Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028307 Solanum tuberosum HOM05D004533 ORTHO05D005347 2.8e-121 439.1 311 100.0
Solyc05g012030.1 Solanum lycopersicum HOM05D004533 ORTHO05D005347 6.6e-70 268.5 324 59.3
Peaxi162Scf00175g00062 Petunia axillaris HOM05D004533 ORTHO05D005347 8.9e-59 231.5 331 57.1
Sopen05g006810 Solanum pennellii HOM05D004533 ORTHO05D005347 2.0e-50 203.8 222 65.8
Nitab4.5_0006154g0010 Nicotiana tabacum HOM05D004533 ORTHO05D005347 3.1e-43 179.9 311 50.5
Nitab4.5_0000027g0050 Nicotiana tabacum HOM05D004533 ORTHO05D005347 4.6e-39 166.0 302 48.7
Gohir.A03G105900 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.9e-38 162.9 345 40.3
MSTRG.2297 Avicennia marina HOM05D004533 ORTHO05D005347 8.1e-36 155.2 346 36.7
Cc11_g11730 Coffea canephora HOM05D004533 ORTHO05D005347 4.0e-35 152.9 338 38.8
Rhsim12G0073600 Rhododendron simsii HOM05D004533 ORTHO05D005347 1.3e-33 147.9 327 37.6
Gohir.D13G084000 Gossypium hirsutum HOM05D004533 ORTHO05D005347 6.4e-33 145.6 342 40.1
Gorai.013G095800 Gossypium raimondii HOM05D004533 ORTHO05D005347 6.4e-33 145.6 342 40.1
Duzib248G0866 Durio zibethinus HOM05D004533 ORTHO05D005347 5.4e-32 142.5 338 38.2
Gohir.A13G084500 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.5e-31 139.8 342 39.2
Gohir.D02G131100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 3.5e-31 139.8 346 39.9
Thecc.02G326400 Theobroma cacao HOM05D004533 ORTHO05D005347 3.9e-30 136.3 345 40.3
QL03p073504 Quercus lobata HOM05D004533 ORTHO05D005347 5.1e-30 136.0 331 39.0
Duzib268G0904 Durio zibethinus HOM05D004533 ORTHO05D005347 6.6e-30 135.6 349 40.1
Dinv20147 Davidia involucrata HOM05D004533 ORTHO05D005347 4.3e-29 132.9 318 36.8
Haze_11876 Corylus avellana HOM05D004533 ORTHO05D005347 5.6e-29 132.5 338 37.9
Hma1.2p1_0428F.1_g151070 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 7.3e-29 132.1 254 40.9
Gorai.005G147000 Gossypium raimondii HOM05D004533 ORTHO05D005347 9.6e-29 131.7 340 37.9
COL.COLO4_27845 Corchorus olitorius HOM05D004533 ORTHO05D005347 1.3e-28 131.3 356 46.3
Manes.01G025900 Manihot esculenta HOM05D004533 ORTHO05D005347 2.1e-28 130.6 336 37.5
Duzib251G0596 Durio zibethinus HOM05D004533 ORTHO05D005347 2.8e-28 130.2 342 40.4
TAR629G1049 Trochodendron aralioides HOM05D004533 ORTHO05D005347 6.2e-28 129.0 336 34.8
ECA233G1177 Erigeron canadensis HOM05D004533 ORTHO05D005347 4.0e-27 126.3 339 36.0
Psat2g098360 Pisum sativum HOM05D004533 ORTHO05D005347 4.0e-27 126.3 316 38.6
CiPaw.05G123000 Carya illinoinensis HOM05D004533 ORTHO05D005347 9.0e-27 125.2 342 39.5
Manes.05G112100 Manihot esculenta HOM05D004533 ORTHO05D005347 2.0e-26 124.0 340 38.2
TAR374G1471 Trochodendron aralioides HOM05D004533 ORTHO05D005347 2.6e-26 123.6 249 38.2
vmacro01308 Vaccinium macrocarpon HOM05D004533 ORTHO05D005347 2.6e-26 123.6 313 36.1
ECA234G4159 Erigeron canadensis HOM05D004533 ORTHO05D005347 4.4e-26 122.9 348 35.9
Hma1.2p1_0473F.1_g160260 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 4.4e-26 122.9 325 36.0
Atru.chr11.1592 Acer truncatum HOM05D004533 ORTHO05D005347 5.8e-26 122.5 342 42.7
