Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028305 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.4e-84 316.6 510 100.0
Solyc05g011960.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 1.8e-61 241.1 175 88.6
Sopen05g006700 Solanum pennellii HOM05D005042 ORTHO05D006080 1.8e-61 241.1 175 89.1
CAN.G1021.18 Capsicum annuum HOM05D005042 ORTHO05D006080 5.0e-51 206.5 176 61.9
CAN.G1021.20 Capsicum annuum HOM05D005042 ORTHO05D006080 2.8e-46 190.7 176 66.5
CAN.G1021.19 Capsicum annuum HOM05D005042 ORTHO05D006080 4.5e-44 183.3 175 64.0
CAN.G1021.24 Capsicum annuum HOM05D005042 ORTHO05D006080 3.7e-38 163.7 187 62.0
CAN.G1021.3 Capsicum annuum HOM05D005042 ORTHO05D006080 3.6e-33 147.1 88 85.2
Nitab4.5_0012072g0010 Nicotiana tabacum HOM05D005042 ORTHO05D006080 4.7e-33 146.7 88 83.0
PGSC0003DMG400028304 Solanum tuberosum HOM05D005042 ORTHO05D006080 3.1e-32 144.1 88 80.7
Nitab4.5_0000027g0180 Nicotiana tabacum HOM05D005042 ORTHO05D006080 6.8e-32 142.9 146 71.9
Solyc05g011950.3 Solanum lycopersicum HOM05D005042 ORTHO05D006080 2.6e-31 141.0 88 81.8
Solyc05g011930.4 Solanum lycopersicum HOM05D005042 ORTHO05D006080 5.8e-31 139.8 88 78.4
Sopen05g006670 Solanum pennellii HOM05D005042 ORTHO05D006080 5.8e-31 139.8 88 78.4
CAN.G1021.10 Capsicum annuum HOM05D005042 ORTHO05D006080 2.2e-30 137.9 87 77.0
Peaxi162Scf00188g01341 Petunia axillaris HOM05D005042 ORTHO05D006080 4.1e-29 133.7 93 75.3
CSS0000751 Camellia sinensis var. sinensis HOM05D005042 ORTHO05D006080 2.5e-26 124.4 89 70.8
Haze_11871 Corylus avellana HOM05D005042 ORTHO05D006080 2.5e-26 124.4 89 71.9
Cpa.g.sc1.165 Carica papaya HOM05D005042 ORTHO05D006080 3.3e-26 124.0 89 71.9
Cfa008851 Carpinus fangiana HOM05D005042 ORTHO05D006080 3.3e-26 124.0 89 70.8
MD16G1056300 Malus domestica HOM05D005042 ORTHO05D006080 7.3e-26 122.9 89 70.8
Cc11_g11610 Coffea canephora HOM05D005042 ORTHO05D006080 1.2e-25 122.1 90 68.9
CiPaw.06G094600 Carya illinoinensis HOM05D005042 ORTHO05D006080 1.6e-25 121.7 90 68.9
Manes.01G025000 Manihot esculenta HOM05D005042 ORTHO05D006080 1.6e-25 121.7 89 70.8
vmacro01299 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.6e-25 121.7 87 71.3
Prupe.1G292900 Prunus persica HOM05D005042 ORTHO05D006080 2.1e-25 121.3 89 68.5
Actinidia07770 Actinidia chinensis HOM05D005042 ORTHO05D006080 3.6e-25 120.6 88 70.5
Lj3A1027T86 Lonicera japonica HOM05D005042 ORTHO05D006080 4.7e-25 120.2 89 70.8
CiPaw.05G122400 Carya illinoinensis HOM05D005042 ORTHO05D006080 6.2e-25 119.8 89 69.7
Rhsim12G0071400 Rhododendron simsii HOM05D005042 ORTHO05D006080 6.2e-25 119.8 141 50.4
Lj2g0019338 Lotus japonicus HOM05D005042 ORTHO05D006080 1.1e-24 119.0 86 66.3
MD13G1056900 Malus domestica HOM05D005042 ORTHO05D006080 1.1e-24 119.0 89 68.5
Thhalv10018302m.g Eutrema salsugineum HOM05D005042 ORTHO05D006080 1.8e-24 118.2 86 66.3
Thecc.02G323700 Theobroma cacao HOM05D005042 ORTHO05D006080 1.8e-24 118.2 89 66.3
