Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028333 Solanum tuberosum HOM05D004550 ORTHO05D005340 1.7e-126 456.1 235 100.0
Solyc05g012710.4 Solanum lycopersicum HOM05D004550 ORTHO05D005340 3.2e-125 451.8 235 98.3
Sopen05g007540 Solanum pennellii HOM05D004550 ORTHO05D005340 2.0e-124 449.1 235 97.4
CAN.G1200.3 Capsicum annuum HOM05D004550 ORTHO05D005340 2.0e-119 432.6 233 93.1
Nitab4.5_0000334g0090 Nicotiana tabacum HOM05D004550 ORTHO05D005340 3.4e-111 405.2 236 86.9
Nitab4.5_0011843g0010 Nicotiana tabacum HOM05D004550 ORTHO05D005340 2.9e-110 402.1 236 86.4
Peaxi162Scf00364g00223 Petunia axillaris HOM05D004550 ORTHO05D005340 1.2e-108 396.7 235 83.8
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 9.3e-93 344.0 232 74.1
Hma1.2p1_0354F.1_g133690 Hydrangea macrophylla HOM05D004550 ORTHO05D005340 1.6e-89 333.2 231 74.0
CSS0021997 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 8.1e-89 330.9 228 72.4
CSS0045485 Camellia sinensis var. sinensis HOM05D004550 ORTHO05D005340 1.1e-88 330.5 228 72.4
Migut.L01230 Erythranthe guttata HOM05D004550 ORTHO05D005340 1.8e-88 329.7 229 74.7
Cc11_g12470 Coffea canephora HOM05D004550 ORTHO05D005340 1.5e-87 326.6 236 69.5
MSTRG.7770 Avicennia marina HOM05D004550 ORTHO05D005340 5.5e-85 318.2 237 69.6
Rhsim12G0077600 Rhododendron simsii HOM05D004550 ORTHO05D005340 8.7e-83 310.8 226 69.0
Cfa008917 Carpinus fangiana HOM05D004550 ORTHO05D005340 3.3e-82 308.9 227 70.9
CiPaw.06G089400 Carya illinoinensis HOM05D004550 ORTHO05D005340 2.4e-80 302.8 226 69.5
QL03p070023 Quercus lobata HOM05D004550 ORTHO05D005340 6.9e-80 301.2 227 68.7
Actinidia31956 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.6e-79 299.3 236 66.5
Duzib268G1083 Durio zibethinus HOM05D004550 ORTHO05D005340 2.6e-79 299.3 227 65.6
TAR629G0577 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.4e-79 298.9 227 65.2
Gohir.D12G165500 Gossypium hirsutum HOM05D004550 ORTHO05D005340 1.0e-78 297.4 227 65.2
Gorai.008G178200 Gossypium raimondii HOM05D004550 ORTHO05D005340 1.0e-78 297.4 227 65.2
GSVIVG01001334001 Vitis vinifera HOM05D004550 ORTHO05D005340 1.4e-77 293.5 225 67.6
Atru.chr11.1702 Acer truncatum HOM05D004550 ORTHO05D005340 2.5e-77 292.7 227 66.1
CiPaw.05G128700 Carya illinoinensis HOM05D004550 ORTHO05D005340 4.2e-77 292.0 226 66.4
RcHm_v2.0_Chr4g0438981 Rosa chinensis HOM05D004550 ORTHO05D005340 2.1e-76 289.7 227 65.6
Gohir.A12G162200 Gossypium hirsutum HOM05D004550 ORTHO05D005340 2.7e-76 289.3 227 63.9
Nn4g23307 Nelumbo nucifera HOM05D004550 ORTHO05D005340 6.0e-76 288.1 229 65.1
DCAR_030983 Daucus carota HOM05D004550 ORTHO05D005340 1.3e-75 287.0 231 64.9
Lsat_1_v5_gn_8_46800 Lactuca sativa HOM05D004550 ORTHO05D005340 1.8e-75 286.6 227 65.2
