Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028362 Solanum tuberosum HOM05D005225 ORTHO05D006830 5.7e-297 1023.5 510 100.0
Sopen05g006880 Solanum pennellii HOM05D005225 ORTHO05D006830 3.4e-289 997.7 509 96.7
CAN.G707.21 Capsicum annuum HOM05D005225 ORTHO05D006830 2.7e-278 961.4 508 93.1
Peaxi162Scf00175g00052 Petunia axillaris HOM05D005225 ORTHO05D006830 2.4e-255 885.2 486 89.1
Nitab4.5_0000231g0060 Nicotiana tabacum HOM05D005225 ORTHO05D006830 5.1e-237 824.3 440 91.6
Nitab4.5_0007734g0040 Nicotiana tabacum HOM05D005225 ORTHO05D006830 6.6e-237 823.9 441 92.1
Solyc05g012090.4 Solanum lycopersicum HOM05D005225 ORTHO05D006830 2.8e-235 818.5 418 95.7
Dinv34052 Davidia involucrata HOM05D005225 ORTHO05D006830 8.7e-229 797.0 507 77.3
Cfa008863 Carpinus fangiana HOM05D005225 ORTHO05D006830 8.1e-227 790.4 508 74.8
Ciclev10031260m.g Citrus clementina HOM05D005225 ORTHO05D006830 4.2e-223 778.1 506 73.7
RcHm_v2.0_Chr7g0212391 Rosa chinensis HOM05D005225 ORTHO05D006830 7.1e-223 777.3 508 74.2
Potri.008G097400 Populus trichocarpa HOM05D005225 ORTHO05D006830 1.2e-222 776.5 508 73.6
Sabra08G0073600 Salix brachista HOM05D005225 ORTHO05D006830 2.1e-222 775.8 508 73.2
QL03p073750 Quercus lobata HOM05D005225 ORTHO05D006830 3.9e-221 771.5 507 73.0
Cc11_g11810 Coffea canephora HOM05D005225 ORTHO05D006830 8.7e-221 770.4 506 73.5
Haze_11886 Corylus avellana HOM05D005225 ORTHO05D006830 8.7e-221 770.4 480 76.9
Manes.10G001000 Manihot esculenta HOM05D005225 ORTHO05D006830 7.4e-220 767.3 508 72.2
Thecc.02G327800 Theobroma cacao HOM05D005225 ORTHO05D006830 1.3e-219 766.5 505 72.5
Atru.chr11.1603 Acer truncatum HOM05D005225 ORTHO05D006830 1.6e-219 766.1 509 71.9
Prupe.1G566200 Prunus persica HOM05D005225 ORTHO05D006830 4.8e-219 764.6 508 72.0
CSS0003869 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 1.8e-218 762.7 508 73.2
FvH4_4g10620 Fragaria vesca HOM05D005225 ORTHO05D006830 5.3e-218 761.1 508 72.4
QL02p092646 Quercus lobata HOM05D005225 ORTHO05D006830 5.3e-218 761.1 507 71.8
FAN12G0824 Fragaria x ananassa HOM05D005225 ORTHO05D006830 9.0e-218 760.4 508 72.4
Hma1.2p1_0051F.1_g029440 Hydrangea macrophylla HOM05D005225 ORTHO05D006830 1.2e-217 760.0 508 72.2
Lalb_Chr04g0255551 Lupinus albus HOM05D005225 ORTHO05D006830 3.4e-217 758.4 507 71.4
COL.COLO4_27858 Corchorus olitorius HOM05D005225 ORTHO05D006830 4.5e-217 758.1 481 74.8
FAN12G2267 Fragaria x ananassa HOM05D005225 ORTHO05D006830 7.6e-217 757.3 508 72.2
Duzib251G0330 Durio zibethinus HOM05D005225 ORTHO05D006830 1.0e-216 756.9 508 70.9
Gorai.008G176100 Gossypium raimondii HOM05D005225 ORTHO05D006830 2.9e-216 755.4 507 71.4
Rhsim09G0126000 Rhododendron simsii HOM05D005225 ORTHO05D006830 3.2e-215 751.9 495 73.1
PSO017G1582 Papaver somniferum HOM05D005225 ORTHO05D006830 7.1e-215 750.7 509 71.3
TWI79G0826 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 7.1e-215 750.7 508 70.1
vmacro01311 Vaccinium macrocarpon HOM05D005225 ORTHO05D006830 1.2e-214 750.0 479 74.9
PGR102G0586 Punica granatum HOM05D005225 ORTHO05D006830 2.7e-214 748.8 508 71.7
MD16G1281400 Malus domestica HOM05D005225 ORTHO05D006830 4.6e-214 748.0 480 74.6
