Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028194 Solanum tuberosum HOM05D003548 ORTHO05D004066 6.6e-203 711.1 533 100.0
PGSC0003DMG400012172 Solanum tuberosum HOM05D003548 ORTHO05D004066 3.7e-137 492.7 565 79.1
Sopen08g030060 Solanum pennellii HOM05D003548 ORTHO05D004066 3.4e-135 486.1 565 77.9
Solyc08g081760.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 3.3e-130 469.5 557 77.7
CAN.G532.68 Capsicum annuum HOM05D003548 ORTHO05D004066 2.6e-127 459.9 566 74.7
Peaxi162Scf00074g00156 Petunia axillaris HOM05D003548 ORTHO05D004066 2.7e-108 396.7 565 69.2
Peaxi162Scf00102g01614 Petunia axillaris HOM05D003548 ORTHO05D004066 1.2e-79 301.6 563 60.4
Nitab4.5_0007898g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 3.7e-73 280.0 250 82.0
Nitab4.5_0002944g0150 Nicotiana tabacum HOM05D003548 ORTHO05D004066 4.7e-68 263.1 557 58.3
Solyc08g008180.3 Solanum lycopersicum HOM05D003548 ORTHO05D004066 6.8e-67 259.2 566 58.0
Sopen08g004030 Solanum pennellii HOM05D003548 ORTHO05D004066 9.8e-66 255.4 566 57.6
CSS0042414 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.9e-65 253.1 572 56.6
CSS0019271 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 6.4e-65 252.7 572 56.6
Cc08_g15520 Coffea canephora HOM05D003548 ORTHO05D004066 3.0e-62 243.8 569 55.9
PGSC0003DMG400005830 Solanum tuberosum HOM05D003548 ORTHO05D004066 6.2e-60 236.1 538 58.7
Nitab4.5_0005339g0010 Nicotiana tabacum HOM05D003548 ORTHO05D004066 1.1e-59 235.3 557 57.1
Nitab4.5_0000966g0040 Nicotiana tabacum HOM05D000302 ORTHO05D000334 1.4e-59 235.0 154 77.9
Dinv37570 Davidia involucrata HOM05D003548 ORTHO05D004066 1.3e-57 228.4 575 56.2
Hma1.2p1_0216F.1_g091270 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 1.5e-53 214.9 543 56.4
Thecc.03G289200 Theobroma cacao HOM05D003548 ORTHO05D004066 1.4e-51 208.4 571 54.3
Dinv38885 Davidia involucrata HOM05D003548 ORTHO05D004066 4.4e-50 203.4 576 55.0
Haze_08718 Corylus avellana HOM05D003548 ORTHO05D004066 3.2e-48 197.2 571 54.5
Prupe.5G110700 Prunus persica HOM05D003548 ORTHO05D004066 4.6e-47 193.4 568 53.9
Potri.001G097200 Populus trichocarpa HOM05D003548 ORTHO05D004066 1.3e-46 191.8 576 54.5
Cfa012267 Carpinus fangiana HOM05D003548 ORTHO05D004066 3.0e-46 190.7 570 53.2
Oeu063042.1 Olea europaea HOM05D003548 ORTHO05D004066 1.5e-45 188.3 562 53.6
CSS0034195 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 4.3e-45 186.8 507 57.2
Gohir.D09G185600 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.3e-44 185.3 572 52.8
Gorai.006G208300 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.3e-44 185.3 572 52.8
Potri.003G134200 Populus trichocarpa HOM05D003548 ORTHO05D004066 1.3e-44 185.3 572 53.5
