Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027897 Solanum tuberosum HOM05D007024 ORTHO05D008865 1.2e-118 429.9 215 100.0
Sopen09g002060 Solanum pennellii HOM05D007024 ORTHO05D008865 1.9e-116 422.5 214 98.6
Solyc09g007190.3 Solanum lycopersicum HOM05D007024 ORTHO05D008865 1.2e-115 419.9 214 98.1
CAN.G350.48 Capsicum annuum HOM05D007024 ORTHO05D008865 1.3e-101 373.2 216 87.5
Nitab4.5_0000848g0140 Nicotiana tabacum HOM05D007024 ORTHO05D008865 6.5e-93 344.4 223 80.7
Nitab4.5_0010883g0010 Nicotiana tabacum HOM05D007024 ORTHO05D008865 5.7e-81 304.7 219 72.6
Peaxi162Scf01517g00138 Petunia axillaris HOM05D007024 ORTHO05D008865 1.6e-75 286.6 164 84.8
Oeu029107.1 Olea europaea HOM05D007024 ORTHO05D008865 8.0e-75 284.3 197 73.6
Dinv35695 Davidia involucrata HOM05D001458 ORTHO05D006787 3.7e-72 275.4 170 79.4
CSS0004845 Camellia sinensis var. sinensis HOM05D007024 ORTHO05D008865 2.7e-70 269.2 147 87.8
SGA_v2.0_scaffold94G28656 Striga asiatica HOM05D007024 ORTHO05D008865 4.5e-70 268.5 183 73.2
vmacro08688 Vaccinium macrocarpon HOM05D007024 ORTHO05D008865 1.3e-69 266.9 153 82.4
Lj1g0023744 Lotus japonicus HOM05D007024 ORTHO05D008865 2.9e-69 265.8 208 66.3
Duzib106G2062 Durio zibethinus HOM05D007024 ORTHO05D008865 1.5e-68 263.5 218 63.8
PGR004G2860 Punica granatum HOM05D007024 ORTHO05D008865 1.9e-68 263.1 173 74.6
TAR633G0628 Trochodendron aralioides HOM05D007024 ORTHO05D008865 2.5e-68 262.7 185 71.9
Cfa017486 Carpinus fangiana HOM05D007024 ORTHO05D008865 3.2e-68 262.3 160 78.1
CiPaw.09G183100 Carya illinoinensis HOM05D007024 ORTHO05D008865 2.7e-67 259.2 197 67.0
Migut.L01652 Erythranthe guttata HOM05D007024 ORTHO05D008865 8.0e-67 257.7 177 72.9
Phvul.001G173900 Phaseolus vulgaris HOM05D007024 ORTHO05D008865 8.0e-67 257.7 155 77.4
Gohir.A09G160700 Gossypium hirsutum HOM05D007024 ORTHO05D008865 1.0e-66 257.3 218 61.9
Ciclev10013683m.g Citrus clementina HOM05D007024 ORTHO05D008865 1.8e-66 256.5 221 62.0
Aqoxy4G03151 Aquilegia oxysepala HOM05D007024 ORTHO05D008865 3.0e-66 255.8 198 66.7
Glyma.19G177600 Glycine max HOM05D007024 ORTHO05D008865 5.2e-66 255.0 186 66.7
Potri.006G133100 Populus trichocarpa HOM05D007024 ORTHO05D008865 5.2e-66 255.0 198 66.7
RcHm_v2.0_Chr3g0468261 Rosa chinensis HOM05D007024 ORTHO05D008865 5.2e-66 255.0 195 65.1
unitig_746.g26783 Utricularia gibba HOM05D007024 ORTHO05D008865 5.2e-66 255.0 160 76.2
Thecc.05G052000 Theobroma cacao HOM05D007024 ORTHO05D008865 8.8e-66 254.2 216 63.4
VMungo1383G1891 Vigna mungo HOM05D007024 ORTHO05D008865 1.2e-65 253.8 155 76.1
GSVIVG01025554001 Vitis vinifera HOM05D007024 ORTHO05D008865 1.2e-65 253.8 216 61.6
HanXRQChr05g0129231 Helianthus annuus HOM05D007024 ORTHO05D008865 1.5e-65 253.4 161 77.0
Haze_20672 Corylus avellana HOM05D007024 ORTHO05D008865 2.0e-65 253.1 172 72.7
