Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028375 Solanum tuberosum HOM05D001391 ORTHO05D005432 1.2e-197 693.0 359 100.0
Sopen05g007170 Solanum pennellii HOM05D001391 ORTHO05D005432 9.6e-182 640.2 337 97.9
CAN.G616.39 Capsicum annuum HOM05D001391 ORTHO05D005432 8.1e-181 637.1 345 95.4
Nitab4.5_0001487g0070 Nicotiana tabacum HOM05D001391 ORTHO05D005432 2.2e-170 602.4 344 91.9
Nitab4.5_0000231g0390 Nicotiana tabacum HOM05D001391 ORTHO05D005432 1.3e-165 586.6 335 91.6
SGA_v2.0_scaffold16G07780 Striga asiatica HOM05D001391 ORTHO05D005432 2.0e-155 552.7 334 83.2
DCAR_007192 Daucus carota HOM05D001391 ORTHO05D005432 1.2e-152 543.5 336 81.8
Cc11_g12040 Coffea canephora HOM05D001391 ORTHO05D005432 2.3e-151 539.3 342 81.3
Lj3C1030G23 Lonicera japonica HOM05D001391 ORTHO05D005432 2.2e-149 532.7 311 84.9
CiPaw.06G092300 Carya illinoinensis HOM05D001391 ORTHO05D005432 2.8e-149 532.3 341 78.0
DCAR_030039 Daucus carota HOM05D001391 ORTHO05D005432 1.1e-148 530.4 336 78.9
Manes.01G028100 Manihot esculenta HOM05D001391 ORTHO05D005432 1.8e-148 529.6 328 79.6
Sabra10G0120500 Salix brachista HOM05D001391 ORTHO05D005432 1.7e-146 523.1 339 79.1
GSVIVG01012214001 Vitis vinifera HOM05D001391 ORTHO05D005432 2.2e-146 522.7 313 82.7
Potri.010G158700 Populus trichocarpa HOM05D001391 ORTHO05D005432 1.9e-145 519.6 337 77.4
TAR629G1471 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.5e-145 518.1 335 77.9
TAR629G2660 Trochodendron aralioides HOM05D001391 ORTHO05D005432 5.5e-145 518.1 335 77.9
QL03p071791 Quercus lobata HOM05D001391 ORTHO05D005432 7.2e-145 517.7 329 79.0
QL03p071836 Quercus lobata HOM05D001391 ORTHO05D005432 1.2e-144 516.9 334 77.5
ECA246G4329 Erigeron canadensis HOM05D001391 ORTHO05D005432 1.6e-144 516.5 335 77.9
QL03p072323 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-144 516.5 340 76.8
QL03p072348 Quercus lobata HOM05D001391 ORTHO05D005432 1.6e-144 516.5 329 79.3
Dinv34072 Davidia involucrata HOM05D001391 ORTHO05D005432 2.7e-144 515.8 311 83.3
HanXRQChr15g0477081 Helianthus annuus HOM05D001391 ORTHO05D005432 4.6e-144 515.0 327 79.5
FvH4_4g30104 Fragaria vesca HOM05D001391 ORTHO05D005432 6.1e-144 514.6 338 76.6
RcHm_v2.0_Chr4g0438441 Rosa chinensis HOM05D001391 ORTHO05D005432 2.3e-143 512.7 304 82.6
Oeu048144.1 Olea europaea HOM05D001391 ORTHO05D005432 3.0e-143 512.3 293 86.7
Sed0003297 Sechium edule HOM05D001391 ORTHO05D005432 3.0e-143 512.3 334 76.6
TWI31G1273 Tripterygium wilfordii HOM05D001391 ORTHO05D005432 3.0e-143 512.3 334 77.8
FAN07G1596 Fragaria x ananassa HOM05D001391 ORTHO05D005432 5.1e-143 511.5 307 81.1
FAN22G1389 Fragaria x ananassa HOM05D001391 ORTHO05D005432 6.7e-143 511.1 343 75.5
MELO3C011425.2 Cucumis melo HOM05D001391 ORTHO05D005432 8.8e-143 510.8 330 77.0
