Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028321 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.2e-76 288.9 149 100.0
Sopen05g007220 Solanum pennellii HOM05D006060 ORTHO05D007268 2.8e-71 271.9 150 95.3
Solyc05g012400.4 Solanum lycopersicum HOM05D006060 ORTHO05D007268 4.1e-70 268.1 151 93.4
CAN.G616.32 Capsicum annuum HOM05D006060 ORTHO05D007268 5.7e-56 221.1 145 80.7
PGSC0003DMG400042856 Solanum tuberosum HOM05D006060 ORTHO05D007268 2.7e-45 185.7 149 67.1
TAR622G0987 Trochodendron aralioides HOM05D006060 ORTHO05D007268 8.6e-44 180.6 123 74.0
MD16G1062000 Malus domestica HOM05D006060 ORTHO05D007268 1.5e-43 179.9 122 72.1
Ciclev10033030m.g Citrus clementina HOM05D006060 ORTHO05D007268 1.9e-43 179.5 113 79.6
MSTRG.7750 Avicennia marina HOM05D006060 ORTHO05D007268 2.5e-43 179.1 146 65.8
HanXRQChr15g0477061 Helianthus annuus HOM05D006060 ORTHO05D007268 2.5e-43 179.1 122 71.3
MD13G1063500 Malus domestica HOM05D006060 ORTHO05D007268 2.5e-43 179.1 123 71.5
Potri.010G159200 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.5e-43 179.1 117 77.8
HanXRQChr12g0375301 Helianthus annuus HOM05D006060 ORTHO05D007268 9.5e-43 177.2 122 71.3
Dinv34077 Davidia involucrata HOM05D006060 ORTHO05D007268 2.1e-42 176.0 120 76.7
Manes.01G028500 Manihot esculenta HOM05D006060 ORTHO05D007268 2.1e-42 176.0 127 74.0
Potri.008G095100 Populus trichocarpa HOM05D006060 ORTHO05D007268 2.1e-42 176.0 117 76.1
Prupe.1G285900 Prunus persica HOM05D006060 ORTHO05D007268 2.8e-42 175.6 121 74.4
CiPaw.06G092000 Carya illinoinensis HOM05D006060 ORTHO05D007268 3.6e-42 175.3 119 73.9
FvH4_4g30180 Fragaria vesca HOM05D006060 ORTHO05D007268 3.6e-42 175.3 117 76.1
Lsat_1_v5_gn_3_55960 Lactuca sativa HOM05D006060 ORTHO05D007268 3.6e-42 175.3 120 71.7
Sc11g0002390 Simmondsia chinensis HOM05D006060 ORTHO05D007268 3.6e-42 175.3 121 72.7
ECA246G0948 Erigeron canadensis HOM05D006060 ORTHO05D007268 4.7e-42 174.9 114 73.7
Gohir.A13G081800 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.7e-42 174.9 125 72.0
Gohir.D13G081600 Gossypium hirsutum HOM05D006060 ORTHO05D007268 4.7e-42 174.9 125 72.0
Gorai.013G093500 Gossypium raimondii HOM05D006060 ORTHO05D007268 4.7e-42 174.9 125 72.0
CSS0014880 Camellia sinensis var. sinensis HOM05D006060 ORTHO05D007268 6.2e-42 174.5 114 76.3
Duzib248G0204 Durio zibethinus HOM05D006060 ORTHO05D007268 8.1e-42 174.1 127 71.7
THA.LOC104822014 Tarenaya hassleriana HOM05D006060 ORTHO05D007268 8.1e-42 174.1 114 76.3
PGR102G1832 Punica granatum HOM05D006060 ORTHO05D007268 1.4e-41 173.3 126 72.2
Eucgr.G02454 Eucalyptus grandis HOM05D006060 ORTHO05D007268 1.8e-41 172.9 116 74.1
Thecc.02G332700 Theobroma cacao HOM05D006060 ORTHO05D007268 2.3e-41 172.6 126 71.4
Sp1g22270 Schrenkiella parvula HOM05D006060 ORTHO05D007268 4.0e-41 171.8 126 70.6