TPR.G39424 Trifolium pratense HOM05D007024 ORTHO05D008865 2.0e-65 253.1 203 64.0
arahy.Tifrunner.gnm1.ann1.4131RS Arachis hypogaea HOM05D007024 ORTHO05D008865 2.6e-65 252.7 205 63.9
Nn2g10613 Nelumbo nucifera HOM05D007024 ORTHO05D008865 2.6e-65 252.7 155 77.4
Gohir.D09G156400 Gossypium hirsutum HOM05D007024 ORTHO05D008865 3.4e-65 252.3 215 60.9
QL07p045588 Quercus lobata HOM05D007024 ORTHO05D008865 3.4e-65 252.3 222 61.7
Eucgr.K03198 Eucalyptus grandis HOM05D007024 ORTHO05D008865 4.4e-65 251.9 160 75.0
Lsat_1_v5_gn_2_109921 Lactuca sativa HOM05D007024 ORTHO05D008865 5.7e-65 251.5 224 61.6
PSO063G4670 Papaver somniferum HOM05D007024 ORTHO05D008865 5.7e-65 251.5 174 73.6
THA.LOC104805324 Tarenaya hassleriana HOM05D007024 ORTHO05D008865 5.7e-65 251.5 161 73.3
Ca_08817_v3 Cicer arietinum L. HOM05D007024 ORTHO05D008865 7.5e-65 251.1 191 65.4
FvH4_6g15080 Fragaria vesca HOM05D007024 ORTHO05D008865 9.8e-65 250.8 221 58.4
Cc06_g03440 Coffea canephora HOM05D007024 ORTHO05D008865 2.2e-64 249.6 138 85.5
MD12G1128400 Malus domestica HOM05D007024 ORTHO05D008865 2.2e-64 249.6 203 63.1
COL.COLO4_10283 Corchorus olitorius HOM05D007024 ORTHO05D008865 2.8e-64 249.2 154 77.3
PSO782G5617 Papaver somniferum HOM05D007024 ORTHO05D008865 2.8e-64 249.2 161 74.5
Psat3g045960 Pisum sativum HOM05D007024 ORTHO05D008865 4.9e-64 248.4 215 60.9
CsaV3_4G024400 Cucumis sativus L. HOM05D007024 ORTHO05D008865 6.3e-64 248.1 183 67.8
FAN02G0668 Fragaria x ananassa HOM05D007024 ORTHO05D008865 6.3e-64 248.1 219 60.7
Aa31LG5G22570 Aethionema arabicum HOM05D007024 ORTHO05D008865 1.1e-63 247.3 156 73.1
FAN09G4212 Fragaria x ananassa HOM05D007024 ORTHO05D008865 1.1e-63 247.3 167 71.3
Medtr7g100540 Medicago truncatula HOM05D007024 ORTHO05D008865 1.1e-63 247.3 213 61.0
ClCG04G008760 Citrullus lanatus HOM05D007024 ORTHO05D008865 1.4e-63 246.9 220 60.9
Sed0013795 Sechium edule HOM05D007024 ORTHO05D008865 1.4e-63 246.9 203 62.1
FAN14G4602 Fragaria x ananassa HOM05D007024 ORTHO05D007145 1.8e-63 246.5 146 78.1
Sc20g0004190 Simmondsia chinensis HOM05D007024 ORTHO05D008865 1.8e-63 246.5 161 74.5
Lj3A977T52 Lonicera japonica HOM05D007024 ORTHO05D008865 3.1e-63 245.7 169 72.2
Sabra06G0104600 Salix brachista HOM05D007024 ORTHO05D008865 3.1e-63 245.7 148 77.7
ECA238G1489 Erigeron canadensis HOM05D007024 ORTHO05D008865 4.1e-63 245.4 155 75.5
TWI74G0989 Tripterygium wilfordii HOM05D007024 ORTHO05D008865 7.0e-63 244.6 138 79.0
Atru.chr8.2534 Acer truncatum HOM05D007024 ORTHO05D008865 9.2e-63 244.2 197 65.0
Lalb_Chr20g0112901 Lupinus albus HOM05D007024 ORTHO05D008865 9.2e-63 244.2 221 58.8
MBI18_g34970_MAGBIO Magnolia biondii HOM05D007024 ORTHO05D008865 1.2e-62 243.8 187 66.3
Gorai.006G177900 Gossypium raimondii HOM05D007024 ORTHO05D008865 2.7e-62 242.7 218 59.2
