HOM05D003853 ORTHO05D004171 2.5e-11 74.7 133 48.1
Medtr4g082830 Medicago truncatula HOM05D003853 ORTHO05D004171 2.5e-11 74.7 76 55.3
Nitab4.5_0000014g0290 Nicotiana tabacum HOM05D003853 ORTHO05D004171 2.5e-11 74.7 166 36.7
Solyc04g005480.1 Solanum lycopersicum HOM05D003853 ORTHO05D004171 2.5e-11 74.7 155 38.1
MSTRG.2322 Avicennia marina HOM05D003853 ORTHO05D004171 3.2e-11 74.3 72 54.2
CiPaw.05G127600 Carya illinoinensis HOM05D003853 ORTHO05D004171 3.2e-11 74.3 128 56.2
ClCG05G023860 Citrullus lanatus HOM05D003853 ORTHO05D004171 3.2e-11 74.3 112 45.5
QL03p070993 Quercus lobata HOM05D003853 ORTHO05D004171 3.2e-11 74.3 169 35.5
Thecc.02G335500 Theobroma cacao HOM05D003853 ORTHO05D004171 3.2e-11 74.3 127 40.9
AL1G25770 Arabidopsis lyrata HOM05D003853 ORTHO05D004171 4.2e-11 73.9 162 38.9
Dinv16707 Davidia involucrata HOM05D003853 ORTHO05D004171 4.2e-11 73.9 68 58.8
Sed0019389 Sechium edule HOM05D003853 ORTHO05D004171 5.5e-11 73.6 96 47.9
AT1G13930 Arabidopsis thaliana HOM05D003853 ORTHO05D004171 7.2e-11 73.2 102 45.1
ECA246G1290 Erigeron canadensis HOM05D003853 ORTHO05D004171 9.4e-11 72.8 85 47.1
Eucgr.B03178 Eucalyptus grandis HOM05D003853 ORTHO05D004171 9.4e-11 72.8 139 53.2
Hma1.2p1_0354F.1_g133590 Hydrangea macrophylla HOM05D003853 ORTHO05D004171 1.2e-10 72.4 68 57.4
MD13G1065700 Malus domestica HOM05D003853 ORTHO05D004171 1.2e-10 72.4 74 50.0
Actinidia12318 Actinidia chinensis HOM05D003853 ORTHO05D004171 1.6e-10 72.0 68 63.2
Lj6P782T102 Lonicera japonica HOM05D003853 ORTHO05D004171 1.6e-10 72.0 92 44.6
PGR102G0417 Punica granatum HOM05D003853 ORTHO05D004171 2.1e-10 71.6 80 53.8
PGR102G3239 Punica granatum HOM05D003853 ORTHO05D004171 2.1e-10 71.6 80 53.8
COL.COLO4_27925 Corchorus olitorius HOM05D003853 ORTHO05D004171 2.7e-10 71.2 143 43.4
Psat7g135200 Pisum sativum HOM05D003853 ORTHO05D004171 2.7e-10 71.2 98 49.0
ATR0111G024 Amborella trichopoda HOM05D003853 ORTHO05D004171 3.6e-10 70.9 114 43.0
AUR62003133 Chenopodium quinoa HOM05D003853 ORTHO05D004171 3.6e-10 70.9 94 45.7
TWI75G0276 Tripterygium wilfordii HOM05D003853 ORTHO05D004171 3.6e-10 70.9 77 45.5
HPP92_023625 Vanilla planifolia HOM05D003853 ORTHO05D004171 3.6e-10 70.9 76 50.0
CSS0028215 Camellia sinensis var. sinensis HOM05D003853 ORTHO05D004171 4.7e-10 70.5 72 51.4
Lalb_Chr17g0341041 Lupinus albus HOM05D003853 ORTHO05D004171 4.7e-10 70.5 73 52.1
Sc04g0007730 Simmondsia chinensis HOM05D003853 ORTHO05D004171 4.7e-10 70.5 67 56.7
BcaC07g38710 Brassica carinata HOM05D003853 ORTHO05D004171 6.1e-10 70.1 101 46.5
BolC8t49264H Brassica oleracea HOM05D003853 ORTHO05D004171 6.1e-10 70.1 110 43.6
C08p16400 Brassica napus HOM05D003853 ORTHO05D004171 7.9e-10 69.7 110 43.6
Ca_04944_v3 Cicer arietinum L. HOM05D003853 ORTHO05D004171 7.9e-10 69.7 79 53.2
QL03p071009 Quercus lobata HOM05D003853 ORTHO05D004171 7.9e-10 69.7 157 44.6
