Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400028129 Solanum tuberosum HOM05D005267 ORTHO05D006303 7.1e-133 477.2 236 100.0
Solyc10g081590.2 Solanum lycopersicum HOM05D005267 ORTHO05D006303 1.1e-130 469.9 236 97.9
Sopen10g032100 Solanum pennellii HOM05D005267 ORTHO05D006303 9.5e-130 466.8 236 97.5
Nitab4.5_0006454g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.2e-111 406.8 242 84.7
Nitab4.5_0008653g0020 Nicotiana tabacum HOM05D005267 ORTHO05D006303 1.5e-111 406.4 242 84.3
Cc06_g07120 Coffea canephora HOM05D005267 ORTHO05D006303 2.2e-94 349.4 218 74.3
Actinidia37788 Actinidia chinensis HOM05D005267 ORTHO05D006303 4.9e-94 348.2 234 70.5
Oeu063094.3 Olea europaea HOM05D005267 ORTHO05D006303 5.5e-93 344.7 210 78.6
SGA_v2.0_scaffold41G15783 Striga asiatica HOM05D005267 ORTHO05D006303 7.9e-92 340.9 216 75.0
CSS0044429 Camellia sinensis var. sinensis HOM05D005267 ORTHO05D006303 5.1e-91 338.2 233 69.5
Rhsim03G0057300 Rhododendron simsii HOM05D005267 ORTHO05D006303 1.6e-89 333.2 239 67.4
arahy.Tifrunner.gnm1.ann1.3RXG3F Arachis hypogaea HOM05D005267 ORTHO05D006303 2.8e-89 332.4 238 69.3
Migut.L01860 Erythranthe guttata HOM05D005267 ORTHO05D006303 2.8e-89 332.4 216 72.2
Atru.chr8.1242 Acer truncatum HOM05D005267 ORTHO05D006303 3.7e-89 332.0 234 70.1
HanXRQChr01g0026301 Helianthus annuus HOM05D005267 ORTHO05D006303 4.8e-89 331.6 238 69.7
arahy.Tifrunner.gnm1.ann1.H25EQ1 Arachis hypogaea HOM05D005267 ORTHO05D006303 6.2e-89 331.3 238 68.9
Ca_18103_v3 Cicer arietinum L. HOM05D005267 ORTHO05D006303 6.2e-89 331.3 217 72.4
Psat6g110480 Pisum sativum HOM05D005267 ORTHO05D006303 3.1e-88 328.9 220 70.9
Glyma.02G167800 Glycine max HOM05D005267 ORTHO05D006303 4.1e-88 328.6 217 72.8
Duzib128G1921 Durio zibethinus HOM05D005267 ORTHO05D006303 9.0e-88 327.4 242 67.8
MELO3C024594.2 Cucumis melo HOM05D005267 ORTHO05D006303 1.2e-87 327.0 220 70.9
Medtr1g054315 Medicago truncatula HOM05D005267 ORTHO05D006303 1.5e-87 326.6 219 72.6
COL.COLO4_29458 Corchorus olitorius HOM05D005267 ORTHO05D006303 2.6e-87 325.9 241 67.6
ClCG01G015080 Citrullus lanatus HOM05D005267 ORTHO05D006303 4.5e-87 325.1 221 70.1
Lalb_Chr02g0153991 Lupinus albus HOM05D005267 ORTHO05D006303 4.5e-87 325.1 214 72.9
CsaV3_6G041190 Cucumis sativus L. HOM05D005267 ORTHO05D006303 5.8e-87 324.7 220 70.9
Lalb_Chr21g0316191 Lupinus albus HOM05D005267 ORTHO05D006303 1.3e-86 323.6 216 71.3
Peaxi162Scf00060g01112 Petunia axillaris HOM05D005267 ORTHO05D006303 1.3e-86 323.6 233 73.0
Glyma.09G103300 Glycine max HOM05D005267 ORTHO05D006303 2.9e-86 322.4 217 71.4