arahy.Tifrunner.gnm1.ann1.1IY8V2 Arachis hypogaea HOM05D005225 ORTHO05D006830 6.0e-214 747.7 493 71.4
Eucgr.F03034 Eucalyptus grandis HOM05D005225 ORTHO05D006830 6.0e-214 747.7 508 71.7
Hund25165 Selenicereus undatus HOM05D005225 ORTHO05D006830 6.0e-214 747.7 507 70.8
DCAR_004043 Daucus carota HOM05D005225 ORTHO05D006830 1.0e-213 746.9 465 77.2
TWI75G0045 Tripterygium wilfordii HOM05D005225 ORTHO05D006830 1.0e-213 746.9 508 70.5
arahy.Tifrunner.gnm1.ann1.BAL663 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.9e-213 745.0 493 71.2
arahy.Tifrunner.gnm1.ann1.BYWX90 Arachis hypogaea HOM05D005225 ORTHO05D006830 3.9e-213 745.0 492 71.1
arahy.Tifrunner.gnm1.ann1.W47LMS Arachis hypogaea HOM05D005225 ORTHO05D006830 3.9e-213 745.0 492 71.1
CANSAT80G1664 Cannabis sativa HOM05D005225 ORTHO05D006830 5.1e-213 744.6 506 70.2
HanXRQChr12g0375111 Helianthus annuus HOM05D005225 ORTHO05D006830 5.1e-213 744.6 506 71.1
Cpa.g.sc1.153 Carica papaya HOM05D005225 ORTHO05D006830 1.1e-212 743.4 476 75.6
VMungo1215G0332 Vigna mungo HOM05D005225 ORTHO05D006830 2.5e-212 742.3 507 70.4
Lj3P1029T28 Lonicera japonica HOM05D005225 ORTHO05D006830 1.3e-211 740.0 478 74.7
Medtr5g044980 Medicago truncatula HOM05D005225 ORTHO05D006830 1.4e-210 736.5 483 72.3
Nn8g41224 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.8e-210 736.1 478 74.3
CsaV3_5G008630 Cucumis sativus L. HOM05D005225 ORTHO05D006830 3.1e-210 735.3 509 69.9
Glyma.02G120400 Glycine max HOM05D005225 ORTHO05D006830 5.3e-210 734.6 486 72.8
Sed0018680 Sechium edule HOM05D005225 ORTHO05D006830 6.9e-210 734.2 482 72.4
Lj2g0003273 Lotus japonicus HOM05D005225 ORTHO05D006830 1.2e-209 733.4 483 71.4
TPR.G23155 Trifolium pratense HOM05D005225 ORTHO05D006830 2.0e-209 732.6 485 72.6
MBI16_g03095_MAGBIO Magnolia biondii HOM05D005225 ORTHO05D006830 3.4e-209 731.9 511 70.3
MSTRG.7736 Avicennia marina HOM05D005225 ORTHO05D006830 5.9e-209 731.1 508 69.5
ClCG11G000950 Citrullus lanatus HOM05D005225 ORTHO05D006830 1.0e-208 730.3 473 73.4
MELO3C020077.2 Cucumis melo HOM05D005225 ORTHO05D006830 1.0e-208 730.3 509 70.3
AUR62003082 Chenopodium quinoa HOM05D005225 ORTHO05D006830 2.9e-208 728.8 506 68.2
ECA246G3793 Erigeron canadensis HOM05D005225 ORTHO05D006830 2.9e-208 728.8 509 68.8
Psat2g131720 Pisum sativum HOM05D005225 ORTHO05D006830 3.8e-208 728.4 483 71.8
TPR.G23738 Trifolium pratense HOM05D005225 ORTHO05D006830 1.4e-207 726.5 483 72.0
Ca_05000_v3 Cicer arietinum L. HOM05D005225 ORTHO05D006830 3.2e-207 725.3 485 69.9
SalBow2G3373 Salvia bowleyana HOM05D005225 ORTHO05D006830 3.2e-207 725.3 507 68.2
Ah.03g138790 Amaranthus hybridus HOM05D005225 ORTHO05D006830 4.2e-207 724.9 507 69.2
Lsat_1_v5_gn_3_53701 Lactuca sativa HOM05D005225 ORTHO05D006830 4.2e-207 724.9 510 68.6
HanXRQChr03g0092011 Helianthus annuus HOM05D005225 ORTHO05D006830 2.1e-206 722.6 508 70.3
Migut.L01174 Erythranthe guttata HOM05D005225 ORTHO05D006830 1.8e-205 719.5 510 66.9
Sc04g0007480 Simmondsia chinensis HOM05D005225 ORTHO05D006830 1.8e-205 719.5 507 68.2
GSVIVG01012238001 Vitis vinifera HOM05D005225 ORTHO05D006830 3.9e-205 718.4 508 68.9
Lalb_Chr10g0098931 Lupinus albus HOM05D005225 ORTHO05D006830 1.4e-202 709.9 492 70.3