Atru.chr11.1651 Acer truncatum HOM05D006060 ORTHO05D007268 8.9e-41 170.6 129 71.3
unitig_747.g21188 Utricularia gibba HOM05D006060 ORTHO05D007268 8.9e-41 170.6 147 63.3
Thhalv10009087m.g Eutrema salsugineum HOM05D006060 ORTHO05D007268 1.5e-40 169.9 114 73.7
Glyma.05G201000 Glycine max HOM05D006060 ORTHO05D007268 1.5e-40 169.9 120 70.0
Peaxi162Scf00175g00019 Petunia axillaris HOM05D006060 ORTHO05D007268 1.5e-40 169.9 88 92.0
RcHm_v2.0_Chr4g0438511 Rosa chinensis HOM05D006060 ORTHO05D007268 1.5e-40 169.9 115 75.7
Sopen05g007230 Solanum pennellii HOM05D006060 ORTHO05D007268 1.5e-40 169.9 147 63.9
Oeu048147.1 Olea europaea HOM05D006060 ORTHO05D007268 2.6e-40 169.1 148 58.1
CARHR025490 Cardamine hirsuta HOM05D006060 ORTHO05D007268 3.4e-40 168.7 123 70.7
Lj2g0026655 Lotus japonicus HOM05D006060 ORTHO05D007268 3.4e-40 168.7 120 69.2
Solyc05g012410.2 Solanum lycopersicum HOM05D006060 ORTHO05D007268 3.4e-40 168.7 147 63.9
BcaB03g14067 Brassica carinata HOM05D006060 ORTHO05D007268 4.4e-40 168.3 127 69.3
Carub.0001s2455 Capsella rubella HOM05D006060 ORTHO05D007268 5.8e-40 167.9 122 69.7
SalBow2G0810 Salvia bowleyana HOM05D006060 ORTHO05D007268 5.8e-40 167.9 147 60.5
Ca_24569_v3 Cicer arietinum L. HOM05D006060 ORTHO05D007268 7.5e-40 167.5 118 70.3
MBI16_g10268_MAGBIO Magnolia biondii HOM05D006060 ORTHO05D007268 9.9e-40 167.2 123 69.1
MELO3C012147.2 Cucumis melo HOM05D006060 ORTHO05D007268 1.3e-39 166.8 119 70.6
FAN22G0197 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.3e-39 166.8 124 71.0
Psat2g129720 Pisum sativum HOM05D006060 ORTHO05D007268 1.3e-39 166.8 118 68.6
Phvul.002G282400 Phaseolus vulgaris HOM05D006060 ORTHO05D007268 1.7e-39 166.4 120 67.5
Nn4g23399 Nelumbo nucifera HOM05D006060 ORTHO05D007268 2.9e-39 165.6 121 71.9
VMungo0251G0770 Vigna mungo HOM05D006060 ORTHO05D007268 2.9e-39 165.6 120 67.5
AL1G39270 Arabidopsis lyrata HOM05D006060 ORTHO05D007268 3.7e-39 165.2 114 71.1
Dinv16724 Davidia involucrata HOM05D006060 ORTHO05D007268 3.7e-39 165.2 111 74.8
TPR.G24456 Trifolium pratense HOM05D006060 ORTHO05D007268 3.7e-39 165.2 116 67.2
AT1G26470 Arabidopsis thaliana HOM05D006060 ORTHO05D007268 4.9e-39 164.9 114 71.1
CsaV3_5G033260 Cucumis sativus L. HOM05D006060 ORTHO05D007268 4.9e-39 164.9 119 69.7
Sed0026741 Sechium edule HOM05D006060 ORTHO05D007268 6.4e-39 164.5 119 68.9
CANSAT64G1324 Cannabis sativa HOM05D006060 ORTHO05D007268 1.4e-38 163.3 123 69.9
Medtr5g044200 Medicago truncatula HOM05D006060 ORTHO05D007268 1.9e-38 162.9 118 66.1
Nitab4.5_0000231g0430 Nicotiana tabacum HOM05D006060 ORTHO05D007268 4.1e-38 161.8 86 89.5
PSO017G1874 Papaver somniferum HOM05D006060 ORTHO05D007268 5.4e-38 161.4 119 68.9
Duzib251G0249 Durio zibethinus HOM05D006060 ORTHO05D007268 7.1e-38 161.0 116 69.0