Thecc.02G338200 Theobroma cacao HOM05D004550 ORTHO05D005340 3.0e-75 285.8 228 64.0
TWI31G0520 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 3.0e-75 285.8 227 64.8
Prupe.1G281100 Prunus persica HOM05D004550 ORTHO05D005340 5.1e-75 285.0 226 65.0
Aqoxy3G03523 Aquilegia oxysepala HOM05D004550 ORTHO05D005340 8.7e-75 284.3 231 64.1
Nn3g17356 Nelumbo nucifera HOM05D004550 ORTHO05D005340 8.7e-75 284.3 227 63.0
FAN17G0531 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.5e-74 283.5 227 63.9
FAN07G0354 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.9e-74 283.1 227 64.3
FvH4_4g30590 Fragaria vesca HOM05D004550 ORTHO05D005340 4.3e-74 282.0 227 63.9
HanXRQChr08g0210541 Helianthus annuus HOM05D004550 ORTHO05D005340 4.3e-74 282.0 227 65.6
HanXRQChr08g0211031 Helianthus annuus HOM05D004550 ORTHO05D005340 4.3e-74 282.0 227 65.6
HanXRQChr12g0362721 Helianthus annuus HOM05D004550 ORTHO05D005340 9.6e-74 280.8 228 63.2
vmacro01339 Vaccinium macrocarpon HOM05D004550 ORTHO05D005340 9.6e-74 280.8 309 50.8
Duzib251G0963 Durio zibethinus HOM05D004550 ORTHO05D005340 1.3e-73 280.4 228 64.0
ECA233G5814 Erigeron canadensis HOM05D004550 ORTHO05D005340 2.1e-73 279.6 218 66.5
SGA_v2.0_scaffold36G14423 Striga asiatica HOM05D004550 ORTHO05D005340 2.1e-73 279.6 241 63.1
Eucgr.B03186 Eucalyptus grandis HOM05D004550 ORTHO05D005340 2.8e-73 279.3 230 64.3
Manes.05G107100 Manihot esculenta HOM05D004550 ORTHO05D005340 8.2e-73 277.7 229 64.2
SGA_v2.0_scaffold16G07747 Striga asiatica HOM05D004550 ORTHO05D005340 1.1e-72 277.3 245 62.9
Phvul.002G090800 Phaseolus vulgaris HOM05D004550 ORTHO05D005340 1.8e-72 276.6 232 66.4
CsaV3_5G025150 Cucumis sativus L. HOM05D004550 ORTHO05D005340 2.4e-72 276.2 226 64.2
Potri.010G162600 Populus trichocarpa HOM05D004550 ORTHO05D005340 2.4e-72 276.2 229 62.9
VMungo1215G2831 Vigna mungo HOM05D004550 ORTHO05D005340 3.1e-72 275.8 232 66.4
MBI19_g03106_MAGBIO Magnolia biondii HOM05D004550 ORTHO05D005340 4.1e-72 275.4 229 63.3
Ciclev10032704m.g Citrus clementina HOM05D004550 ORTHO05D005340 5.3e-72 275.0 227 64.8
Medtr5g043020 Medicago truncatula HOM05D004550 ORTHO05D005340 6.9e-72 274.6 229 64.2
ClCG09G021950 Citrullus lanatus HOM05D004550 ORTHO05D005340 9.0e-72 274.2 226 63.7
TWI79G1514 Tripterygium wilfordii HOM05D004550 ORTHO05D005340 2.0e-71 273.1 227 64.3
Ca_27938_v3 Cicer arietinum L. HOM05D004550 ORTHO05D005340 3.4e-71 272.3 228 64.5
FAN22G1576 Fragaria x ananassa HOM05D004550 ORTHO05D005340 4.5e-71 271.9 225 62.7
Actinidia19927 Actinidia chinensis HOM05D004550 ORTHO05D005340 1.7e-70 270.0 210 66.7
unitig_21.g20859 Utricularia gibba HOM05D004550 ORTHO05D005340 2.2e-70 269.6 230 63.0