Sabra01G0072500 Salix brachista HOM05D003548 ORTHO05D004066 3.6e-44 183.7 576 53.5
Migut.A00697 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.1e-43 182.2 570 54.7
Sabra03G0096600 Salix brachista HOM05D003548 ORTHO05D004066 1.4e-43 181.8 562 54.3
Gohir.A09G191100 Gossypium hirsutum HOM05D003548 ORTHO05D004066 3.1e-43 180.6 571 52.2
GSVIVG01019448001 Vitis vinifera HOM05D003548 ORTHO05D004066 5.3e-43 179.9 536 48.5
Duzib205G0585 Durio zibethinus HOM05D003548 ORTHO05D004066 9.0e-43 179.1 571 54.1
Oeu059583.1 Olea europaea HOM05D003548 ORTHO05D004066 4.4e-42 176.8 551 52.6
TAR636G0920 Trochodendron aralioides HOM05D003548 ORTHO05D004066 5.8e-42 176.4 584 53.6
COL.COLO4_08334 Corchorus olitorius HOM05D003548 ORTHO05D004066 2.2e-41 174.5 538 53.3
DCAR_008526 Daucus carota HOM05D003548 ORTHO05D004066 2.2e-41 174.5 572 51.6
Oeu042375.2 Olea europaea HOM05D003548 ORTHO05D004066 2.9e-41 174.1 561 52.2
CiPaw.11G126900 Carya illinoinensis HOM05D003548 ORTHO05D004066 4.9e-41 173.3 578 52.6
Manes.02G014900 Manihot esculenta HOM05D003548 ORTHO05D004066 4.9e-41 173.3 575 52.2
SalBow1G7748 Salvia bowleyana HOM05D003548 ORTHO05D004066 8.4e-41 172.6 571 53.2
TWI15G1126 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 8.4e-41 172.6 556 52.3
MSTRG.11944 Avicennia marina HOM05D003548 ORTHO05D004066 1.1e-40 172.2 567 52.4
PSO063G3847 Papaver somniferum HOM05D003548 ORTHO05D004066 1.1e-40 172.2 566 52.7
MSTRG.25643 Avicennia marina HOM05D003548 ORTHO05D004066 1.4e-40 171.8 561 53.3
MD06G1096100 Malus domestica HOM05D003548 ORTHO05D004066 1.9e-40 171.4 568 52.5
Atru.chr9.2080 Acer truncatum HOM05D003548 ORTHO05D004066 5.4e-40 169.9 573 52.5
QL02p032544 Quercus lobata HOM05D003548 ORTHO05D004066 9.3e-40 169.1 547 54.1
Duzib084G0464 Durio zibethinus HOM05D003548 ORTHO05D004066 7.9e-39 166.0 562 52.5
Duzib068G0600 Durio zibethinus HOM05D003548 ORTHO05D004066 1.3e-38 165.2 578 52.4
Glyma.08G019800 Glycine max HOM05D003548 ORTHO05D004066 1.3e-38 165.2 574 50.5
VMungo0251G1700 Vigna mungo HOM05D003548 ORTHO05D004066 1.3e-38 165.2 571 50.6
Gohir.A02G103700 Gossypium hirsutum HOM05D003548 ORTHO05D004066 8.7e-38 162.5 574 51.4
Gorai.003G083700 Gossypium raimondii HOM05D003548 ORTHO05D004066 1.5e-37 161.8 574 51.4
Glyma.05G213300 Glycine max HOM05D003548 ORTHO05D004066 2.5e-37 161.0 572 50.2
TWI81G0889 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 7.3e-37 159.5 554 52.0
PSO170G6721 Papaver somniferum HOM05D003548 ORTHO05D004066 1.6e-36 158.3 560 52.1
arahy.Tifrunner.gnm1.ann1.36D870 Arachis hypogaea HOM05D003548 ORTHO05D004066 1.1e-35 155.6 567 51.1
