Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027964 Solanum tuberosum HOM05D004182 ORTHO05D007321 1.8e-41 172.2 87 100.0
PGSC0003DMG400027965 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.3e-41 171.8 86 100.0
PGSC0003DMG400041917 Solanum tuberosum HOM05D004182 ORTHO05D007321 2.3e-41 171.8 86 100.0
Cpa.g.c43052.1 Carica papaya HOM05D004182 ORTHO05D007321 3.7e-39 164.5 86 96.5
Nn029s41584 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.4e-38 160.6 86 95.3
Nn212s45203 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.4e-38 160.6 86 95.3
Nn264s45947 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.4e-38 160.6 86 95.3
Nn304s46229 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.4e-38 160.6 86 95.3
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 3.9e-36 154.5 86 91.9
Sc21g0003840 Simmondsia chinensis HOM05D004182 ORTHO05D007321 8.6e-36 153.3 86 91.9
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 8.0e-34 146.7 96 83.3
Sc05g0004140 Simmondsia chinensis HOM05D001966 ORTHO05D011119 6.8e-33 143.7 86 86.0
Gohir.A04G039255 Gossypium hirsutum HOM05D004182 ORTHO05D007321 1.9e-30 135.6 97 77.3
Gohir.1Z049982 Gossypium hirsutum HOM05D004182 ORTHO05D007321 2.4e-30 135.2 97 76.3
Nn064s42221 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.4e-30 135.2 109 72.5
EL10Ac7g17372 Beta vulgaris HOM05D004182 ORTHO05D007321 3.2e-30 134.8 97 76.3
PGSC0003DMG400043035 Solanum tuberosum HOM05D004182 ORTHO05D007321 1.7e-28 129.0 91 78.0
Psat5g167880 Pisum sativum HOM05D000009 ORTHO05D000008 5.6e-27 124.0 96 70.8
Phvul.010G035850 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 1.2e-26 122.9 86 76.7
LjContig00318g0013893 Lotus japonicus HOM05D004182 ORTHO05D007321 5.2e-25 117.5 96 67.7
Psat4g168320 Pisum sativum HOM05D004182 ORTHO05D007321 8.9e-25 116.7 95 68.4
Hma1.2p1_0594F.1_g185812 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 2.6e-24 115.2 96 67.7
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 2.2e-23 112.1 96 66.7
EL10Ac8g19701 Beta vulgaris HOM05D004182 ORTHO05D007321 2.9e-23 111.7 109 61.5
Glyma.09G164000 Glycine max HOM05D004182 ORTHO05D007321 2.9e-23 111.7 83 72.3
Sopen06g015050 Solanum pennellii HOM05D004182 ORTHO05D007321 5.1e-20 100.9 59 89.8
Sopen09g020810 Solanum pennellii HOM05D004182 ORTHO05D007321 5.1e-20 100.9 59 89.8
Sopen10g016590 Solanum pennellii HOM05D004182 ORTHO05D007321 7.3e-19 97.1 59 86.4
BraSC58t46455Z Brassica rapa HOM05D004182 ORTHO05D007321 2.1e-18 95.5 58 86.2
BcaC04g20782 Brassica carinata HOM05D004182 ORTHO05D007321 4.7e-18 94.4 59 86.4
CARHR282390 Cardamine hirsuta HOM05D004182 ORTHO05D007321 4.7e-18 94.4 59 86.4
CARHR282490 Cardamine hirsuta HOM05D004182 ORTHO05D007321 4.7e-18 94.4 59 86.4
BolSC29t60499H Brassica oleracea HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BolSC29t60540H Brassica oleracea HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BolSC29t60624H Brassica oleracea HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BolSC35t60684H Brassica oleracea HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BolSC46t60966H Brassica oleracea HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BolSC47t61059H Brassica oleracea HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BolSC49t61134H Brassica oleracea HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BraSC138t45528Z Brassica rapa HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BraSC179t45780Z Brassica rapa HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
BraSC59t46534Z Brassica rapa HOM05D004182 ORTHO05D007321 6.2e-18 94.0 58 86.2
arahy.Tifrunner.gnm1.ann1.DWP51K Arachis hypogaea HOM05D000963 ORTHO05D007321 1.1e-17 93.2 58 81.0
arahy.Tifrunner.gnm1.ann1.QIZU11 Arachis hypogaea HOM05D007250 ORTHO05D009162 1.1e-17 93.2 58 81.0
arahy.Tifrunner.gnm1.ann1.TV6F30 Arachis hypogaea HOM05D004182 ORTHO05D007321 1.1e-17 93.2 58 81.0
arahy.Tifrunner.gnm1.ann1.8WTZ4N Arachis hypogaea HOM05D004182 ORTHO05D007321 2.4e-17 92.0 70 71.4