Glyma.02G112600 Glycine max HOM05D004550 ORTHO05D005340 2.9e-70 269.2 230 65.7
Oeu021093.1 Olea europaea HOM05D004550 ORTHO05D005340 2.9e-70 269.2 187 72.2
GSVIVG01011473001 Vitis vinifera HOM05D004550 ORTHO05D005340 8.4e-70 267.7 231 59.7
Lalb_Chr17g0340931 Lupinus albus HOM05D004550 ORTHO05D005340 1.1e-69 267.3 232 64.7
Potri.008G092300 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.1e-69 267.3 229 62.0
Glyma.01G054200 Glycine max HOM05D004550 ORTHO05D005340 1.9e-69 266.5 231 64.9
CANSAT64G2188 Cannabis sativa HOM05D004550 ORTHO05D005340 9.3e-69 264.2 237 58.6
COL.COLO4_27949 Corchorus olitorius HOM05D004550 ORTHO05D005340 9.3e-69 264.2 199 65.8
FAN12G3802 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.2e-68 263.8 218 63.3
Sed0017620 Sechium edule HOM05D004550 ORTHO05D005340 2.1e-68 263.1 226 61.9
DCAR_007179 Daucus carota HOM05D004550 ORTHO05D005340 6.1e-68 261.5 228 59.6
PGR102G3210 Punica granatum HOM05D004550 ORTHO05D005340 7.9e-68 261.2 230 59.6
Sc04g0007790 Simmondsia chinensis HOM05D004550 ORTHO05D005340 7.9e-68 261.2 228 62.3
Ah.02g129300 Amaranthus hybridus HOM05D004550 ORTHO05D005340 2.3e-67 259.6 249 58.6
Lj2g0016497 Lotus japonicus HOM05D004550 ORTHO05D005340 2.3e-67 259.6 231 62.3
PSO063G6186 Papaver somniferum HOM05D004550 ORTHO05D005340 2.3e-67 259.6 227 59.5
MELO3C002974.2 Cucumis melo HOM05D004550 ORTHO05D005340 5.1e-67 258.5 256 56.2
PSO063G5570 Papaver somniferum HOM05D004550 ORTHO05D005340 6.7e-67 258.1 227 59.0
TPR.G30749 Trifolium pratense HOM05D004550 ORTHO05D005340 8.7e-67 257.7 224 62.1
Sabra08G0069100 Salix brachista HOM05D004550 ORTHO05D005340 1.5e-66 256.9 278 52.2
arahy.Tifrunner.gnm1.ann1.M1L69X Arachis hypogaea HOM05D004550 ORTHO05D005340 1.9e-66 256.5 235 62.1
Psat2g127440 Pisum sativum HOM05D004550 ORTHO05D005340 5.7e-66 255.0 229 59.0
Ah.03g134600 Amaranthus hybridus HOM05D004550 ORTHO05D005340 1.3e-65 253.8 233 60.1
EL10Ac6g13282 Beta vulgaris HOM05D004550 ORTHO05D005340 2.8e-65 252.7 261 54.0
CARHR062270 Cardamine hirsuta HOM05D004550 ORTHO05D005340 2.8e-65 252.7 224 61.6
Thhalv10019103m.g Eutrema salsugineum HOM05D004550 ORTHO05D005340 4.8e-65 251.9 227 60.4
TAR371G1135 Trochodendron aralioides HOM05D004550 ORTHO05D005340 3.1e-64 249.2 204 61.8
Aa31LG4G11470 Aethionema arabicum HOM05D004550 ORTHO05D005340 6.9e-64 248.1 219 63.5
Sp5g24440 Schrenkiella parvula HOM05D004550 ORTHO05D005340 6.9e-64 248.1 227 61.2
Haze_11945 Corylus avellana HOM05D004550 ORTHO05D005340 2.6e-63 246.1 181 70.2
Cpa.g.sc1.80 Carica papaya HOM05D004550 ORTHO05D005340 5.9e-63 245.0 197 62.9
Lalb_Chr04g0255821 Lupinus albus HOM05D004550 ORTHO05D005340 7.7e-63 244.6 232 61.2
TAR374G1091 Trochodendron aralioides HOM05D004550 ORTHO05D005340 1.0e-62 244.2 178 67.4