Migut.L01198 Erythranthe guttata HOM05D006060 ORTHO05D007268 7.1e-38 161.0 151 60.9
SGA_v2.0_scaffold36G14451 Striga asiatica HOM05D006060 ORTHO05D007268 7.1e-38 161.0 147 58.5
PSO478G3582 Papaver somniferum HOM05D006060 ORTHO05D007268 1.2e-37 160.2 119 68.9
QL03p072164 Quercus lobata HOM05D006060 ORTHO05D007268 1.6e-37 159.8 152 59.9
QL03p072544 Quercus lobata HOM05D006060 ORTHO05D007268 1.6e-37 159.8 152 59.9
Glyma.08G008300 Glycine max HOM05D006060 ORTHO05D007268 2.1e-37 159.5 116 68.1
ClCG00G002570 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.7e-37 159.1 132 64.4
ClCG05G023750 Citrullus lanatus HOM05D006060 ORTHO05D007268 2.7e-37 159.1 132 64.4
C05p24530 Brassica napus HOM05D006060 ORTHO05D007268 4.6e-37 158.3 111 70.3
Aa31LG7G8620 Aethionema arabicum HOM05D006060 ORTHO05D007268 6.0e-37 157.9 127 65.4
arahy.Tifrunner.gnm1.ann1.GS86GR Arachis hypogaea HOM05D006060 ORTHO05D007268 6.0e-37 157.9 119 66.4
EL10Ac6g14984 Beta vulgaris HOM05D006060 ORTHO05D007268 6.0e-37 157.9 130 64.6
BcaC06g35142 Brassica carinata HOM05D006060 ORTHO05D007268 7.8e-37 157.5 111 71.2
A09p39890 Brassica napus HOM05D006060 ORTHO05D007268 1.0e-36 157.1 133 64.7
C07p19380 Brassica napus HOM05D006060 ORTHO05D007268 1.0e-36 157.1 141 62.4
GSVIVG01012208001 Vitis vinifera HOM05D006060 ORTHO05D007268 1.7e-36 156.4 115 68.7
ATR0064G055 Amborella trichopoda HOM05D006060 ORTHO05D007268 3.0e-36 155.6 115 67.0
BolC7t42457H Brassica oleracea HOM05D006060 ORTHO05D007268 3.0e-36 155.6 118 68.6
MD02G1257200 Malus domestica HOM05D006060 ORTHO05D007268 3.9e-36 155.2 121 63.6
A07p12940 Brassica napus HOM05D006060 ORTHO05D007268 5.1e-36 154.8 137 62.8
Hund05841 Selenicereus undatus HOM05D006060 ORTHO05D007268 6.6e-36 154.5 120 68.3
SEGI_32210 Sequoiadendron giganteum HOM05D006060 ORTHO05D007268 8.6e-36 154.1 125 64.0
Lalb_Chr04g0255711 Lupinus albus HOM05D006060 ORTHO05D007268 1.9e-35 152.9 118 61.0
TWI31G0802 Tripterygium wilfordii HOM05D006060 ORTHO05D007268 7.3e-35 151.0 124 65.3
HPP92_014051 Vanilla planifolia HOM05D006060 ORTHO05D007268 9.5e-35 150.6 123 61.8
Aqoxy3G00506 Aquilegia oxysepala HOM05D006060 ORTHO05D007268 2.8e-34 149.1 145 58.6
Medtr6g053980 Medicago truncatula HOM05D006060 ORTHO05D007268 3.6e-34 148.7 117 61.5
Os05g0512500 Oryza sativa ssp. japonica HOM05D006060 ORTHO05D007268 3.6e-34 148.7 121 62.0
SGA_v2.0_scaffold16G07773 Striga asiatica HOM05D006060 ORTHO05D007268 8.1e-34 147.5 123 57.7
BolC5t31187H Brassica oleracea HOM05D006060 ORTHO05D007268 5.2e-33 144.8 152 55.9
Nitab4.5_0004171g0060 Nicotiana tabacum HOM05D006060 ORTHO05D007268 1.5e-32 143.3 82 85.4
PGSC0003DMG400041308 Solanum tuberosum HOM05D006060 ORTHO05D007268 1.5e-32 143.3 125 65.6
AUR62003112 Chenopodium quinoa HOM05D006060 ORTHO05D007268 7.6e-32 141.0 175 48.6