arahy.Tifrunner.gnm1.ann1.59PT6M Arachis hypogaea HOM05D003548 ORTHO05D004066 1.1e-35 155.6 566 50.0
CiPaw.12G087100 Carya illinoinensis HOM05D003548 ORTHO05D004066 1.4e-35 155.2 554 52.9
TWI60G0243 Tripterygium wilfordii HOM05D003548 ORTHO05D004066 1.8e-35 154.8 553 52.1
CANSAT21G0595 Cannabis sativa HOM05D003548 ORTHO05D004066 3.1e-35 154.1 569 50.6
Lalb_Chr16g0390341 Lupinus albus HOM05D003548 ORTHO05D004066 2.0e-34 151.4 564 50.9
Eucgr.E00807 Eucalyptus grandis HOM05D003548 ORTHO05D004066 5.8e-34 149.8 560 50.7
Phvul.002G294600 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 7.6e-34 149.4 541 51.9
Aqoxy5G04044 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.7e-33 148.3 552 51.4
Ciclev10019140m.g Citrus clementina HOM05D003548 ORTHO05D004066 2.9e-33 147.5 573 50.3
Lj4g0009292 Lotus japonicus HOM05D003548 ORTHO05D004066 2.9e-33 147.5 573 50.1
TAR629G2865 Trochodendron aralioides HOM05D003548 ORTHO05D004066 1.9e-32 144.8 586 49.5
DCAR_006852 Daucus carota HOM05D003548 ORTHO05D004066 2.7e-31 141.0 562 47.7
Rhsim02G0237200 Rhododendron simsii HOM05D003548 ORTHO05D004066 4.6e-31 140.2 582 51.2
ClCG01G002150 Citrullus lanatus HOM05D003548 ORTHO05D004066 1.8e-30 138.3 567 49.6
MD14G1116300 Malus domestica HOM05D003548 ORTHO05D004066 1.5e-29 135.2 569 50.3
CsaV3_5G002270 Cucumis sativus L. HOM05D003548 ORTHO05D004066 3.3e-29 134.0 566 49.5
Nn1g01756 Nelumbo nucifera HOM05D003548 ORTHO05D004066 7.4e-29 132.9 492 54.3
MELO3C005727.2 Cucumis melo HOM05D003548 ORTHO05D004066 1.6e-28 131.7 566 49.5
MBI06_g29318_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 2.1e-28 131.3 575 49.7
Psat7g029120 Pisum sativum HOM05D003548 ORTHO05D004066 4.8e-28 130.2 575 49.2
Sed0003878 Sechium edule HOM05D003548 ORTHO05D004066 5.3e-27 126.7 568 48.8
Gohir.D03G080200 Gossypium hirsutum HOM05D003548 ORTHO05D004066 1.5e-26 125.2 163 48.5
Rhsim02G0237300 Rhododendron simsii HOM05D003548 ORTHO05D004066 2.0e-26 124.8 257 59.1
Glyma.01G223400 Glycine max HOM05D003548 ORTHO05D004066 2.6e-26 124.4 554 49.1
Gohir.D03G080300 Gossypium hirsutum HOM05D003548 ORTHO05D004066 2.2e-25 121.3 182 42.9
SalBow1G6595 Salvia bowleyana HOM05D003548 ORTHO05D004066 3.8e-25 120.6 185 44.9
ECA246G0635 Erigeron canadensis HOM05D003548 ORTHO05D004066 4.2e-24 117.1 565 50.1
Sed0010954 Sechium edule HOM05D003548 ORTHO05D004066 2.1e-23 114.8 572 48.8
Medtr8g099105 Medicago truncatula HOM05D003548 ORTHO05D004066 6.0e-23 113.2 182 40.7
FAN18G1037 Fragaria x ananassa HOM05D003548 ORTHO05D004066 7.9e-23 112.8 154 47.4
FAN04G1462 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.0e-22 112.5 154 47.4
