Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.0e-71 272.3 140 100.0
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.0e-71 272.3 140 100.0
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.8e-63 243.8 134 93.3
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.6e-58 228.8 134 89.6
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.6e-58 228.8 134 89.6
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.6e-58 228.8 134 89.6
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 4.9e-49 198.0 142 76.1
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 1.2e-44 183.3 149 67.8
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 1.2e-42 176.8 136 76.5
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 2.6e-42 175.6 106 84.9
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 3.8e-41 171.8 106 84.0
PGSC0003DMG400027964 Solanum tuberosum HOM05D004182 ORTHO05D007321 1.1e-40 170.2 86 100.0
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 2.3e-38 162.5 108 77.8
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-37 158.7 96 87.5
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-37 158.7 96 87.5
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-37 158.7 96 87.5
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 3.3e-37 158.7 96 87.5
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 3.3e-37 158.7 96 87.5
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 3.3e-37 158.7 96 87.5
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 9.6e-37 157.1 104 80.8
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 6.2e-36 154.5 106 78.3
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 8.1e-36 154.1 94 88.3
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.8e-35 152.9 94 88.3
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 4.0e-35 151.8 96 84.4
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 4.0e-35 151.8 104 78.8
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 5.8e-34 147.9 83 91.6
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 9.9e-34 147.1 80 93.8
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 1.3e-33 146.7 83 90.4
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 1.3e-33 146.7 83 90.4
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 1.7e-33 146.4 167 55.7
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 2.2e-33 146.0 96 82.3
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.2e-33 146.0 97 82.5
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 2.9e-33 145.6 102 78.4
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 1.1e-32 143.7 94 83.0
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 1.4e-32 143.3 84 90.5
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 1.4e-32 143.3 106 73.6
Phvul.010G035850 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 3.2e-32 142.1 102 76.5
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 2.1e-31 139.4 85 87.1
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.1e-29 133.7 96 77.1
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.1e-29 133.7 108 72.2
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 1.5e-29 133.3 98 75.5
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.5e-29 133.3 96 76.0
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 1.9e-29 132.9 96 76.0
Sopen02g009080 Solanum pennellii HOM05D004182 ORTHO05D007321 1.9e-29 132.9 142 59.2
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 6.2e-28 127.9 91 78.0
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 2.0e-26 122.9 106 64.2
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 2.6e-26 122.5 96 70.8
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 5.8e-26 121.3 189 42.9
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 4.2e-24 115.2 95 68.4
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 6.0e-23 111.3 83 72.3
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 1.0e-22 110.5 109 61.5
BolSC35t60712H Brassica oleracea HOM05D004182 ORTHO05D007321 1.3e-20 103.6 54 92.6
BraSC103t45421Z Brassica rapa HOM05D004182 ORTHO05D007321 1.3e-20 103.6 54 92.6
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 1.8e-19 99.8 62 87.1
arahy.Tifrunner.gnm1.ann1.Y35SJI Arachis hypogaea HOM05D004182 ORTHO05D007321 2.4e-19 99.4 105 55.2
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 3.1e-19 99.0 58 89.7
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 3.1e-19 99.0 58 89.7
Atru.chr6.228 Acer truncatum HOM05D004182 ORTHO05D004271 5.3e-19 98.2 52 90.4
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 6.9e-19 97.8 61 86.9
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 4.5e-18 95.1 58 86.2
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 1.3e-17 93.6 59 81.4
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 2.9e-17 92.4 77 66.2
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 2.9e-17 92.4 58 86.2
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 2.9e-17 92.4 58 86.2
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 2.9e-17 92.4 58 86.2
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 4.9e-17 91.7 58 81.0
BraSC143t45651Z Brassica rapa HOM05D004182 ORTHO05D007321 6.5e-17 91.3 60 76.7
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 1.4e-16 90.1 69 71.0
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 1.4e-16 90.1 58 79.3
Sopen09g027020 Solanum pennellii HOM05D001966 ORTHO05D011119 1.9e-16 89.7 104 56.7
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 2.5e-16 89.4 58 82.8
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 3.2e-16 89.0 50 90.0
Sopen11g020180 Solanum pennellii HOM05D001966 ORTHO05D010127 3.2e-16 89.0 59 81.4
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 4.2e-16 88.6 58 79.3
BraSC58t46465Z Brassica rapa HOM05D004182 ORTHO05D007321 5.5e-16 88.2 61 77.0
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-16 87.8 58 82.8
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-16 87.8 58 82.8
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-16 87.8 58 82.8
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-16 87.8 58 82.8
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 7.1e-16 87.8 58 82.8
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 9.3e-16 87.4 74 66.2
Sopen09g015240 Solanum pennellii HOM05D000004 ORTHO05D011466 9.3e-16 87.4 46 93.5