Medtr5g043660 Medicago truncatula HOM05D003853 ORTHO05D004171 1.8e-09 68.6 87 47.1
Sc04g0007740 Simmondsia chinensis HOM05D003853 ORTHO05D004171 1.8e-09 68.6 134 37.3
Lj2g0020869 Lotus japonicus HOM05D003853 ORTHO05D004171 2.3e-09 68.2 68 54.4
Migut.E00060 Erythranthe guttata HOM05D003853 ORTHO05D004171 3.0e-09 67.8 167 32.9
Sabra08G0070000 Salix brachista HOM05D003853 ORTHO05D004171 3.0e-09 67.8 80 50.0
SGA_v2.0_scaffold287G47154 Striga asiatica HOM05D003853 ORTHO05D004171 3.0e-09 67.8 99 46.5
Ah.03g139160 Amaranthus hybridus HOM05D003853 ORTHO05D004171 3.9e-09 67.4 76 51.3
HanXRQChr15g0477051 Helianthus annuus HOM05D003853 ORTHO05D004171 3.9e-09 67.4 81 46.9
TPR.G34063 Trifolium pratense HOM05D003853 ORTHO05D004171 3.9e-09 67.4 63 58.7
CDE02G1866 Ceratophyllum demersum HOM05D003853 ORTHO05D004171 6.7e-09 66.6 79 43.0
vmacro22354 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.7e-09 66.6 64 60.9
vmacro22355 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 6.7e-09 66.6 66 59.1
QL03p070977 Quercus lobata HOM05D003853 ORTHO05D004171 8.8e-09 66.2 68 54.4
AUR62003132 Chenopodium quinoa HOM05D003853 ORTHO05D004171 2.0e-08 65.1 71 49.3
MBI16_g00500_MAGBIO Magnolia biondii HOM05D003853 ORTHO05D004171 3.3e-08 64.3 97 41.2
AUR62007952 Chenopodium quinoa HOM05D003853 ORTHO05D004171 4.4e-08 63.9 62 58.1
Cc11_g12330 Coffea canephora HOM05D003853 ORTHO05D004171 7.4e-08 63.2 88 42.0
MD16G1064200 Malus domestica HOM05D003853 ORTHO05D004171 7.4e-08 63.2 74 45.9
Ciclev10033000m.g Citrus clementina HOM05D003853 ORTHO05D004171 9.7e-08 62.8 95 43.2
FAN12G3704 Fragaria x ananassa HOM05D002141 ORTHO05D002119 1.3e-07 62.4 103 38.8
Psat2g127960 Pisum sativum HOM05D003853 ORTHO05D004171 1.3e-07 62.4 82 45.1
FAN17G1589 Fragaria x ananassa HOM05D003853 ORTHO05D004171 1.7e-07 62.0 103 38.8
Lsat_1_v5_gn_3_56161 Lactuca sativa HOM05D003853 ORTHO05D004171 1.7e-07 62.0 78 47.4
SEGI_33923 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 2.2e-07 61.6 79 50.6
vmacro22356 Vaccinium macrocarpon HOM05D003853 ORTHO05D004171 2.8e-07 61.2 66 53.0
Actinidia28167 Actinidia chinensis HOM05D003853 ORTHO05D004171 3.7e-07 60.8 82 45.1
A08p32170 Brassica napus HOM05D003853 ORTHO05D004171 4.8e-07 60.5 75 45.3
BraA08t35141Z Brassica rapa HOM05D003853 ORTHO05D004171 8.2e-07 59.7 110 40.0
Prupe.1G282500 Prunus persica HOM05D003853 ORTHO05D004171 1.1e-06 59.3 127 33.9
SEGI_07999 Sequoiadendron giganteum HOM05D003853 ORTHO05D004171 1.1e-06 59.3 92 44.6
Cpa.g.sc1.96 Carica papaya HOM05D003853 ORTHO05D004171 2.4e-06 58.2 121 35.5
CANSAT64G1198 Cannabis sativa HOM05D003853 ORTHO05D004171 4.1e-06 57.4 47 57.4
Os10g0330000 Oryza sativa ssp. japonica HOM05D003853 ORTHO05D004171 4.1e-06 57.4 71 49.3
Zm00001eb334140 Zea mays HOM05D003853 ORTHO05D004171 6.9e-06 56.6 82 47.6


User provided reference genes

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