Oeu048133.1 Olea europaea HOM05D004533 ORTHO05D005347 7.6e-26 122.1 330 37.3
Oeu048134.1 Olea europaea HOM05D004533 ORTHO05D005347 7.6e-26 122.1 330 37.3
CSS0048067 Camellia sinensis var. sinensis HOM05D004533 ORTHO05D005347 9.9e-26 121.7 330 38.5
Gorai.008G175700 Gossypium raimondii HOM05D004533 ORTHO05D005347 2.2e-25 120.6 331 34.1
Hma1.2p1_3075F.1_g332390 Hydrangea macrophylla HOM05D004533 ORTHO05D005347 2.9e-25 120.2 339 35.4
Sabra10G0118800 Salix brachista HOM05D004533 ORTHO05D005347 4.2e-24 116.3 351 35.9
CsaV3_6G033770 Cucumis sativus L. HOM05D004533 ORTHO05D005347 5.4e-24 115.9 348 35.1
Cpa.g.sc1.160 Carica papaya HOM05D004533 ORTHO05D005347 9.3e-24 115.2 338 40.2
CiPaw.06G093700 Carya illinoinensis HOM05D004533 ORTHO05D005347 9.3e-24 115.2 341 34.6
TAR371G0131 Trochodendron aralioides HOM05D004533 ORTHO05D005347 1.2e-23 114.8 317 39.4
Oeu028724.1 Olea europaea HOM05D004533 ORTHO05D005347 2.1e-23 114.0 315 39.0
Cfa008857 Carpinus fangiana HOM05D004533 ORTHO05D005347 2.7e-23 113.6 334 38.9
EL10Ac6g15027 Beta vulgaris HOM05D004533 ORTHO05D005347 4.6e-23 112.8 238 37.8
Ciclev10032087m.g Citrus clementina HOM05D004533 ORTHO05D005347 4.6e-23 112.8 334 38.6
MSTRG.13457 Avicennia marina HOM05D004533 ORTHO05D005347 7.9e-23 112.1 326 35.0
Ah.03g138730 Amaranthus hybridus HOM05D004533 ORTHO05D005347 2.3e-22 110.5 332 40.1
ClCG08G010520 Citrullus lanatus HOM05D004533 ORTHO05D005347 2.3e-22 110.5 346 33.2
MELO3C011411.2 Cucumis melo HOM05D004533 ORTHO05D005347 2.3e-22 110.5 344 33.4
TWI75G1153 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.0e-22 110.2 314 34.7
Aqoxy3G03701 Aquilegia oxysepala HOM05D004533 ORTHO05D005347 3.9e-22 109.8 336 34.5
SGA_v2.0_scaffold287G47174 Striga asiatica HOM05D004533 ORTHO05D005347 3.9e-22 109.8 313 38.3
TWI31G0640 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 8.7e-22 108.6 313 34.8
Nn4g23503 Nelumbo nucifera HOM05D004533 ORTHO05D005347 5.6e-21 105.9 338 37.3
MSTRG.7732 Avicennia marina HOM05D004533 ORTHO05D005347 7.3e-21 105.5 326 36.2
TPR.G38582 Trifolium pratense HOM05D004533 ORTHO05D005347 7.3e-21 105.5 315 36.2
Lsat_1_v5_gn_4_11700 Lactuca sativa HOM05D004533 ORTHO05D005347 2.1e-20 104.0 338 36.4
Oeu020361.1 Olea europaea HOM05D004533 ORTHO05D005347 2.1e-20 104.0 293 33.4
Dinv34043 Davidia involucrata HOM05D004533 ORTHO05D005347 2.8e-20 103.6 314 36.0
Potri.008G098200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.6e-20 103.2 340 36.2
Potri.010G154200 Populus trichocarpa HOM05D004533 ORTHO05D005347 3.6e-20 103.2 339 32.7
TWI79G0987 Tripterygium wilfordii HOM05D004533 ORTHO05D005347 3.6e-20 103.2 312 34.6
Lj2g0015000 Lotus japonicus HOM05D004533 ORTHO05D005347 4.8e-20 102.8 331 33.8
Medtr5g046750 Medicago truncatula HOM05D004533 ORTHO05D005347 4.8e-20 102.8 322 36.0
MBI16_g39936_MAGBIO Magnolia biondii HOM05D004533 ORTHO05D005347 6.2e-20 102.4 308 34.7
Ca_05043_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 8.1e-20 102.1 315 35.6
Ca_19594_v3 Cicer arietinum L. HOM05D004533 ORTHO05D005347 8.1e-20 102.1 315 35.6
DCAR_023748 Daucus carota HOM05D004533 ORTHO05D005347 8.1e-20 102.1 334 38.0