Sabra10G0123800 Salix brachista HOM05D001252 ORTHO05D005340 6.5e-62 241.5 200 61.0
BolC2t08705H Brassica oleracea HOM05D004550 ORTHO05D005340 1.1e-61 240.7 228 61.0
C06p40530 Brassica napus HOM05D004550 ORTHO05D005340 5.5e-61 238.4 229 60.3
BolC6t39378H Brassica oleracea HOM05D004550 ORTHO05D005340 5.5e-61 238.4 231 59.7
C02p26330 Brassica napus HOM05D004550 ORTHO05D005340 9.4e-61 237.7 228 60.5
A07p35690 Brassica napus HOM05D004550 ORTHO05D005340 1.2e-60 237.3 236 58.5
BraA07t31157Z Brassica rapa HOM05D004550 ORTHO05D005340 1.2e-60 237.3 236 58.5
AL2G28500 Arabidopsis lyrata HOM05D004550 ORTHO05D005340 2.1e-60 236.5 227 59.5
RcHm_v2.0_Chr2g0166971 Rosa chinensis HOM05D004550 ORTHO05D005340 2.1e-60 236.5 233 55.8
THA.LOC104822027 Tarenaya hassleriana HOM05D004550 ORTHO05D005340 2.1e-60 236.5 229 59.8
arahy.Tifrunner.gnm1.ann1.F9ESEJ Arachis hypogaea HOM05D004550 ORTHO05D005340 3.6e-60 235.7 203 63.1
BcaB05g24446 Brassica carinata HOM05D004550 ORTHO05D005340 1.0e-59 234.2 229 59.8
AT1G69390 Arabidopsis thaliana HOM05D004550 ORTHO05D005340 1.4e-59 233.8 227 58.6
Carub.0002s1599 Capsella rubella HOM05D004550 ORTHO05D005340 1.4e-59 233.8 226 58.8
FvH4_6g47773 Fragaria vesca HOM05D004550 ORTHO05D005340 6.7e-59 231.5 230 56.1
HanXRQChr17g0545411 Helianthus annuus HOM05D004550 ORTHO05D005340 6.7e-59 231.5 228 58.8
Gohir.D02G127801 Gossypium hirsutum HOM05D004550 ORTHO05D005340 7.4e-58 228.0 227 54.2
Gorai.005G143600 Gossypium raimondii HOM05D004550 ORTHO05D005340 7.4e-58 228.0 227 54.2
Hund05856 Selenicereus undatus HOM05D004550 ORTHO05D005340 9.7e-58 227.6 231 54.1
BcaB03g15897 Brassica carinata HOM05D004550 ORTHO05D005340 3.7e-57 225.7 228 57.5
PSO478G0019 Papaver somniferum HOM05D004550 ORTHO05D005340 6.3e-57 224.9 229 55.0
MSTRG.729 Avicennia marina HOM05D004550 ORTHO05D005340 1.1e-56 224.2 142 80.3
Manes.05G087100 Manihot esculenta HOM05D004550 ORTHO05D005340 1.1e-56 224.2 166 68.1
FAN05G1708 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.8e-56 223.4 224 56.2
Prupe.3G261900 Prunus persica HOM05D004550 ORTHO05D005340 1.3e-54 217.2 218 56.4
CDE04G2021 Ceratophyllum demersum HOM05D004550 ORTHO05D005340 5.0e-54 215.3 248 51.6
A02p15870 Brassica napus HOM05D004550 ORTHO05D005340 6.5e-54 214.9 156 71.2
AUR62032858 Chenopodium quinoa HOM05D004550 ORTHO05D005340 2.5e-53 213.0 231 51.9
AUR62005866 Chenopodium quinoa HOM05D004550 ORTHO05D005340 3.2e-53 212.6 231 51.9
ATR0730G201 Amborella trichopoda HOM05D004550 ORTHO05D005340 9.4e-53 211.1 181 64.1
FAN14G0263 Fragaria x ananassa HOM05D004550 ORTHO05D005340 1.4e-51 207.2 177 62.1
MD09G1057200 Malus domestica HOM05D004550 ORTHO05D005340 3.3e-50 202.6 213 54.9