Gohir.A12G160100 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.7e-198 695.7 505 67.3
THA.LOC104821999 Tarenaya hassleriana HOM05D005225 ORTHO05D006830 2.7e-198 695.7 503 67.0
Oeu055095.2 Olea europaea HOM05D005225 ORTHO05D006830 5.1e-197 691.4 440 75.7
AT4G30000 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 6.7e-197 691.0 488 66.8
AL7G22240 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 8.8e-197 690.6 488 67.0
Aa31LG2G20560 Aethionema arabicum HOM05D005225 ORTHO05D006830 1.1e-196 690.3 478 67.4
CiPaw.06G093200 Carya illinoinensis HOM05D005225 ORTHO05D006830 1.1e-196 690.3 441 73.7
Gohir.D12G163500 Gossypium hirsutum HOM05D005225 ORTHO05D006830 2.6e-196 689.1 507 66.5
Carub.0007s1065 Capsella rubella HOM05D005225 ORTHO05D006830 7.4e-196 687.6 481 67.4
CARHR237920 Cardamine hirsuta HOM05D005225 ORTHO05D006830 7.4e-196 687.6 489 66.7
BraA01t00759Z Brassica rapa HOM05D005225 ORTHO05D006830 9.7e-196 687.2 482 67.0
A01p08120 Brassica napus HOM05D005225 ORTHO05D006830 2.2e-195 686.0 513 64.3
Aqoxy6G03037 Aquilegia oxysepala HOM05D005225 ORTHO05D006830 1.1e-194 683.7 441 73.5
EL10Ac6g15018 Beta vulgaris HOM05D005225 ORTHO05D006830 1.8e-194 682.9 482 69.1
Sp7g27800 Schrenkiella parvula HOM05D005225 ORTHO05D006830 3.1e-194 682.2 497 65.2
Thhalv10024845m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 2.6e-193 679.1 478 67.6
BcaC09g51778 Brassica carinata HOM05D005225 ORTHO05D006830 1.3e-192 676.8 473 67.2
C01p09090 Brassica napus HOM05D005225 ORTHO05D006830 1.3e-192 676.8 473 67.2
BolC1t00900H Brassica oleracea HOM05D005225 ORTHO05D006830 1.3e-192 676.8 473 67.2
unitig_22.g6894 Utricularia gibba HOM05D005225 ORTHO05D006830 6.1e-190 667.9 507 62.5
TAR629G1144 Trochodendron aralioides HOM05D005225 ORTHO05D006830 3.9e-189 665.2 509 66.6
SEGI_35565 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 5.2e-189 664.8 476 65.5
Thhalv10019460m.g Eutrema salsugineum HOM05D005225 ORTHO05D006830 3.3e-188 662.1 466 67.8
Os07g0618500 Oryza sativa ssp. japonica HOM05D005225 ORTHO05D006830 4.4e-188 661.8 489 63.4
Sp5g24250 Schrenkiella parvula HOM05D005225 ORTHO05D006830 1.3e-187 660.2 467 67.2
AT1G69190 Arabidopsis thaliana HOM05D005225 ORTHO05D006830 2.8e-187 659.1 468 67.3
ATR0827G107 Amborella trichopoda HOM05D005225 ORTHO05D006830 3.1e-186 655.6 474 67.7
HPP92_017786 Vanilla planifolia HOM05D005225 ORTHO05D006830 2.6e-185 652.5 496 64.9
Zm00001eb319990 Zea mays HOM05D005225 ORTHO05D006830 3.8e-184 648.7 473 63.6
CSS0031076 Camellia sinensis var. sinensis HOM05D005225 ORTHO05D006830 6.7e-181 637.9 474 67.1
FAN17G1346 Fragaria x ananassa HOM05D005225 ORTHO05D006830 1.2e-180 637.1 406 75.4
AL2G28280 Arabidopsis lyrata HOM05D005225 ORTHO05D006830 6.5e-176 621.3 453 64.7
SGA_v2.0_scaffold85G26791 Striga asiatica HOM05D005225 ORTHO05D006830 8.5e-176 620.9 469 64.8
SHI01330 Sapria himalayana HOM05D005225 ORTHO05D006830 1.5e-172 610.1 467 64.7
Aa31sc367G20 Aethionema arabicum HOM05D005225 ORTHO05D006830 4.1e-170 602.1 468 62.6
FAN07G1983 Fragaria x ananassa HOM05D005225 ORTHO05D006830 2.0e-169 599.7 385 74.5
Actinidia00572 Actinidia chinensis HOM05D005225 ORTHO05D006830 3.2e-167 592.4 478 64.4