DCAR_007205 Daucus carota HOM05D005042 ORTHO05D006080 3.1e-24 117.5 87 65.5
Atru.chr11.1578 Acer truncatum HOM05D005042 ORTHO05D006080 4.0e-24 117.1 89 68.5
CANSAT11G1456 Cannabis sativa HOM05D005042 ORTHO05D006080 5.2e-24 116.7 89 67.4
Eucgr.G02425 Eucalyptus grandis HOM05D005042 ORTHO05D006080 6.8e-24 116.3 86 66.3
Glyma.01G064400 Glycine max HOM05D005042 ORTHO05D006080 8.9e-24 115.9 89 65.2
Glyma.02G122200 Glycine max HOM05D005042 ORTHO05D006080 8.9e-24 115.9 86 66.3
TAR726G0003 Trochodendron aralioides HOM05D005042 ORTHO05D006080 1.2e-23 115.5 89 66.3
COL.COLO4_27836 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.5e-23 115.2 84 69.0
Duzib251G0840 Durio zibethinus HOM05D005042 ORTHO05D006080 1.5e-23 115.2 87 67.8
HanXRQChr17g0570091 Helianthus annuus HOM05D005042 ORTHO05D006080 1.5e-23 115.2 86 67.4
Potri.008G109100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.5e-23 115.2 89 67.4
Potri.010G139100 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.5e-23 115.2 89 67.4
Potri.T155180 Populus trichocarpa HOM05D005042 ORTHO05D006080 1.5e-23 115.2 89 67.4
RcHm_v2.0_Chr4g0437421 Rosa chinensis HOM05D005042 ORTHO05D006080 1.5e-23 115.2 90 65.6
THA.LOC104821992 Tarenaya hassleriana HOM05D005042 ORTHO05D006080 2.0e-23 114.8 88 68.2
CDE10G0431 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 2.6e-23 114.4 89 64.0
Oeu055079.1 Olea europaea HOM05D005042 ORTHO05D006080 2.6e-23 114.4 89 66.3
Nn4g23527 Nelumbo nucifera HOM05D005042 ORTHO05D006080 3.4e-23 114.0 89 67.4
Dinv34024 Davidia involucrata HOM05D005042 ORTHO05D006080 5.8e-23 113.2 86 68.6
Sabra08G0082800 Salix brachista HOM05D005042 ORTHO05D006080 7.5e-23 112.8 89 66.3
ECA246G3902 Erigeron canadensis HOM05D005042 ORTHO05D006080 9.9e-23 112.5 85 65.9
TWI31G0262 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 9.9e-23 112.5 83 68.7
TAR371G1247 Trochodendron aralioides HOM05D005042 ORTHO05D006080 9.9e-23 112.5 87 66.7
Aa31LG4G11790 Aethionema arabicum HOM05D005042 ORTHO05D006080 2.2e-22 111.3 87 64.4
TWI79G1206 Tripterygium wilfordii HOM05D005042 ORTHO05D006080 2.9e-22 110.9 89 66.3
CARHR061940 Cardamine hirsuta HOM05D005042 ORTHO05D006080 3.7e-22 110.5 81 67.9
MBI16_g07040_MAGBIO Magnolia biondii HOM05D005042 ORTHO05D006080 3.7e-22 110.5 89 64.0
VMungo1215G3453 Vigna mungo HOM05D005042 ORTHO05D006080 3.7e-22 110.5 89 62.9
C06p40780 Brassica napus HOM05D005042 ORTHO05D006080 4.9e-22 110.2 86 62.8
BolC6t39355H Brassica oleracea HOM05D005042 ORTHO05D006080 4.9e-22 110.2 86 62.8
Ciclev10030834m.g Citrus clementina HOM05D005042 ORTHO05D006080 4.9e-22 110.2 86 66.3
Gohir.A05G306900 Gossypium hirsutum HOM05D005042 ORTHO05D006080 4.9e-22 110.2 81 69.1
Gohir.D05G307200 Gossypium hirsutum HOM05D005042 ORTHO05D006080 6.4e-22 109.8 78 70.5
Gorai.009G327100 Gossypium raimondii HOM05D005042 ORTHO05D006080 6.4e-22 109.8 78 70.5
CsaV3_6G033840 Cucumis sativus L. HOM05D005042 ORTHO05D006080 8.3e-22 109.4 89 66.3