Lj5g0006264 Lotus japonicus HOM05D005267 ORTHO05D006303 2.9e-86 322.4 217 71.0
PGR142G1416 Punica granatum HOM05D005267 ORTHO05D006303 2.9e-86 322.4 218 72.5
Thecc.05G181400 Theobroma cacao HOM05D005267 ORTHO05D006303 2.9e-86 322.4 241 67.2
TPR.G30771 Trifolium pratense HOM05D005267 ORTHO05D006303 3.8e-86 322.0 217 71.0
TAR623G0682 Trochodendron aralioides HOM05D005267 ORTHO05D006303 5.0e-86 321.6 211 72.5
MBI05_g37655_MAGBIO Magnolia biondii HOM05D005267 ORTHO05D006303 1.1e-85 320.5 239 66.1
Nn6g32442 Nelumbo nucifera HOM05D005267 ORTHO05D006303 1.4e-85 320.1 231 67.1
Lsat_1_v5_gn_1_56341 Lactuca sativa HOM05D005267 ORTHO05D006303 2.5e-85 319.3 222 71.2
ECA248G0309 Erigeron canadensis HOM05D005267 ORTHO05D006303 3.2e-85 318.9 219 70.8
DCAR_013470 Daucus carota HOM05D006729 ORTHO05D008502 7.1e-85 317.8 210 72.9
Cfa020104 Carpinus fangiana HOM05D005267 ORTHO05D006303 1.2e-84 317.0 220 70.0
Eucgr.A02521 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.2e-84 317.0 217 73.7
Ciclev10012610m.g Citrus clementina HOM05D005267 ORTHO05D006303 1.6e-84 316.6 239 66.5
Cpa.g.sc85.6 Carica papaya HOM05D005267 ORTHO05D006303 3.5e-84 315.5 220 67.7
Haze_20086 Corylus avellana HOM05D005267 ORTHO05D006303 1.3e-83 313.5 220 68.6
RcHm_v2.0_Chr3g0477741 Rosa chinensis HOM05D005267 ORTHO05D006303 3.9e-83 312.0 216 68.5
RcHm_v2.0_Chr3g0477781 Rosa chinensis HOM05D005267 ORTHO05D006303 3.9e-83 312.0 216 68.5
Eucgr.A02526 Eucalyptus grandis HOM05D005267 ORTHO05D006303 1.1e-82 310.5 213 73.2
CANSAT64G2985 Cannabis sativa HOM05D005267 ORTHO05D006303 2.5e-82 309.3 226 65.9
QL07p025833 Quercus lobata HOM05D005267 ORTHO05D006303 3.3e-82 308.9 234 65.8
FAN05G1850 Fragaria x ananassa HOM05D005267 ORTHO05D006303 9.7e-82 307.4 225 67.6
Sed0012434 Sechium edule HOM05D005267 ORTHO05D006303 9.7e-82 307.4 215 68.8
FAN02G1071 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.3e-81 307.0 225 67.1
Phvul.007G264300 Phaseolus vulgaris HOM05D005267 ORTHO05D006303 1.3e-81 307.0 217 66.8
FvH4_6g21270 Fragaria vesca HOM05D005267 ORTHO05D006303 1.6e-81 306.6 225 67.1
VMungo0720G2658 Vigna mungo HOM05D005267 ORTHO05D006303 1.6e-81 306.6 217 66.8
CiPaw.10G022300 Carya illinoinensis HOM05D005267 ORTHO05D006303 2.8e-81 305.8 218 68.3
TWI77G0597 Tripterygium wilfordii HOM05D005267 ORTHO05D006303 2.8e-81 305.8 224 67.0
unitig_899.g15196 Utricularia gibba HOM05D005267 ORTHO05D006303 4.8e-81 305.1 216 68.1
GSVIVG01022470001 Vitis vinifera HOM05D005267 ORTHO05D006303 4.8e-81 305.1 207 69.1
Zm00001eb057270 Zea mays HOM05D005267 ORTHO05D006303 8.2e-81 304.3 221 66.5