FAN17G2247 Fragaria x ananassa HOM05D001391 ORTHO05D002605 1.1e-142 510.4 339 75.5
QL03p071994 Quercus lobata HOM05D001391 ORTHO05D005432 4.3e-142 508.4 328 77.7
CSS0007431 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.4e-142 507.7 310 81.6
CSS0028231 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 7.4e-142 507.7 310 81.6
PGR102G1705 Punica granatum HOM05D001391 ORTHO05D005432 9.7e-142 507.3 300 83.3
QL03p072246 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-141 506.1 366 71.6
QL06p022506 Quercus lobata HOM05D001391 ORTHO05D005432 2.2e-141 506.1 306 82.4
THA.LOC104824058 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 4.8e-141 505.0 334 75.7
Glyma.20G025600 Glycine max HOM05D001391 ORTHO05D005432 6.3e-141 504.6 328 77.7
Sed0027135 Sechium edule HOM05D001391 ORTHO05D005432 8.2e-141 504.2 330 76.1
PSO017G5650 Papaver somniferum HOM05D001391 ORTHO05D005432 2.4e-140 502.7 330 77.9
BcaB07g30667 Brassica carinata HOM05D001391 ORTHO05D005432 4.1e-140 501.9 334 75.7
Actinidia16169 Actinidia chinensis HOM05D001391 ORTHO05D005432 5.3e-140 501.5 287 86.4
HanXRQChr12g0375271 Helianthus annuus HOM05D001391 ORTHO05D005432 5.3e-140 501.5 336 75.9
PSO478G1327 Papaver somniferum HOM05D001391 ORTHO05D005432 9.1e-140 500.7 330 77.6
A09p24460 Brassica napus HOM05D001391 ORTHO05D005432 1.2e-139 500.4 334 75.4
CANSAT64G0915 Cannabis sativa HOM05D001391 ORTHO05D005432 1.2e-139 500.4 307 79.5
MD16G1061600 Malus domestica HOM05D001391 ORTHO05D005432 1.2e-139 500.4 330 76.7
BraA09t38039Z Brassica rapa HOM05D001391 ORTHO05D005432 1.5e-139 500.0 334 75.4
Eucgr.B03154 Eucalyptus grandis HOM05D001391 ORTHO05D005432 2.6e-139 499.2 307 79.2
AL5G13280 Arabidopsis lyrata HOM05D001391 ORTHO05D005432 7.7e-139 497.7 334 75.1
AT2G03510 Arabidopsis thaliana HOM05D001391 ORTHO05D005432 7.7e-139 497.7 334 75.1
Ca_18800_v3 Cicer arietinum L. HOM05D001391 ORTHO05D005432 7.7e-139 497.7 335 75.8
Haze_11913 Corylus avellana HOM05D001391 ORTHO05D005432 1.0e-138 497.3 290 83.4
Aqoxy3G03632 Aquilegia oxysepala HOM05D001391 ORTHO05D005432 1.7e-138 496.5 312 80.4
BcaC04g21485 Brassica carinata HOM05D001391 ORTHO05D005432 2.2e-138 496.1 334 74.9
C09p31260 Brassica napus HOM05D001391 ORTHO05D005432 2.2e-138 496.1 334 74.9
BolC9t55982H Brassica oleracea HOM05D001391 ORTHO05D005432 2.2e-138 496.1 334 74.9
Prupe.1G286500 Prunus persica HOM05D001391 ORTHO05D005432 2.9e-138 495.7 337 75.4
VMungo0251G0716 Vigna mungo HOM05D001391 ORTHO05D005432 3.8e-138 495.4 330 75.5
Duzib248G0196 Durio zibethinus HOM05D001391 ORTHO05D005432 5.0e-138 495.0 339 73.2
arahy.Tifrunner.gnm1.ann1.52K398 Arachis hypogaea HOM05D001391 ORTHO05D005432 6.5e-138 494.6 335 74.9