Lsat_1_v5_gn_3_106381 Lactuca sativa HOM05D005042 ORTHO05D006080 8.3e-22 109.4 86 65.1
Lalb_Chr10g0099121 Lupinus albus HOM05D005042 ORTHO05D006080 8.3e-22 109.4 84 67.9
PSO478G2238 Papaver somniferum HOM05D005042 ORTHO05D006080 8.3e-22 109.4 89 66.3
Sopen05g006680 Solanum pennellii HOM05D000061 ORTHO05D000050 1.9e-21 108.2 71 77.5
AT1G69060 Arabidopsis thaliana HOM05D005042 ORTHO05D006080 2.4e-21 107.8 87 62.1
Lsat_1_v5_gn_4_25561 Lactuca sativa HOM05D005042 ORTHO05D006080 2.4e-21 107.8 84 63.1
Sp5g24160 Schrenkiella parvula HOM05D005042 ORTHO05D006080 2.4e-21 107.8 80 65.0
arahy.Tifrunner.gnm1.ann1.L0BNS4 Arachis hypogaea HOM05D005042 ORTHO05D006080 3.2e-21 107.5 88 61.4
CDE10G0071 Ceratophyllum demersum HOM05D005042 ORTHO05D006080 3.2e-21 107.5 87 62.1
DCAR_023741 Daucus carota HOM05D005042 ORTHO05D006080 3.2e-21 107.5 83 66.3
DCAR_030054 Daucus carota HOM05D005042 ORTHO05D006080 3.2e-21 107.5 87 62.1
PSO017G3437 Papaver somniferum HOM05D005042 ORTHO05D006080 3.2e-21 107.5 89 64.0
MELO3C011406.2 Cucumis melo HOM05D005042 ORTHO05D006080 4.1e-21 107.1 89 65.2
FAN12G1549 Fragaria x ananassa HOM05D005042 ORTHO05D006080 4.1e-21 107.1 90 61.1
Lalb_Chr17g0341431 Lupinus albus HOM05D005042 ORTHO05D006080 4.1e-21 107.1 84 67.9
PSO063G2731 Papaver somniferum HOM05D005042 ORTHO05D006080 4.1e-21 107.1 88 65.9
Ah.03g138660 Amaranthus hybridus HOM05D000485 ORTHO05D000341 7.1e-21 106.3 87 63.2
ECA234G0547 Erigeron canadensis HOM05D005042 ORTHO05D006080 7.1e-21 106.3 87 60.9
AL2G28110 Arabidopsis lyrata HOM05D005042 ORTHO05D006080 9.2e-21 105.9 79 65.8
FAN17G2893 Fragaria x ananassa HOM05D005042 ORTHO05D006080 9.2e-21 105.9 90 62.2
PGR119G2532 Punica granatum HOM05D005042 ORTHO05D006080 9.2e-21 105.9 81 65.4
ATR0827G068 Amborella trichopoda HOM05D005042 ORTHO05D006080 1.2e-20 105.5 91 61.5
EL10Ac6g14684 Beta vulgaris HOM05D005042 ORTHO05D006080 1.2e-20 105.5 87 63.2
GSVIVG01012257001 Vitis vinifera HOM05D005042 ORTHO05D006080 1.6e-20 105.1 75 72.0
FAN22G1919 Fragaria x ananassa HOM05D005042 ORTHO05D006080 2.1e-20 104.8 90 61.1
TAR629G0517 Trochodendron aralioides HOM05D005042 ORTHO05D006080 2.1e-20 104.8 79 69.6
FvH4_4g29350 Fragaria vesca HOM05D005042 ORTHO05D006080 3.5e-20 104.0 90 60.0
Oeu024162.6 Olea europaea HOM05D005042 ORTHO05D006080 3.5e-20 104.0 86 61.6
PSO782G3512 Papaver somniferum HOM05D005042 ORTHO05D006080 3.5e-20 104.0 88 64.8
Phvul.003G038600 Phaseolus vulgaris HOM05D005042 ORTHO05D006080 3.5e-20 104.0 84 63.1
Migut.E00252 Erythranthe guttata HOM05D005042 ORTHO05D006080 4.6e-20 103.6 86 62.8
Psat2g093520 Pisum sativum HOM05D005042 ORTHO05D006080 4.6e-20 103.6 89 58.4
Aqoxy3G03731 Aquilegia oxysepala HOM05D005042 ORTHO05D006080 6.0e-20 103.2 88 62.5
A07p35450 Brassica napus HOM05D005042 ORTHO05D006080 6.0e-20 103.2 80 63.8
BraA07t31136Z Brassica rapa HOM05D005042 ORTHO05D006080 6.0e-20 103.2 80 63.8