Rhsim09G0125000 Rhododendron simsii HOM05D004533 ORTHO05D005347 8.1e-20 102.1 329 35.0
Lalb_Chr17g0341371 Lupinus albus HOM05D004533 ORTHO05D005347 1.4e-19 101.3 322 35.7
Prupe.1G290400 Prunus persica HOM05D004533 ORTHO05D005347 1.4e-19 101.3 364 37.1
Sed0020971 Sechium edule HOM05D004533 ORTHO05D005347 1.4e-19 101.3 344 30.5
Eucgr.B03139 Eucalyptus grandis HOM05D004533 ORTHO05D005347 1.8e-19 100.9 348 33.9
Gohir.D12G163100 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.8e-19 100.9 331 34.4
Lalb_Chr10g0099071 Lupinus albus HOM05D004533 ORTHO05D005347 1.8e-19 100.9 331 34.4
THA.LOC104798855 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.0e-19 99.8 319 34.5
THA.LOC104803161 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.0e-19 99.8 319 34.5
THA.LOC104822894 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 4.0e-19 99.8 319 34.5
DCAR_030051 Daucus carota HOM05D004533 ORTHO05D005347 9.0e-19 98.6 321 34.6
Gohir.A12G159800 Gossypium hirsutum HOM05D004533 ORTHO05D005347 1.5e-18 97.8 321 33.0
Actinidia26533 Actinidia chinensis HOM05D004533 ORTHO05D005347 2.6e-18 97.1 316 35.1
FvH4_4g29630 Fragaria vesca HOM05D004533 ORTHO05D005347 5.8e-18 95.9 332 38.0
FAN12G3098 Fragaria x ananassa HOM05D004533 ORTHO05D005347 5.8e-18 95.9 332 38.0
Lj6P776T6 Lonicera japonica HOM05D004533 ORTHO05D005347 5.8e-18 95.9 215 36.7
FAN17G0049 Fragaria x ananassa HOM05D004533 ORTHO05D005347 9.9e-18 95.1 334 37.7
CsaV3_5G033410 Cucumis sativus L. HOM05D004533 ORTHO05D005347 1.3e-17 94.7 308 30.8
Actinidia19907 Actinidia chinensis HOM05D004533 ORTHO05D005347 3.8e-17 93.2 306 34.6
MD16G1058700 Malus domestica HOM05D004533 ORTHO05D005347 3.8e-17 93.2 344 34.6
PSO017G3527 Papaver somniferum HOM05D004533 ORTHO05D005347 3.8e-17 93.2 361 31.3
PSO478G4496 Papaver somniferum HOM05D004533 ORTHO05D005347 4.9e-17 92.8 353 28.6
Phvul.003G039500 Phaseolus vulgaris HOM05D004533 ORTHO05D005347 1.1e-16 91.7 348 32.5
FAN07G1881 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.4e-16 91.3 332 37.3
MELO3C012160.2 Cucumis melo HOM05D004533 ORTHO05D005347 1.9e-16 90.9 309 33.3
DCAR_026684 Daucus carota HOM05D004533 ORTHO05D005347 1.9e-16 90.9 342 30.7
FAN22G0793 Fragaria x ananassa HOM05D004533 ORTHO05D005347 1.9e-16 90.9 332 37.0
HanXRQChr12g0363201 Helianthus annuus HOM05D004533 ORTHO05D005347 2.4e-16 90.5 336 31.8
MD13G1059400 Malus domestica HOM05D004533 ORTHO05D005347 5.5e-16 89.4 332 34.0
Sabra08G0074200 Salix brachista HOM05D004533 ORTHO05D005347 9.3e-16 88.6 342 36.3
Ah.02g126770 Amaranthus hybridus HOM05D004533 ORTHO05D005347 1.6e-15 87.8 324 35.5
arahy.Tifrunner.gnm1.ann1.PV72KB Arachis hypogaea HOM05D004533 ORTHO05D005347 2.7e-15 87.0 381 28.9
arahy.Tifrunner.gnm1.ann1.NK9Z7F Arachis hypogaea HOM05D004533 ORTHO05D005347 3.5e-15 86.7 364 31.3
Actinidia16147 Actinidia chinensis HOM05D004533 ORTHO05D005347 4.6e-15 86.3 228 39.5
RcHm_v2.0_Chr4g0437861 Rosa chinensis HOM05D004533 ORTHO05D005347 6.0e-15 85.9 331 39.3
Actinidia13399 Actinidia chinensis HOM05D004533 ORTHO05D005347 1.0e-14 85.1 260 37.3