arahy.Tifrunner.gnm1.ann1.UTH6FS Arachis hypogaea HOM05D004182 ORTHO05D007321 2.4e-17 92.0 59 79.7
CARHR044290 Cardamine hirsuta HOM05D004182 ORTHO05D007321 4.0e-17 91.3 59 83.1
arahy.Tifrunner.gnm1.ann1.S1ZEXT Arachis hypogaea HOM05D004182 ORTHO05D007321 5.2e-17 90.9 51 90.2
arahy.Tifrunner.gnm1.ann1.04MME8 Arachis hypogaea HOM05D004182 ORTHO05D007321 6.8e-17 90.5 58 79.3
arahy.Tifrunner.gnm1.ann1.MI7UCB Arachis hypogaea HOM05D004182 ORTHO05D007321 6.8e-17 90.5 58 79.3
arahy.Tifrunner.gnm1.ann1.NV4G0I Arachis hypogaea HOM05D004182 ORTHO05D007321 6.8e-17 90.5 59 79.7
Nn219s45281 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.2e-16 89.7 59 83.1
Nn349s46475 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.2e-16 89.7 59 83.1
Nn403s46571 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.2e-16 89.7 59 83.1
Nn442s46688 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.2e-16 89.7 59 83.1
Nn4g25379 Nelumbo nucifera HOM05D004182 ORTHO05D007321 1.2e-16 89.7 59 83.1
VMungo0720G0997 Vigna mungo HOM05D004182 ORTHO05D007321 2.0e-16 89.0 58 79.3
VMungo0942G0003 Vigna mungo HOM05D004182 ORTHO05D007321 2.0e-16 89.0 58 79.3
Ca_24280_v3 Cicer arietinum L. HOM05D004182 ORTHO05D007321 2.6e-16 88.6 58 81.0
Psat0s9163g0080 Pisum sativum HOM05D004182 ORTHO05D007321 2.6e-16 88.6 58 81.0
arahy.Tifrunner.gnm1.ann1.73L6LP Arachis hypogaea HOM05D004182 ORTHO05D007321 3.4e-16 88.2 59 78.0
Psat5g118800 Pisum sativum HOM05D004182 ORTHO05D007321 3.4e-16 88.2 58 81.0
Gohir.1Z051066 Gossypium hirsutum HOM05D004182 ORTHO05D007321 9.9e-16 86.7 59 79.7
Lsat_1_v5_gn_0_47640 Lactuca sativa HOM05D004182 ORTHO05D007321 9.9e-16 86.7 59 81.4
Psat7g033600 Pisum sativum HOM05D004182 ORTHO05D007321 9.9e-16 86.7 59 79.7
EL10As10g23966 Beta vulgaris HOM05D004182 ORTHO05D007321 1.7e-15 85.9 59 78.0
Hma1.2p1_1418F.1_g282260 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.7e-15 85.9 61 77.0
Nn031s41606 Nelumbo nucifera HOM05D004182 ORTHO05D007321 2.9e-15 85.1 60 81.7
Gohir.A12G165450 Gossypium hirsutum HOM05D004182 ORTHO05D007321 8.4e-15 83.6 59 78.0
BolSC29t60554H Brassica oleracea HOM05D004182 ORTHO05D007321 1.1e-14 83.2 45 93.3
BolSC45t60917H Brassica oleracea HOM05D004182 ORTHO05D007321 1.1e-14 83.2 45 93.3
Psat0s2011g0080 Pisum sativum HOM05D004182 ORTHO05D007321 1.4e-14 82.8 57 77.2
BraSC25t45918Z Brassica rapa HOM05D004182 ORTHO05D007321 1.9e-14 82.4 42 97.6
Glyma.03G084500 Glycine max HOM05D004182 ORTHO05D007321 1.9e-14 82.4 71 67.6
BolSC44t60830H Brassica oleracea HOM05D004182 ORTHO05D007321 2.4e-14 82.0 45 91.1
Nn070s42382 Nelumbo nucifera HOM05D004182 ORTHO05D007321 5.4e-14 80.9 58 77.6
Sopen02g009080 Solanum pennellii HOM05D004182 ORTHO05D007321 7.1e-14 80.5 61 73.8
Atru.chr1.3411 Acer truncatum HOM05D008259 ORTHO05D007321 1.2e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.1MX66Y Arachis hypogaea HOM05D008259 ORTHO05D010449 1.2e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.2N2B18 Arachis hypogaea HOM05D008259 ORTHO05D010449 1.2e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.A6TYH4 Arachis hypogaea HOM05D001966 ORTHO05D010449 1.2e-13 79.7 37 100.0
arahy.Tifrunner.gnm1.ann1.EPN6WV Arachis hypogaea HOM05D001966 ORTHO05D010449 1.2e-13 79.7 37 100.0
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 1.2e-13 79.7 37 100.0
EL10As15g24132 Beta vulgaris HOM05D008259 ORTHO05D010449 1.2e-13 79.7 37 100.0
Hma1.2p1_0043F.1_g025830 Hydrangea macrophylla HOM05D004182 ORTHO05D007321 1.2e-13 79.7 60 68.3
SHI36541 Sapria himalayana HOM05D001966 ORTHO05D010449 1.2e-13 79.7 37 100.0