Dinv28355 Davidia involucrata HOM05D003548 ORTHO05D004066 3.9e-22 110.5 577 48.2
THA.LOC104809354 Tarenaya hassleriana HOM05D003548 ORTHO05D004066 3.9e-22 110.5 554 50.0
Sc01g0009980 Simmondsia chinensis HOM05D003548 ORTHO05D004066 6.7e-22 109.8 175 40.0
TPR.G3387 Trifolium pratense HOM05D000059 ORTHO05D004066 6.7e-22 109.8 546 49.1
Aqoxy7G00221 Aquilegia oxysepala HOM05D003548 ORTHO05D004066 1.9e-21 108.2 554 49.1
FAN04G2241 Fragaria x ananassa HOM05D003548 ORTHO05D004066 3.3e-21 107.5 158 43.7
Lj2P175T19 Lonicera japonica HOM05D003548 ORTHO05D004066 5.7e-21 106.7 524 52.9
Eucgr.D01792 Eucalyptus grandis HOM05D003548 ORTHO05D004066 7.4e-21 106.3 526 49.6
Ca_10964_v3 Cicer arietinum L. HOM05D003548 ORTHO05D004066 9.6e-21 105.9 576 47.9
FAN13G1218 Fragaria x ananassa HOM05D003548 ORTHO05D004066 1.6e-20 105.1 153 45.1
ECA233G1322 Erigeron canadensis HOM05D003548 ORTHO05D004066 2.1e-20 104.8 137 47.4
FvH4_5g03650 Fragaria vesca HOM05D003548 ORTHO05D004066 2.1e-20 104.8 584 47.3
FAN13G0102 Fragaria x ananassa HOM05D003548 ORTHO05D004066 6.3e-20 103.2 586 47.1
Dinv35294 Davidia involucrata HOM05D003548 ORTHO05D004066 1.1e-19 102.4 574 47.6
PSO135G0411 Papaver somniferum HOM05D003548 ORTHO05D004066 1.1e-19 102.4 567 48.3
Hund11425 Selenicereus undatus HOM05D000154 ORTHO05D004066 1.1e-19 102.4 183 37.2
MBI07_g06320_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.4e-19 102.1 526 47.7
PSO384G2366 Papaver somniferum HOM05D003548 ORTHO05D004066 1.4e-19 102.1 556 48.7
EL10Ac5g12854 Beta vulgaris HOM05D003548 ORTHO05D004066 2.4e-19 101.3 163 38.7
Aa31LG2G1190 Aethionema arabicum HOM05D003548 ORTHO05D004066 5.3e-19 100.1 569 48.7
RcHm_v2.0_Chr7g0196081 Rosa chinensis HOM05D003548 ORTHO05D004066 2.0e-18 98.2 187 35.8
HanXRQChr17g0533931 Helianthus annuus HOM05D003548 ORTHO05D004066 2.6e-18 97.8 571 49.7
Ah.12g052120 Amaranthus hybridus HOM05D000265 ORTHO05D000161 5.9e-18 96.7 171 36.8
CSS0041240 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.9e-18 96.7 184 37.5
CSS0049608 Camellia sinensis var. sinensis HOM05D003548 ORTHO05D004066 5.9e-18 96.7 184 37.5
Oeu042369.1 Olea europaea HOM05D003548 ORTHO05D004066 5.9e-18 96.7 144 44.4
GSVIVG01028755001 Vitis vinifera HOM05D003548 ORTHO05D004066 1.0e-17 95.9 183 38.3
CDE10G0521 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 1.7e-17 95.1 538 48.1
MBI07_g38645_MAGBIO Magnolia biondii HOM05D003548 ORTHO05D004066 1.7e-17 95.1 544 50.4
HanXRQChr06g0166281 Helianthus annuus HOM05D003548 ORTHO05D004066 2.2e-17 94.7 536 49.3
Phvul.002G161400 Phaseolus vulgaris HOM05D003548 ORTHO05D004066 2.2e-17 94.7 563 44.8
unitig_32.g11608 Utricularia gibba HOM05D003548 ORTHO05D004066 8.4e-17 92.8 182 40.1