Lsat_1_v5_gn_8_45920 Lactuca sativa HOM05D004533 ORTHO05D005347 1.0e-14 85.1 336 33.0
Sed0009680 Sechium edule HOM05D004533 ORTHO05D005347 1.0e-14 85.1 296 30.1
Sc11g0002570 Simmondsia chinensis HOM05D004533 ORTHO05D005347 3.9e-14 83.2 310 32.6
BolC2t08676H Brassica oleracea HOM05D004533 ORTHO05D005347 1.5e-13 81.3 323 37.8
C02p26000 Brassica napus HOM05D004533 ORTHO05D005347 2.5e-13 80.5 323 37.8
BcaC03g15057 Brassica carinata HOM05D004533 ORTHO05D005347 3.3e-13 80.1 323 37.5
Glyma.01G063800 Glycine max HOM05D004533 ORTHO05D005347 4.3e-13 79.7 361 30.2
Glyma.02G121400 Glycine max HOM05D004533 ORTHO05D005347 7.4e-13 79.0 368 31.5
Sp5g24200 Schrenkiella parvula HOM05D004533 ORTHO05D005347 7.4e-13 79.0 323 35.3
THA.LOC104821996 Tarenaya hassleriana HOM05D004533 ORTHO05D005347 9.6e-13 78.6 295 31.9
A02p15640 Brassica napus HOM05D004533 ORTHO05D005347 1.6e-12 77.8 320 37.2
Carub.0002s1576 Capsella rubella HOM05D004533 ORTHO05D005347 1.6e-12 77.8 315 34.0
BraA02t06624Z Brassica rapa HOM05D004533 ORTHO05D005347 2.8e-12 77.0 320 33.4
AT1G69160 Arabidopsis thaliana HOM05D004533 ORTHO05D005347 3.7e-12 76.6 314 33.1
ClCG05G023610 Citrullus lanatus HOM05D004533 ORTHO05D005347 4.8e-12 76.3 321 30.5
ATR0827G049 Amborella trichopoda HOM05D004533 ORTHO05D005347 8.1e-12 75.5 331 32.3
BcaB03g15876 Brassica carinata HOM05D004533 ORTHO05D005347 1.8e-11 74.3 307 35.8
AL2G28250 Arabidopsis lyrata HOM05D004533 ORTHO05D005347 4.0e-11 73.2 331 32.9
BraA07t31139Z Brassica rapa HOM05D004533 ORTHO05D005347 4.0e-11 73.2 309 37.5
C06p40740 Brassica napus HOM05D004533 ORTHO05D005347 9.0e-11 72.0 313 37.4
A07p35490 Brassica napus HOM05D004533 ORTHO05D005347 1.5e-10 71.2 321 34.3
Aa31LG4G11830 Aethionema arabicum HOM05D004533 ORTHO05D005347 2.6e-10 70.5 289 34.3
BcaC08g46370 Brassica carinata HOM05D004533 ORTHO05D005347 3.4e-10 70.1 313 37.1
BolC6t39358H Brassica oleracea HOM05D004533 ORTHO05D005347 3.4e-10 70.1 313 37.1
CARHR062030 Cardamine hirsuta HOM05D004533 ORTHO05D005347 4.5e-10 69.7 318 35.8
Thhalv10018878m.g Eutrema salsugineum HOM05D004533 ORTHO05D005347 5.8e-10 69.3 314 37.3
PSO063G5982 Papaver somniferum HOM05D004533 ORTHO05D005347 1.0e-09 68.6 328 32.3
DCAR_007202 Daucus carota HOM05D004533 ORTHO05D005347 4.9e-09 66.2 313 34.8
PGR102G1315 Punica granatum HOM05D004533 ORTHO05D005347 4.9e-09 66.2 323 37.8
VMungo1215G1442 Vigna mungo HOM05D004533 ORTHO05D005347 1.4e-08 64.7 236 33.5
PSO782G4709 Papaver somniferum HOM05D004533 ORTHO05D005347 1.9e-08 64.3 329 34.3
PGR119G0103 Punica granatum HOM05D004533 ORTHO05D005347 1.9e-08 64.3 326 38.7
Migut.E00039 Erythranthe guttata HOM05D004533 ORTHO05D005347 4.2e-08 63.2 306 31.0
Sc04g0007440 Simmondsia chinensis HOM05D004533 ORTHO05D005347 5.5e-08 62.8 310 28.7
CANSAT64G2295 Cannabis sativa HOM05D004533 ORTHO05D005347 1.0e-06 58.5 383 42.0
BcaC08g45911 Brassica carinata HOM05D004533 ORTHO05D005347 3.9e-06 56.6 229 39.7
BcaC08g45912 Brassica carinata HOM05D004533 ORTHO05D005347 6.7e-06 55.8 231 39.4


User provided reference genes

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