Hund28446 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund28585 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund28944 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund28949 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund28959 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29107 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29184 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29242 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29271 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29275 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29279 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29283 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29451 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29497 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29785 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund29912 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund30004 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund30064 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Hund30203 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.2e-13 79.7 37 100.0
Sopen02g002730 Solanum pennellii HOM05D004182 ORTHO05D007321 1.6e-13 79.3 57 73.7
BolSC49t61151H Brassica oleracea HOM05D004182 ORTHO05D007321 2.7e-13 78.6 46 91.3
arahy.Tifrunner.gnm1.ann1.096T0J Arachis hypogaea HOM05D004182 ORTHO05D007321 3.5e-13 78.2 99 48.5
arahy.Tifrunner.gnm1.ann1.CT1WFL Arachis hypogaea HOM05D008259 ORTHO05D010449 6.0e-13 77.4 36 100.0
arahy.Tifrunner.gnm1.ann1.F9I1DV Arachis hypogaea HOM05D008259 ORTHO05D010449 6.0e-13 77.4 36 100.0
Lj4g0021959 Lotus japonicus HOM05D008259 ORTHO05D010449 1.0e-12 76.6 37 97.3
arahy.Tifrunner.gnm1.ann1.K9UDI5 Arachis hypogaea HOM05D008259 ORTHO05D010449 1.3e-12 76.3 36 97.2
arahy.Tifrunner.gnm1.ann1.L1GII0 Arachis hypogaea HOM05D008259 ORTHO05D010449 3.0e-12 75.1 37 94.6
Gohir.D05G169433 Gossypium hirsutum HOM05D004182 ORTHO05D007321 3.0e-12 75.1 59 72.9
Gohir.D13G041550 Gossypium hirsutum HOM05D004182 ORTHO05D007321 3.0e-12 75.1 59 71.2
Gorai.007G250500 Gossypium raimondii HOM05D001966 ORTHO05D010449 5.1e-12 74.3 37 89.2
SHI36542 Sapria himalayana HOM05D004182 ORTHO05D007321 1.1e-11 73.2 41 90.2
Phvul.010G003500 Phaseolus vulgaris HOM05D004182 ORTHO05D007321 1.5e-11 72.8 62 64.5
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 4.3e-11 71.2 58 69.0
Glyma.09G133950 Glycine max HOM05D004182 ORTHO05D007321 5.6e-11 70.9 61 60.7
Sc03g0005670 Simmondsia chinensis HOM05D004182 ORTHO05D007321 5.6e-11 70.9 47 80.9
Sed0024115 Sechium edule HOM05D004182 ORTHO05D007321 1.3e-10 69.7 40 90.0
C09p40270 Brassica napus HOM05D004182 ORTHO05D007321 2.8e-10 68.6 60 66.7
arahy.Tifrunner.gnm1.ann1.GMF9U8 Arachis hypogaea HOM05D004182 ORTHO05D007321 3.6e-10 68.2 58 63.8
Gohir.D11G237220 Gossypium hirsutum HOM05D001966 ORTHO05D010449 8.1e-10 67.0 33 87.9
Phvul.007G166000 Phaseolus vulgaris HOM05D008259 ORTHO05D010449 1.1e-09 66.6 33 93.9
Sc14g0004760 Simmondsia chinensis HOM05D004182 ORTHO05D007321 1.1e-09 66.6 52 73.1
Sed0007203 Sechium edule HOM05D004182 ORTHO05D007321 2.4e-09 65.5 59 64.4
Sed0018388 Sechium edule HOM05D004182 ORTHO05D007321 2.4e-09 65.5 59 64.4
Sed0018833 Sechium edule HOM05D004182 ORTHO05D007321 2.4e-09 65.5 59 64.4
Sed0022676 Sechium edule HOM05D004182 ORTHO05D007321 2.4e-09 65.5 59 64.4
ECA247G0006 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.0e-09 64.7 49 71.4
arahy.Tifrunner.gnm1.ann1.5LT2YD Arachis hypogaea HOM05D000580 ORTHO05D007321 1.5e-08 62.8 55 60.0
arahy.Tifrunner.gnm1.ann1.YI1HYY Arachis hypogaea HOM05D008259 ORTHO05D010449 2.6e-08 62.0 28 100.0
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 9.9e-08 60.1 54 59.3
FAN26G2239 Fragaria x ananassa HOM05D004182 ORTHO05D010449 9.9e-08 60.1 36 77.8
CAN.G1119.15 Capsicum annuum HOM05D002978 ORTHO05D003339 1.7e-07 59.3 59 59.3
Sed0012210 Sechium edule HOM05D004182 ORTHO05D007321 1.1e-06 56.6 26 100.0
Cpa.g.sc76.14 Carica papaya HOM05D004182 ORTHO05D007321 4.2e-06 54.7 33 78.8
AT2G07706 Arabidopsis thaliana HOM05D020812 ORTHO05D023689 9.3e-06 53.5 27 92.6
CARHR282850 Cardamine hirsuta HOM05D020812 ORTHO05D020154 9.3e-06 53.5 27 92.6


User provided reference genes

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