FAN14G1206 Fragaria x ananassa HOM05D005267 ORTHO05D006303 1.1e-80 303.9 225 66.2
Potri.016G063600 Populus trichocarpa HOM05D005267 ORTHO05D006303 1.8e-80 303.1 215 69.3
Lj1A1066G52 Lonicera japonica HOM05D005267 ORTHO05D006303 5.3e-80 301.6 237 66.7
FAN05G5707 Fragaria x ananassa HOM05D005267 ORTHO05D006303 3.4e-79 298.9 239 63.6
Prupe.7G087000 Prunus persica HOM05D005267 ORTHO05D006303 3.4e-79 298.9 220 67.7
Aqoxy1G00565 Aquilegia oxysepala HOM05D005267 ORTHO05D006303 5.9e-79 298.1 217 67.3
PSO384G1433 Papaver somniferum HOM05D005267 ORTHO05D006303 1.3e-78 297.0 213 69.0
Thhalv10006199m.g Eutrema salsugineum HOM05D005267 ORTHO05D006303 1.1e-77 293.9 223 66.8
CDE05G1441 Ceratophyllum demersum HOM05D005267 ORTHO05D006303 2.5e-77 292.7 215 67.9
AUR62036286 Chenopodium quinoa HOM05D005267 ORTHO05D006303 3.2e-77 292.4 225 64.0
MD14G1048200 Malus domestica HOM05D005267 ORTHO05D006303 3.2e-77 292.4 235 62.1
THA.LOC104821240 Tarenaya hassleriana HOM05D005267 ORTHO05D006303 3.2e-77 292.4 223 65.5
Sabra16G0066000 Salix brachista HOM05D005267 ORTHO05D006303 5.5e-77 291.6 215 66.0
EL10Ac5g11779 Beta vulgaris HOM05D005267 ORTHO05D006303 4.6e-76 288.5 222 62.2
Carub.0005s2521 Capsella rubella HOM05D005267 ORTHO05D006303 6.1e-76 288.1 219 65.3
AL5G40230 Arabidopsis lyrata HOM05D005267 ORTHO05D006303 7.9e-76 287.7 223 65.5
CARHR168860 Cardamine hirsuta HOM05D005267 ORTHO05D006303 7.9e-76 287.7 223 65.9
AT3G58470 Arabidopsis thaliana HOM05D005267 ORTHO05D006303 1.4e-75 287.0 223 65.5
Sp5g04410 Schrenkiella parvula HOM05D005267 ORTHO05D006303 3.9e-75 285.4 223 65.0
Hund15032 Selenicereus undatus HOM05D005267 ORTHO05D006303 5.1e-75 285.0 221 63.8
BraA09t40549Z Brassica rapa HOM05D005267 ORTHO05D006303 1.5e-74 283.5 220 63.6
Os03g0749900 Oryza sativa ssp. japonica HOM05D005267 ORTHO05D006303 2.5e-74 282.7 222 63.1
Aa31LG10G13030 Aethionema arabicum HOM05D006729 ORTHO05D008502 9.7e-74 280.8 214 65.4
BcaC07g40203 Brassica carinata HOM05D005267 ORTHO05D006303 1.7e-73 280.0 224 62.5
AUR62039735 Chenopodium quinoa HOM05D005267 ORTHO05D006303 6.3e-73 278.1 242 58.3
BcaC07g40256 Brassica carinata HOM05D005267 ORTHO05D006303 1.8e-72 276.6 216 64.8
BolC8t50983H Brassica oleracea HOM05D006729 ORTHO05D008502 6.5e-70 268.1 221 62.9
C08p33850 Brassica napus HOM05D006729 ORTHO05D008502 1.4e-69 266.9 221 62.4
A09p51030 Brassica napus HOM05D006729 ORTHO05D008502 2.1e-68 263.1 218 61.0
ATR0697G123 Amborella trichopoda HOM05D006729 ORTHO05D008502 2.7e-68 262.7 213 60.1
CAN.G128.157 Capsicum annuum HOM05D005267 ORTHO05D006303 2.6e-66 256.1 131 90.8