AUR62019776 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.9e-16 91.7 172 35.5
CDE04G3080 Ceratophyllum demersum HOM05D003548 ORTHO05D004066 2.5e-16 91.3 540 48.1
SGA_v2.0_scaffold96G28999 Striga asiatica HOM05D003548 ORTHO05D004066 5.5e-16 90.1 183 38.8
AUR62010777 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.2e-15 89.0 171 34.5
Cc02_g02080 Coffea canephora HOM05D003548 ORTHO05D004066 1.2e-15 89.0 182 35.7
PGR031G0552 Punica granatum HOM05D003548 ORTHO05D004066 1.6e-15 88.6 555 46.5
Os01g0621900 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 2.1e-15 88.2 546 47.6
Thhalv10023333m.g Eutrema salsugineum HOM05D003548 ORTHO05D004066 3.5e-15 87.4 554 49.1
Oeu003337.1 Olea europaea HOM05D003548 ORTHO05D004066 4.6e-15 87.0 184 37.5
Oeu050927.1 Olea europaea HOM05D003548 ORTHO05D004066 4.6e-15 87.0 550 39.3
PGR042G3215 Punica granatum HOM05D003548 ORTHO05D004066 4.6e-15 87.0 135 40.0
Lsat_1_v5_gn_9_57161 Lactuca sativa HOM05D003548 ORTHO05D004066 6.1e-15 86.7 516 43.4
Actinidia08610 Actinidia chinensis HOM05D003548 ORTHO05D004066 1.0e-14 85.9 189 34.9
Sc13g0009440 Simmondsia chinensis HOM05D003548 ORTHO05D004066 1.0e-14 85.9 185 37.3
AL2G10890 Arabidopsis lyrata HOM05D003548 ORTHO05D004066 1.3e-14 85.5 560 48.0
Hma1.2p1_0142F.1_g064160 Hydrangea macrophylla HOM05D003548 ORTHO05D004066 3.0e-14 84.3 145 39.3
Sp2g00590 Schrenkiella parvula HOM05D003548 ORTHO05D004066 6.7e-14 83.2 555 48.6
Oeu050928.1 Olea europaea HOM05D003548 ORTHO05D004066 1.1e-13 82.4 184 33.2
AUR62031460 Chenopodium quinoa HOM05D003548 ORTHO05D004066 4.3e-13 80.5 124 43.5
Zm00001eb159560 Zea mays HOM05D003548 ORTHO05D004066 5.7e-13 80.1 130 37.7
Carub.0002s0067 Capsella rubella HOM05D003548 ORTHO05D004066 7.4e-13 79.7 191 37.2
AT1G64140 Arabidopsis thaliana HOM05D003548 ORTHO05D004066 9.7e-13 79.3 557 47.6
unitig_748.g7420 Utricularia gibba HOM05D003548 ORTHO05D004066 1.3e-12 79.0 183 36.6
A09p14120 Brassica napus HOM05D003548 ORTHO05D004066 2.2e-12 78.2 159 35.8
Actinidia34177 Actinidia chinensis HOM05D003548 ORTHO05D004066 2.8e-12 77.8 190 34.2
Zm00001eb344910 Zea mays HOM05D003548 ORTHO05D004066 2.8e-12 77.8 137 40.9
CARHR046800 Cardamine hirsuta HOM05D003548 ORTHO05D004066 4.8e-12 77.0 560 47.3
BcaB07g31439 Brassica carinata HOM05D003548 ORTHO05D008486 6.3e-12 76.6 194 37.6
C09p17010 Brassica napus HOM05D003548 ORTHO05D004066 8.2e-12 76.3 138 39.9
BraA09t37059Z Brassica rapa HOM05D003548 ORTHO05D004066 8.2e-12 76.3 138 37.0
BcaC04g22655 Brassica carinata HOM05D003548 ORTHO05D004066 1.1e-11 75.9 138 39.1
AUR62021071 Chenopodium quinoa HOM05D003548 ORTHO05D004066 1.4e-11 75.5 122 41.0