HanXRQChr16g0527171 Helianthus annuus HOM05D005042 ORTHO05D006080 6.0e-20 103.2 84 66.7
Oeu057419.1 Olea europaea HOM05D005042 ORTHO05D006080 6.0e-20 103.2 90 60.0
AUR62003064 Chenopodium quinoa HOM05D005042 ORTHO05D006080 7.8e-20 102.8 86 64.0
AUR62007879 Chenopodium quinoa HOM05D005042 ORTHO05D006080 7.8e-20 102.8 86 62.8
Hund25158 Selenicereus undatus HOM05D005042 ORTHO05D006080 7.8e-20 102.8 86 61.6
Oeu021807.1 Olea europaea HOM05D005042 ORTHO05D006080 1.7e-19 101.7 88 60.2
HPP92_000883 Vanilla planifolia HOM05D005042 ORTHO05D006080 1.7e-19 101.7 86 60.5
Dinv15585 Davidia involucrata HOM05D005042 ORTHO05D006080 3.9e-19 100.5 72 72.2
Medtr5g047140 Medicago truncatula HOM05D005042 ORTHO05D006080 5.1e-19 100.1 89 57.3
SGA_v2.0_scaffold287G47187 Striga asiatica HOM05D005042 ORTHO05D006080 6.6e-19 99.8 92 59.8
vmacro10479 Vaccinium macrocarpon HOM05D005042 ORTHO05D006080 1.1e-18 99.0 128 45.3
FAN07G1705 Fragaria x ananassa HOM05D005042 ORTHO05D006080 1.5e-18 98.6 90 60.0
unitig_62.g23700 Utricularia gibba HOM05D005042 ORTHO05D006080 2.5e-18 97.8 85 63.5
Sc04g0007390 Simmondsia chinensis HOM05D005042 ORTHO05D006080 1.2e-17 95.5 71 64.8
TPR.G34179 Trifolium pratense HOM05D005042 ORTHO05D006080 1.6e-17 95.1 89 55.1
arahy.Tifrunner.gnm1.ann1.U4ZHW1 Arachis hypogaea HOM05D005042 ORTHO05D006080 2.1e-17 94.7 99 50.5
QL05p008217 Quercus lobata HOM05D005042 ORTHO05D006080 2.1e-17 94.7 86 59.3
TPR.G37754 Trifolium pratense HOM05D005042 ORTHO05D006080 3.6e-17 94.0 90 54.4
Carub.0002s1568 Capsella rubella HOM05D005042 ORTHO05D006080 1.4e-16 92.0 65 70.8
SEGI_40784 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.4e-16 92.0 91 52.7
Ca_05058_v3 Cicer arietinum L. HOM05D005042 ORTHO05D006080 4.0e-16 90.5 84 53.6
ClCG08G010560 Citrullus lanatus HOM05D005042 ORTHO05D006080 5.2e-16 90.1 124 45.2
Os03g0752700 Oryza sativa ssp. japonica HOM05D005042 ORTHO05D006080 3.4e-15 87.4 85 56.5
Zm00001eb057530 Zea mays HOM05D005042 ORTHO05D006080 5.8e-15 86.7 88 56.8
Rhsim09G0122700 Rhododendron simsii HOM05D005042 ORTHO05D006080 1.3e-14 85.5 170 35.3
AagrBONN_evm.TU.Sc2ySwM_117.2775 Anthoceros agrestis HOM05D005042 ORTHO05D006080 2.9e-14 84.3 91 52.7
Pp3c2_29040 Physcomitrium patens HOM05D005042 ORTHO05D006080 3.8e-14 84.0 93 49.5
SEGI_37091 Sequoiadendron giganteum HOM05D005042 ORTHO05D006080 1.1e-13 82.4 90 47.8
Pp3c1_680 Physcomitrium patens HOM05D005042 ORTHO05D006080 5.4e-13 80.1 92 50.0
COL.COLO4_27818 Corchorus olitorius HOM05D005042 ORTHO05D006080 1.2e-12 79.0 82 47.6
CBR_g19648 Chara braunii HOM05D005042 ORTHO05D006080 3.5e-12 77.4 86 53.5
Mapoly0211s0012 Marchantia polymorpha HOM05D005042 ORTHO05D006080 3.5e-12 77.4 82 48.8
Sopen05g006690 Solanum pennellii HOM05D005042 ORTHO05D006080 2.1e-09 68.2 51 62.7
TPR.G38503 Trifolium pratense HOM05D005042 ORTHO05D006080 9.0e-08 62.8 57 54.4


User provided reference genes

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