MD06G1024100 Malus domestica HOM05D005225 ORTHO05D006830 6.6e-160 568.2 441 63.7
SEGI_04122 Sequoiadendron giganteum HOM05D005225 ORTHO05D006830 5.7e-156 555.1 476 56.9
AagrBONN_evm.TU.Sc2ySwM_362.716 Anthoceros agrestis HOM05D005225 ORTHO05D006830 7.5e-156 554.7 481 55.5
Pp3c27_4310 Physcomitrium patens HOM05D005225 ORTHO05D006830 9.8e-148 527.7 462 55.4
Mapoly0021s0079 Marchantia polymorpha HOM05D005225 ORTHO05D006830 1.4e-146 523.9 466 55.6
Nn2g15478 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.4e-138 496.5 328 72.3
Glyma.01G062200 Glycine max HOM05D005225 ORTHO05D006830 1.6e-137 493.8 345 69.3
AUR62007898 Chenopodium quinoa HOM05D005225 ORTHO05D006830 3.5e-137 492.7 339 69.3
RcHm_v2.0_Chr2g0139541 Rosa chinensis HOM05D005225 ORTHO05D006830 7.3e-135 485.0 318 74.5
SMO358G0268 Selaginella moellendorffii HOM05D005225 ORTHO05D006830 3.6e-134 482.6 462 51.1
Phvul.007G262101 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.0e-120 438.0 295 71.5
Phvul.001G131450 Phaseolus vulgaris HOM05D005225 ORTHO05D006830 1.7e-120 437.2 295 71.2
CDE04G0587 Ceratophyllum demersum HOM05D005225 ORTHO05D006830 3.1e-117 426.4 284 71.1
CBR_g61480 Chara braunii HOM05D005225 ORTHO05D006830 9.0e-117 424.9 466 47.9
SGA_v2.0_scaffold45G17115 Striga asiatica HOM05D001733 ORTHO05D001882 1.1e-111 407.9 380 55.5
HanXRQChr04g0120931 Helianthus annuus HOM05D005225 ORTHO05D006830 1.1e-103 381.3 250 72.0
MCO11G893 Micromonas commoda HOM05D005225 ORTHO05D006830 3.0e-96 356.7 539 41.7
Cre10.g428550 Chlamydomonas reinhardtii HOM05D005225 ORTHO05D006830 9.7e-95 351.7 604 37.6
PRCOL_00003253 Prasinoderma coloniale HOM05D005225 ORTHO05D006830 1.1e-82 311.6 464 41.2
Cfa024768 Carpinus fangiana HOM05D005225 ORTHO05D124687 3.4e-76 290.0 458 39.3
Nn4g23480 Nelumbo nucifera HOM05D005225 ORTHO05D006830 2.2e-70 270.8 155 80.6
LjContig00272g0016968 Lotus japonicus HOM05D005225 ORTHO05D006830 4.0e-56 223.4 213 53.5
SGA_v2.0_scaffold16G07808 Striga asiatica HOM05D005225 ORTHO05D006830 6.8e-48 196.1 240 47.1
RcHm_v2.0_Chr2g0139531 Rosa chinensis HOM05D005225 ORTHO05D006830 8.3e-46 189.1 175 56.6
Actinidia16153 Actinidia chinensis HOM05D005225 ORTHO05D006830 8.3e-38 162.5 309 36.6
Nn4g23481 Nelumbo nucifera HOM05D005225 ORTHO05D006830 1.9e-37 161.4 108 76.9
SGA_v2.0_scaffold16G07809 Striga asiatica HOM05D005225 ORTHO05D048239 1.2e-33 148.7 118 60.2
HanXRQChr15g0477151 Helianthus annuus HOM05D005225 ORTHO05D044060 4.9e-30 136.7 96 70.8
TAR371G0727 Trochodendron aralioides HOM05D005225 ORTHO05D006830 8.3e-30 136.0 232 38.8
HanXRQChr04g0120941 Helianthus annuus HOM05D005225 ORTHO05D048239 2.4e-29 134.4 87 72.4
AUR62007899 Chenopodium quinoa HOM05D005225 ORTHO05D044060 6.4e-22 109.8 76 65.8
QL06p011620 Quercus lobata HOM05D005225 ORTHO05D006830 1.6e-20 105.1 68 76.5
CARHR062340 Cardamine hirsuta HOM05D005225 ORTHO05D006830 3.0e-19 100.9 68 66.2
Medtr0076s0050 Medicago truncatula HOM05D005225 ORTHO05D265034 3.9e-19 100.5 90 57.8
Thecc.02G327500 Theobroma cacao HOM05D005225 ORTHO05D407879 2.2e-06 58.2 36 72.2


User provided reference genes

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