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 1.2e-15 87.0 74 66.2
BraSC59t46543Z Brassica rapa HOM05D004182 ORTHO05D007321 1.6e-15 86.7 64 73.4
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 2.1e-15 86.3 58 77.6
Gohir.A05G323708 Gossypium hirsutum HOM05D004182 ORTHO05D007321 2.1e-15 86.3 48 87.5
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 6.0e-15 84.7 58 79.3
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 6.0e-15 84.7 58 81.0
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 6.0e-15 84.7 58 79.3
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 1.0e-14 84.0 58 77.6
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.0e-14 84.0 60 76.7
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.8e-14 83.2 59 81.4
Glyma.03G084500 Glycine max HOM05D004182 ORTHO05D007321 3.0e-14 82.4 71 67.6
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 5.1e-14 81.6 58 77.6
arahy.Tifrunner.gnm1.ann1.0KS2YP Arachis hypogaea HOM05D004182 ORTHO05D007321 6.7e-14 81.3 52 75.0
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 1.1e-13 80.5 81 58.0
Atru.chr1.3411 Acer truncatum HOM05D008259 ORTHO05D007321 1.9e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.1MX66Y Arachis hypogaea HOM05D008259 ORTHO05D010449 1.9e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.2N2B18 Arachis hypogaea HOM05D008259 ORTHO05D010449 1.9e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.A6TYH4 Arachis hypogaea HOM05D001966 ORTHO05D010449 1.9e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.EPN6WV Arachis hypogaea HOM05D001966 ORTHO05D010449 1.9e-13 79.7 37 100.0
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 1.9e-13 79.7 37 100.0
EL10As15g24132 Beta vulgaris HOM05D008259 ORTHO05D010449 1.9e-13 79.7 37 100.0
SHI36541 Sapria himalayana HOM05D001966 ORTHO05D010449 1.9e-13 79.7 37 100.0
Hund28446 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund28585 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund28944 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund28949 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund28959 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29107 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29184 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29242 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29271 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29275 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29279 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29283 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29451 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29497 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29785 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund29912 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund30004 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund30064 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
Hund30203 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.9e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.P0IFIP Arachis hypogaea HOM05D004182 ORTHO05D007321 2.5e-13 79.3 48 81.2
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.5e-13 79.3 69 68.1
arahy.Tifrunner.gnm1.ann1.CT1WFL Arachis hypogaea HOM05D008259 ORTHO05D010449 9.6e-13 77.4 36 100.0
arahy.Tifrunner.gnm1.ann1.F9I1DV Arachis hypogaea HOM05D008259 ORTHO05D010449 9.6e-13 77.4 36 100.0
Lj4g0021959 Lotus japonicus HOM05D008259 ORTHO05D010449 1.6e-12 76.6 37 97.3
arahy.Tifrunner.gnm1.ann1.K9UDI5 Arachis hypogaea HOM05D008259 ORTHO05D010449 2.1e-12 76.3 36 97.2
arahy.Tifrunner.gnm1.ann1.L1GII0 Arachis hypogaea HOM05D008259 ORTHO05D010449 4.8e-12 75.1 37 94.6
Gorai.007G250500 Gossypium raimondii HOM05D001966 ORTHO05D010449 8.2e-12 74.3 37 89.2
VMungo0720G0883 Vigna mungo HOM05D004182 ORTHO05D007321 8.2e-12 74.3 53 73.6
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.8e-11 73.2 58 72.4
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.8e-11 73.2 58 70.7
VMungo1127G1475 Vigna mungo HOM05D000959 ORTHO05D000775 3.1e-11 72.4 67 59.7
Gorai.007G258700 Gossypium raimondii HOM05D004182 ORTHO05D007321 6.9e-11 71.2 48 75.0
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 6.9e-11 71.2 40 90.0
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 9.0e-11 70.9 38 89.5
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 9.0e-11 70.9 61 63.9
Gohir.A07G125450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.2e-10 70.5 48 72.9
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 2.0e-10 69.7 47 80.9
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 3.4e-10 68.9 60 60.0
Gohir.D10G118433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 3.4e-10 68.9 48 68.8
Sed0024115 Sechium edule HOM05D004182 ORTHO05D007321 7.6e-10 67.8 39 89.7
arahy.Tifrunner.gnm1.ann1.5LAD0A Arachis hypogaea HOM05D004182 ORTHO05D007321 1.0e-09 67.4 69 56.5
Gohir.D11G237220 Gossypium hirsutum HOM05D001966 ORTHO05D010449 1.3e-09 67.0 33 87.9
Phvul.007G166000 Phaseolus vulgaris HOM05D008259 ORTHO05D010449 1.7e-09 66.6 33 93.9
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 3.8e-09 65.5 38 84.2
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 6.5e-09 64.7 65 64.6
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-08 63.5 58 63.8
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-08 63.5 58 63.8
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-08 63.5 58 63.8
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 1.4e-08 63.5 58 63.8
ECA247G0006 Erigeron canadensis HOM05D000006 ORTHO05D000001 2.5e-08 62.8 82 51.2
arahy.Tifrunner.gnm1.ann1.YI1HYY Arachis hypogaea HOM05D008259 ORTHO05D010449 4.2e-08 62.0 28 100.0
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 5.5e-08 61.6 55 60.0
FAN26G2239 Fragaria x ananassa HOM05D004182 ORTHO05D010449 1.6e-07 60.1 36 77.8
CAN.G1119.15 Capsicum annuum HOM05D002978 ORTHO05D003339 4.6e-07 58.5 59 59.3
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.0e-06 57.4 92 45.7
CAN.G1185.4 Capsicum annuum HOM05D000964 ORTHO05D003870 3.9e-06 55.5 31 83.9
Cpa.g.sc76.14 Carica papaya HOM05D004182 ORTHO05D007321 6.7e-06 54.7 56 57.1
Sed0012210 Sechium edule HOM05D004182 ORTHO05D007321 6.7e-06 54.7 25 100.0


User provided reference genes

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