Hund25185 Selenicereus undatus HOM05D006060 ORTHO05D007268 7.6e-32 141.0 154 51.9
Zm00001eb292660 Zea mays HOM05D006060 ORTHO05D007268 2.2e-31 139.4 99 64.6
FAN07G0043 Fragaria x ananassa HOM05D006060 ORTHO05D007268 1.1e-30 137.1 117 64.1
CDE02G4092 Ceratophyllum demersum HOM05D006060 ORTHO05D007268 3.2e-30 135.6 118 61.9
Sabra10G0120900 Salix brachista HOM05D006060 ORTHO05D007268 3.2e-30 135.6 119 64.7
FAN12G2760 Fragaria x ananassa HOM05D006060 ORTHO05D007268 9.2e-30 134.0 117 63.2
Sabra08G0071500 Salix brachista HOM05D006060 ORTHO05D007268 1.2e-29 133.7 159 49.7
Actinidia32300 Actinidia chinensis HOM05D004724 ORTHO05D007268 2.7e-29 132.5 83 72.3
Ah.03g138960 Amaranthus hybridus HOM05D006060 ORTHO05D007268 2.3e-28 129.4 117 61.5
FAN17G1885 Fragaria x ananassa HOM05D006060 ORTHO05D007268 2.5e-27 125.9 109 64.2
Actinidia28644 Actinidia chinensis HOM05D006060 ORTHO05D007268 5.6e-27 124.8 116 59.5
AagrBONN_evm.TU.Sc2ySwM_228.4858 Anthoceros agrestis HOM05D006821 ORTHO05D007268 5.6e-27 124.8 122 54.1
A03p24590 Brassica napus HOM05D006060 ORTHO05D007268 9.6e-27 124.0 111 61.3
BraA09t39488Z Brassica rapa HOM05D006060 ORTHO05D007268 1.6e-26 123.2 98 63.3
Lalb_Chr10g0098731 Lupinus albus HOM05D006060 ORTHO05D007268 1.6e-26 123.2 115 53.0
Mapoly0056s0111 Marchantia polymorpha HOM05D006060 ORTHO05D007268 2.8e-26 122.5 99 58.6
BraA09t39056Z Brassica rapa HOM05D006060 ORTHO05D007268 3.6e-26 122.1 111 60.4
BraA07t29067Z Brassica rapa HOM05D006060 ORTHO05D007268 4.7e-26 121.7 132 55.3
arahy.Tifrunner.gnm1.ann1.KWWI2Y Arachis hypogaea HOM05D006060 ORTHO05D007268 1.8e-25 119.8 132 51.5
Cc11_g12110 Coffea canephora HOM05D006060 ORTHO05D007268 4.0e-25 118.6 68 76.5
Pp3c14_19070 Physcomitrium patens HOM05D006060 ORTHO05D007268 1.2e-24 117.1 98 57.1
SMO351G0453 Selaginella moellendorffii HOM05D006060 ORTHO05D007268 2.6e-24 115.9 106 50.9
Haze_11918 Corylus avellana HOM05D006060 ORTHO05D007268 1.1e-22 110.5 68 72.1
COL.COLO4_27898 Corchorus olitorius HOM05D006060 ORTHO05D007268 6.0e-21 104.8 67 70.1
AUR62007927 Chenopodium quinoa HOM05D006060 ORTHO05D007268 3.9e-20 102.1 175 39.4
C02p24560 Brassica napus HOM05D006060 ORTHO05D007268 3.1e-17 92.4 82 59.8
DCAR_007189 Daucus carota HOM05D006060 ORTHO05D007268 2.1e-13 79.7 51 68.6
TPR.G29681 Trifolium pratense HOM05D006060 ORTHO05D007268 8.7e-12 74.3 53 62.3
A07p29750 Brassica napus HOM05D006060 ORTHO05D007268 4.3e-11 72.0 80 53.8
CBR_g4585 Chara braunii HOM05D006060 ORTHO05D007268 1.4e-09 67.0 95 35.8
Cc11_g12100 Coffea canephora HOM05D006060 ORTHO05D007268 1.8e-09 66.6 85 49.4
BcaB03g11990 Brassica carinata HOM05D006060 ORTHO05D007268 3.1e-09 65.9 49 63.3


User provided reference genes

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