Dinv11912 Davidia involucrata HOM05D005267 ORTHO05D006303 4.4e-66 255.4 220 61.4
Gorai.006G146100 Gossypium raimondii HOM05D005267 ORTHO05D006303 5.7e-66 255.0 263 54.4
Gohir.A09G131300 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.4e-64 250.4 241 55.2
Sc01g0005180 Simmondsia chinensis HOM05D005267 ORTHO05D006303 2.7e-60 236.1 181 66.9
Pp3c20_23410 Physcomitrium patens HOM05D005267 ORTHO05D006303 8.0e-60 234.6 236 50.8
Mapoly0207s0006 Marchantia polymorpha HOM05D005267 ORTHO05D006303 6.7e-59 231.5 225 52.0
Zm00001eb155770 Zea mays HOM05D000737 ORTHO05D006303 8.5e-54 214.5 175 61.1
vmacro07530 Vaccinium macrocarpon HOM05D005267 ORTHO05D006303 1.1e-53 214.2 129 76.0
Zm00001eb307210 Zea mays HOM05D005267 ORTHO05D006303 1.0e-51 207.6 172 60.5
Hund24301 Selenicereus undatus HOM05D005267 ORTHO05D006303 1.8e-51 206.8 124 74.2
Hund24299 Selenicereus undatus HOM05D005267 ORTHO05D006303 4.0e-51 205.7 124 73.4
Rhsim03G0057000 Rhododendron simsii HOM05D005267 ORTHO05D006303 2.0e-50 203.4 160 63.1
Gohir.D09G127600 Gossypium hirsutum HOM05D005267 ORTHO05D006303 9.1e-48 194.5 167 59.9
Gohir.D09G127100 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.7e-47 193.0 166 59.6
BcaC07g40255 Brassica carinata HOM05D005267 ORTHO05D006303 1.6e-44 183.7 181 56.9
Manes.08G038900 Manihot esculenta HOM05D005267 ORTHO05D006303 7.5e-42 174.9 147 59.9
arahy.Tifrunner.gnm1.ann1.TFGA9S Arachis hypogaea HOM05D005267 ORTHO05D006303 4.1e-40 169.1 125 63.2
CBR_g551 Chara braunii HOM05D005267 ORTHO05D006303 3.5e-39 166.0 253 36.0
Zm00001eb020160 Zea mays HOM05D005267 ORTHO05D006303 4.5e-39 165.6 104 73.1
SEGI_05913 Sequoiadendron giganteum HOM05D005267 ORTHO05D006303 2.9e-38 162.9 143 55.2
BolC4t23005H Brassica oleracea HOM05D005267 ORTHO05D006303 2.5e-37 159.8 133 56.4
Zm00001eb298070 Zea mays HOM05D005267 ORTHO05D006303 4.3e-37 159.1 135 57.0
AagrBONN_evm.TU.Sc2ySwM_344.4688 Anthoceros agrestis HOM05D005267 ORTHO05D006303 3.7e-33 146.0 143 47.6
C04p14160 Brassica napus HOM05D005267 ORTHO05D006303 3.5e-31 139.4 113 59.3
Gorai.011G111300 Gossypium raimondii HOM05D005267 ORTHO05D006303 8.0e-28 128.3 76 76.3
Gorai.001G205400 Gossypium raimondii HOM05D005267 ORTHO05D006303 8.9e-27 124.8 76 72.4
Gorai.013G089700 Gossypium raimondii HOM05D005267 ORTHO05D006303 8.9e-27 124.8 76 73.7
Gohir.D12G044850 Gossypium hirsutum HOM05D005267 ORTHO05D006303 1.2e-26 124.4 75 76.0
Gohir.D03G023232 Gossypium hirsutum HOM05D005267 ORTHO05D006303 2.6e-26 123.2 76 75.0
Gohir.A01G123000 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.4e-26 122.5 76 73.7