Carub.0005s0265 Capsella rubella HOM05D001391 ORTHO05D005432 6.5e-138 494.6 334 74.3
Lsat_1_v5_gn_3_53800 Lactuca sativa HOM05D001391 ORTHO05D005432 8.5e-138 494.2 340 75.6
Lj4g0006249 Lotus japonicus HOM05D001391 ORTHO05D005432 8.5e-138 494.2 330 74.2
Sp2g14420 Schrenkiella parvula HOM05D001391 ORTHO05D005432 8.5e-138 494.2 335 74.9
Atru.chr11.1633 Acer truncatum HOM05D001391 ORTHO05D005432 1.4e-137 493.4 334 74.3
arahy.Tifrunner.gnm1.ann1.G55KBL Arachis hypogaea HOM05D001391 ORTHO05D005432 1.4e-137 493.4 308 79.5
Psat7g134560 Pisum sativum HOM05D001391 ORTHO05D005432 1.4e-137 493.4 323 76.5
Ciclev10031905m.g Citrus clementina HOM05D001391 ORTHO05D005432 1.9e-137 493.0 349 71.9
THA.LOC104805193 Tarenaya hassleriana HOM05D001391 ORTHO05D005432 1.9e-137 493.0 335 76.7
CDE05G0079 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.5e-137 492.7 320 76.2
Thhalv10004477m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 2.5e-137 492.7 334 74.3
QL03p071709 Quercus lobata HOM05D001391 ORTHO05D005432 4.2e-137 491.9 340 72.6
Aa31LG2G7090 Aethionema arabicum HOM05D001391 ORTHO05D005432 5.5e-137 491.5 330 74.5
CARHR145860 Cardamine hirsuta HOM05D001391 ORTHO05D005432 9.4e-137 490.7 334 73.7
unitig_22.g6493 Utricularia gibba HOM05D001391 ORTHO05D005432 7.9e-136 487.6 342 74.6
Lalb_Chr05g0219941 Lupinus albus HOM05D001391 ORTHO05D005432 1.4e-135 486.9 330 74.8
MD13G1063100 Malus domestica HOM05D001391 ORTHO05D005432 1.4e-135 486.9 338 74.6
BcaC03g17224 Brassica carinata HOM05D001391 ORTHO05D005432 3.9e-135 485.3 334 73.4
C02p51560 Brassica napus HOM05D001391 ORTHO05D005432 3.9e-135 485.3 334 73.4
BolC2t11243H Brassica oleracea HOM05D001391 ORTHO05D005432 3.9e-135 485.3 334 73.4
Thecc.02G331500 Theobroma cacao HOM05D001391 ORTHO05D005432 5.1e-135 485.0 290 81.7
Medtr4g083100 Medicago truncatula HOM05D001391 ORTHO05D005432 1.1e-134 483.8 308 77.9
PSO478G2440 Papaver somniferum HOM05D001391 ORTHO05D005432 1.5e-134 483.4 325 76.0
TPR.G34031 Trifolium pratense HOM05D001391 ORTHO05D005432 2.0e-134 483.0 310 76.8
Ah.02g126880 Amaranthus hybridus HOM05D001391 ORTHO05D005432 2.6e-134 482.6 337 73.0
Dinv16729 Davidia involucrata HOM05D001391 ORTHO05D005432 3.7e-133 478.8 298 81.2
Zm00001eb393170 Zea mays HOM05D001391 ORTHO05D005432 1.4e-132 476.9 301 79.1
AUR62003104 Chenopodium quinoa HOM05D001391 ORTHO05D005432 9.1e-132 474.2 298 78.5
QL03p071737 Quercus lobata HOM05D001391 ORTHO05D005432 9.1e-132 474.2 310 76.1
COL.COLO4_27891 Corchorus olitorius HOM05D001391 ORTHO05D005432 1.2e-131 473.8 343 70.6
RcHm_v2.0_Chr4g0438461 Rosa chinensis HOM05D001391 ORTHO05D005432 1.5e-131 473.4 336 70.8
ATR0064G010 Amborella trichopoda HOM05D001391 ORTHO05D005432 4.5e-131 471.9 279 81.4
Gorai.013G093700 Gossypium raimondii HOM05D001391 ORTHO05D005432 2.9e-130 469.2 327 70.3