EL10Ac3g05370 Beta vulgaris HOM05D003548 ORTHO05D004066 1.8e-11 75.1 557 44.7
BcaB07g31525 Brassica carinata HOM05D003548 ORTHO05D004066 1.8e-11 75.1 557 47.8
unitig_46.g18812 Utricularia gibba HOM05D003548 ORTHO05D004066 1.8e-11 75.1 189 36.0
BolC9t54599H Brassica oleracea HOM05D003548 ORTHO05D004066 3.1e-11 74.3 138 39.9
vmacro06591 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 3.1e-11 74.3 148 39.9
SEGI_28658 Sequoiadendron giganteum HOM05D003548 ORTHO05D004066 4.1e-11 73.9 191 33.5
ATR1131G034 Amborella trichopoda HOM05D003548 ORTHO05D004066 6.9e-11 73.2 140 37.9
A09p14950 Brassica napus HOM05D003548 ORTHO05D004066 6.9e-11 73.2 136 40.4
BraA09t37140Z Brassica rapa HOM05D003548 ORTHO05D004066 6.9e-11 73.2 136 40.4
HPP92_006483 Vanilla planifolia HOM05D003548 ORTHO05D004066 1.5e-10 72.0 151 36.4
BolC9t54704H Brassica oleracea HOM05D003548 ORTHO05D004066 2.0e-10 71.6 193 36.3
Os06g0523100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 5.9e-10 70.1 122 36.9
Rhsim03G0196900 Rhododendron simsii HOM05D003548 ORTHO05D004066 7.7e-10 69.7 185 34.1
Ah.13g069690 Amaranthus hybridus HOM05D003548 ORTHO05D004066 2.9e-09 67.8 189 29.6
BcaC04g22534 Brassica carinata HOM05D003548 ORTHO05D004066 2.9e-09 67.8 557 47.6
C09p18070 Brassica napus HOM05D003548 ORTHO05D004066 2.9e-09 67.8 557 47.6
SMO115G0264 Selaginella moellendorffii HOM05D003963 ORTHO05D004558 3.8e-09 67.4 162 32.1
Zm00001eb238000 Zea mays HOM05D003548 ORTHO05D004066 5.0e-09 67.0 194 34.5
VMungo1215G2254 Vigna mungo HOM05D003548 ORTHO05D004066 8.5e-09 66.2 148 37.2
Migut.F01061 Erythranthe guttata HOM05D003548 ORTHO05D004066 1.1e-08 65.9 170 32.9
HanXRQChr09g0253141 Helianthus annuus HOM05D003548 ORTHO05D004066 1.1e-08 65.9 150 38.0
FAN08G0634 Fragaria x ananassa HOM05D003548 ORTHO05D029492 1.4e-08 65.5 121 39.7
HPP92_023971 Vanilla planifolia HOM05D003548 ORTHO05D004066 2.5e-08 64.7 119 39.5
GSVIVG01003094001 Vitis vinifera HOM05D003548 ORTHO05D004066 9.4e-08 62.8 98 44.9
vmacro11418 Vaccinium macrocarpon HOM05D003548 ORTHO05D004066 2.7e-07 61.2 156 64.7
SHI07056 Sapria himalayana HOM05D003548 ORTHO05D004066 3.6e-07 60.8 176 33.0
Zm00001eb204020 Zea mays HOM05D003548 ORTHO05D004066 4.6e-07 60.5 185 31.9
ECA232G3387 Erigeron canadensis HOM05D003548 ORTHO05D004066 6.1e-07 60.1 184 33.7
Actinidia28070 Actinidia chinensis HOM05D003963 ORTHO05D004558 3.9e-06 57.4 120 31.7
Lj1P1010T36 Lonicera japonica HOM05D003548 ORTHO05D004066 8.8e-06 56.2 149 32.2
Os02g0259100 Oryza sativa ssp. japonica HOM05D003548 ORTHO05D004066 8.8e-06 56.2 193 32.1


User provided reference genes

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