HPP92_018458 Vanilla planifolia HOM05D004550 ORTHO05D005340 4.4e-50 202.2 234 50.9
BcaC03g15080 Brassica carinata HOM05D004550 ORTHO05D005340 3.7e-49 199.1 153 69.9
MELO3C012132.2 Cucumis melo HOM05D004550 ORTHO05D005340 6.3e-49 198.4 227 49.8
Os12g0498400 Oryza sativa ssp. japonica HOM05D004550 ORTHO05D005340 1.8e-48 196.8 225 50.2
Sed0010995 Sechium edule HOM05D004550 ORTHO05D005340 5.9e-47 191.8 228 50.0
CsaV3_5G033110 Cucumis sativus L. HOM05D004550 ORTHO05D005340 7.7e-47 191.4 227 48.5
Potri.004G121000 Populus trichocarpa HOM05D004550 ORTHO05D005340 6.1e-44 181.8 183 57.4
Sabra04G0067200 Salix brachista HOM05D004550 ORTHO05D005340 1.0e-43 181.0 210 52.9
ClCG05G023910 Citrullus lanatus HOM05D004550 ORTHO05D005340 3.7e-41 172.6 207 48.3
Actinidia33237 Actinidia chinensis HOM05D004550 ORTHO05D005340 2.4e-40 169.9 150 60.0
MD16G1066100 Malus domestica HOM05D004550 ORTHO05D005340 1.7e-38 163.7 99 82.8
Zm00001eb409620 Zea mays HOM05D004550 ORTHO05D005340 2.9e-38 162.9 128 64.8
SEGI_17925 Sequoiadendron giganteum HOM05D004550 ORTHO05D005340 1.1e-37 161.0 171 53.2
Thecc.02G337600 Theobroma cacao HOM05D004550 ORTHO05D005340 8.8e-35 151.4 110 69.1
Mapoly0021s0017 Marchantia polymorpha HOM05D004550 ORTHO05D005340 3.1e-32 142.9 180 51.1
SMO141G0150 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.2e-31 141.0 100 67.0
Pp3c23_20800 Physcomitrium patens HOM05D004550 ORTHO05D005340 3.5e-31 139.4 131 57.3
SMO356G0701 Selaginella moellendorffii HOM05D004550 ORTHO05D005340 1.0e-30 137.9 186 47.8
Pp3c20_5010 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.7e-30 137.1 130 56.9
AagrBONN_evm.TU.Sc2ySwM_344.2821 Anthoceros agrestis HOM05D004550 ORTHO05D005340 5.5e-29 132.1 101 64.4
Pp3c9_20530 Physcomitrium patens HOM05D004550 ORTHO05D005340 1.5e-26 124.0 132 51.5
arahy.Tifrunner.gnm1.ann1.QAIU0T Arachis hypogaea HOM05D004550 ORTHO05D005340 3.5e-23 112.8 80 71.2
BcaC08g45895 Brassica carinata HOM05D004550 ORTHO05D005340 8.0e-20 101.7 68 77.9
C06p37000 Brassica napus HOM05D004550 ORTHO05D005340 9.8e-18 94.7 95 60.0
BolC6t38810H Brassica oleracea HOM05D004550 ORTHO05D005340 9.8e-18 94.7 95 60.0
Potri.017G088401 Populus trichocarpa HOM05D004550 ORTHO05D005340 1.7e-14 84.0 62 67.7
BcaB03g15467 Brassica carinata HOM05D004550 ORTHO05D005340 3.0e-14 83.2 64 67.2
MCO05G609 Micromonas commoda HOM05D004550 ORTHO05D005340 8.6e-14 81.6 109 41.3
PRCOL_00005365 Prasinoderma coloniale HOM05D004550 ORTHO05D005340 1.1e-13 81.3 134 35.1
Cre17.g720350 Chlamydomonas reinhardtii HOM05D004550 ORTHO05D005340 1.9e-13 80.5 94 40.4
RcHm_v2.0_Chr5g0013451 Rosa chinensis HOM05D004550 ORTHO05D005340 7.8e-07 58.5 71 40.8


User provided reference genes

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