EL10Ac6g14993 Beta vulgaris HOM05D001391 ORTHO05D005432 3.2e-129 465.7 293 78.5
Gohir.D13G081800 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.0e-127 460.7 327 69.4
Peaxi162Scf00175g00121 Petunia axillaris HOM05D001391 ORTHO05D005432 3.0e-127 459.1 245 92.2
Migut.L01194 Erythranthe guttata HOM05D001391 ORTHO05D005432 6.7e-127 458.0 293 78.2
TAR622G0883 Trochodendron aralioides HOM05D001391 ORTHO05D005432 1.3e-125 453.8 361 67.6
HPP92_020445 Vanilla planifolia HOM05D001391 ORTHO05D005432 2.2e-125 453.0 336 70.5
CsaV3_6G032550 Cucumis sativus L. HOM05D001391 ORTHO05D005432 1.1e-124 450.7 330 70.3
CsaV3_6G033630 Cucumis sativus L. HOM05D001391 ORTHO05D005432 5.3e-124 448.4 361 66.2
Zm00001eb020150 Zea mays HOM05D001391 ORTHO05D005432 9.1e-124 447.6 329 70.5
Sabra08G0071900 Salix brachista HOM05D001391 ORTHO05D005432 5.9e-123 444.9 352 68.2
QL03p071961 Quercus lobata HOM05D001391 ORTHO05D005432 2.9e-122 442.6 300 75.3
SMO364G0146 Selaginella moellendorffii HOM05D001391 ORTHO05D005432 2.9e-122 442.6 304 72.4
vmacro01316 Vaccinium macrocarpon HOM05D001391 ORTHO05D005432 5.0e-122 441.8 347 70.0
ClCG08G010360 Citrullus lanatus HOM05D001391 ORTHO05D005432 2.5e-121 439.5 315 71.4
Hund05837 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.6e-120 436.8 293 74.4
Phvul.002G102100 Phaseolus vulgaris HOM05D001391 ORTHO05D005432 1.0e-119 434.1 295 73.6
Pp3c1_8060 Physcomitrium patens HOM05D001391 ORTHO05D005432 1.4e-119 433.7 331 65.6
Lj6C779T14 Lonicera japonica HOM05D001391 ORTHO05D005432 4.0e-119 432.2 384 62.8
Pp3c2_37740 Physcomitrium patens HOM05D001391 ORTHO05D005432 5.7e-118 428.3 326 65.3
AagrBONN_evm.TU.Sc2ySwM_228.3454 Anthoceros agrestis HOM05D001391 ORTHO05D005432 4.5e-115 418.7 334 62.3
Mapoly0041s0056 Marchantia polymorpha HOM05D001391 ORTHO05D005432 1.7e-114 416.8 325 64.3
Solyc05g012340.4 Solanum lycopersicum HOM05D001391 ORTHO05D005432 1.7e-114 416.8 218 99.5
Glyma.07G225600 Glycine max HOM05D001391 ORTHO05D005432 1.2e-112 410.6 248 81.5
Cpa.g.sc1.121 Carica papaya HOM05D001391 ORTHO05D005432 3.0e-111 406.0 330 67.0
CBR_g22084 Chara braunii HOM05D001391 ORTHO05D005432 2.0e-110 403.3 278 70.1
Sc11g0002420 Simmondsia chinensis HOM05D001391 ORTHO05D005432 8.3e-109 397.9 298 68.8
Thhalv10022792m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.7e-107 391.3 329 61.4
Thhalv10022979m.g Eutrema salsugineum HOM05D001391 ORTHO05D005432 7.7e-107 391.3 329 61.4
Nn4g23419 Nelumbo nucifera HOM05D001391 ORTHO05D005432 2.5e-105 386.3 336 63.1
Eucgr.B03155 Eucalyptus grandis HOM05D001391 ORTHO05D005432 8.0e-104 381.3 242 75.6
Rhsim12G0074900 Rhododendron simsii HOM05D001391 ORTHO05D005432 3.1e-100 369.4 279 70.6