Gohir.A06G056200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 4.4e-26 122.5 76 73.7
Gohir.D08G106200 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.5e-26 121.7 75 74.7
Gohir.D11G259301 Gossypium hirsutum HOM05D005267 ORTHO05D006303 7.5e-26 121.7 75 74.7
Rhsim03G0056100 Rhododendron simsii HOM05D000045 ORTHO05D006303 1.7e-25 120.6 116 54.3
Zm00001eb334640 Zea mays HOM05D005267 ORTHO05D006303 1.7e-25 120.6 68 76.5
Zm00001eb096050 Zea mays HOM05D005267 ORTHO05D006303 4.9e-25 119.0 117 53.8
MSTRG.10424 Avicennia marina HOM05D005267 ORTHO05D006303 8.6e-22 108.2 106 52.8
arahy.Tifrunner.gnm1.ann1.74GVQ2 Arachis hypogaea HOM05D005267 ORTHO05D006303 1.5e-21 107.5 66 69.7
HPP92_004175 Vanilla planifolia HOM05D002029 ORTHO05D002158 2.1e-20 103.6 89 58.4
arahy.Tifrunner.gnm1.ann1.PYJ9JQ Arachis hypogaea HOM05D005267 ORTHO05D006303 1.9e-16 90.5 64 65.6
arahy.Tifrunner.gnm1.ann1.HYSL0N Arachis hypogaea HOM05D005267 ORTHO05D006303 5.4e-16 89.0 58 62.1
Glyma.03G214201 Glycine max HOM05D005267 ORTHO05D006303 1.6e-15 87.4 83 50.6
Gohir.D06G067600 Gossypium hirsutum HOM05D003508 ORTHO05D006303 1.6e-15 87.4 82 57.3
A04p02570 Brassica napus HOM05D005267 ORTHO05D006303 2.1e-15 87.0 75 56.0
BcaB02g08262 Brassica carinata HOM05D005267 ORTHO05D006303 7.8e-15 85.1 93 52.7
ClCG03G011770 Citrullus lanatus HOM05D000002 ORTHO05D015610 1.3e-14 84.3 55 65.5
Gohir.D06G044601 Gossypium hirsutum HOM05D003508 ORTHO05D006303 3.9e-14 82.8 42 83.3
VMungo0464G2161 Vigna mungo HOM05D005267 ORTHO05D006303 6.6e-14 82.0 141 34.8
Gorai.011G067100 Gossypium raimondii HOM05D005267 ORTHO05D006303 7.3e-13 78.6 51 68.6
Cfa022098 Carpinus fangiana HOM05D005267 ORTHO05D125748 6.2e-12 75.5 175 33.1
CBR_g49867 Chara braunii HOM05D000019 ORTHO05D000353 6.2e-12 75.5 166 26.5
BolC9t56010H Brassica oleracea HOM05D008384 ORTHO05D042359 6.8e-11 72.0 70 52.9
MCO14G360 Micromonas commoda HOM05D005267 ORTHO05D006303 1.2e-10 71.2 163 27.0
SMO143G0102 Selaginella moellendorffii HOM05D005267 ORTHO05D006303 1.2e-10 71.2 171 26.9
Pp3c20_11400 Physcomitrium patens HOM05D005267 ORTHO05D006303 1.7e-09 67.4 170 24.7
Mapoly0004s0240 Marchantia polymorpha HOM05D005267 ORTHO05D006303 3.7e-09 66.2 169 24.9
AagrBONN_evm.TU.Sc2ySwM_362.204 Anthoceros agrestis HOM05D005267 ORTHO05D006303 5.4e-08 62.4 130 30.0
Pp3c8_10880 Physcomitrium patens HOM05D005267 ORTHO05D006303 6.0e-07 58.9 206 21.8
arahy.Tifrunner.gnm1.ann1.4NE9EM Arachis hypogaea HOM05D005267 ORTHO05D006303 3.0e-06 56.6 34 64.7


User provided reference genes

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