AUR62007921 Chenopodium quinoa HOM05D001391 ORTHO05D005432 5.0e-98 362.1 294 63.6
MBI16_g24179_MAGBIO Magnolia biondii HOM05D001391 ORTHO05D005432 1.9e-97 360.1 326 59.8
Thecc.02G331800 Theobroma cacao HOM05D001391 ORTHO05D005432 2.2e-93 346.7 226 73.9
CDE02G0606 Ceratophyllum demersum HOM05D001391 ORTHO05D005432 2.4e-92 343.2 214 75.2
Gohir.A13G082200 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.9e-89 333.6 222 70.3
Nn3g17437 Nelumbo nucifera HOM05D001391 ORTHO05D005432 6.6e-82 308.5 334 53.3
CSS0036366 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 4.7e-80 302.4 213 75.1
Eucgr.B03159 Eucalyptus grandis HOM05D001391 ORTHO05D005432 3.3e-73 279.6 197 71.1
Gohir.D12G164650 Gossypium hirsutum HOM05D001391 ORTHO05D005432 6.6e-66 255.4 248 58.5
HanXRQChr08g0223901 Helianthus annuus HOM05D001391 ORTHO05D005432 2.4e-63 246.9 161 80.1
Hund25181 Selenicereus undatus HOM05D001391 ORTHO05D005432 1.5e-62 244.2 177 68.9
Gorai.008G177300 Gossypium raimondii HOM05D001391 ORTHO05D005432 8.4e-53 211.8 153 72.5
CSS0025210 Camellia sinensis var. sinensis HOM05D001391 ORTHO05D005432 5.8e-46 189.1 125 72.8
SEGI_06703 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 7.9e-35 152.1 104 76.0
SEGI_41081 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.5e-33 147.1 104 73.1
Gorai.008G177400 Gossypium raimondii HOM05D001391 ORTHO05D005432 1.6e-32 144.4 80 78.8
QL01p050908 Quercus lobata HOM05D001391 ORTHO05D005432 2.4e-31 140.6 133 54.9
QL03p071882 Quercus lobata HOM05D001391 ORTHO05D005432 6.9e-31 139.0 117 66.7
SEGI_37700 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 9.0e-31 138.7 95 74.7
Hma1.2p1_3404F.1_g335810 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 3.6e-27 126.7 104 71.2
Mapoly0004s0019 Marchantia polymorpha HOM05D001391 ORTHO05D005432 3.6e-27 126.7 346 28.3
Hma1.2p1_1826F.1_g304410 Hydrangea macrophylla HOM05D001391 ORTHO05D005432 2.2e-24 117.5 104 66.3
Gohir.A13G082366 Gossypium hirsutum HOM05D001391 ORTHO05D005432 1.2e-22 111.7 89 66.3
Hund25180 Selenicereus undatus HOM05D001391 ORTHO05D005432 2.2e-21 107.5 72 76.4
Os03g0421400 Oryza sativa ssp. japonica HOM05D001391 ORTHO05D005432 8.5e-21 105.5 77 67.5
SEGI_10839 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 1.6e-19 101.3 78 57.7
BcaB07g30295 Brassica carinata HOM05D001391 ORTHO05D005432 4.7e-19 99.8 79 70.9
SEGI_38290 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 2.8e-16 90.5 56 66.1
SEGI_28419 Sequoiadendron giganteum HOM05D001391 ORTHO05D005432 3.7e-16 90.1 72 61.1
QL01p050911 Quercus lobata HOM05D001391 ORTHO05D005432 9.1e-15 85.5 73 67.1
MD16G1164500 Malus domestica HOM05D001391 ORTHO05D005432 5.0e-13 79.7 43 76.7


User provided reference genes

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