Actinidia05279 Actinidia chinensis HOM05D007024 ORTHO05D008865 1.5e-60 236.9 126 88.9
AL4G33620 Arabidopsis lyrata HOM05D007024 ORTHO05D008865 1.5e-60 236.9 216 57.4
CARHR132350 Cardamine hirsuta HOM05D007024 ORTHO05D008865 4.3e-60 235.3 215 57.2
Thhalv10017137m.g Eutrema salsugineum HOM05D007024 ORTHO05D008865 9.5e-60 234.2 215 56.7
Hund12062 Selenicereus undatus HOM05D007024 ORTHO05D008865 1.2e-59 233.8 218 56.4
Sp4g19560 Schrenkiella parvula HOM05D007024 ORTHO05D008865 3.6e-59 232.3 214 57.5
C04p10750 Brassica napus HOM05D007024 ORTHO05D008865 4.7e-59 231.9 215 56.7
BolC4t22670H Brassica oleracea HOM05D007024 ORTHO05D008865 4.7e-59 231.9 215 56.7
BcaB02g09297 Brassica carinata HOM05D007024 ORTHO05D008865 6.1e-59 231.5 217 54.8
BcaC02g11844 Brassica carinata HOM05D007024 ORTHO05D008865 6.1e-59 231.5 215 56.7
AT2G37240 Arabidopsis thaliana HOM05D007024 ORTHO05D008865 8.0e-59 231.1 216 56.9
Os03g0284600 Oryza sativa ssp. japonica HOM05D007024 ORTHO05D008865 1.0e-58 230.7 139 76.3
A05p08660 Brassica napus HOM05D007024 ORTHO05D008865 1.8e-58 229.9 215 55.8
BraA05t19834Z Brassica rapa HOM05D007024 ORTHO05D008865 1.8e-58 229.9 215 55.8
Carub.0004s1915 Capsella rubella HOM05D007024 ORTHO05D008865 1.8e-58 229.9 177 63.3
Zm00001eb013030 Zea mays HOM05D007024 ORTHO05D008865 4.4e-57 225.3 155 71.6
HPP92_003601 Vanilla planifolia HOM05D007024 ORTHO05D008865 1.7e-56 223.4 145 71.0
ATR0582G226 Amborella trichopoda HOM05D007024 ORTHO05D008865 2.9e-56 222.6 170 65.9
Prupe.6G244000 Prunus persica HOM05D007024 ORTHO05D008865 3.9e-53 212.2 223 52.9
Manes.08G001700 Manihot esculenta HOM05D007024 ORTHO05D008865 3.6e-51 205.7 148 70.3
CDE04G0730 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 2.6e-49 199.5 229 48.0
AagrBONN_evm.TU.Sc2ySwM_344.3825 Anthoceros agrestis HOM05D007024 ORTHO05D008865 3.4e-49 199.1 152 63.2
CANSAT80G1842 Cannabis sativa HOM05D007024 ORTHO05D008865 9.8e-49 197.6 178 57.9
Manes.09G070900 Manihot esculenta HOM05D007024 ORTHO05D008865 1.4e-47 193.7 190 57.4
SMO353G0397 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 4.1e-47 192.2 134 63.4
PGSC0003DMG400031729 Solanum tuberosum HOM05D007024 ORTHO05D008865 6.6e-45 184.9 88 100.0
Cpa.g.sc45.24 Carica papaya HOM05D007024 ORTHO05D008865 4.7e-43 178.7 105 79.0
Mapoly0154s0013 Marchantia polymorpha HOM05D007024 ORTHO05D008865 2.1e-38 163.3 140 57.1
CBR_g9017 Chara braunii HOM05D001161 ORTHO05D000497 8.6e-37 157.9 139 50.4
Ah.15g092040 Amaranthus hybridus HOM05D006367 ORTHO05D007942 2.5e-36 156.4 90 78.9
MELO3C003072.2 Cucumis melo HOM05D007024 ORTHO05D008865 3.3e-36 156.0 191 50.3
CiPaw.09G182200 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.6e-35 153.7 88 80.7
arahy.Tifrunner.gnm1.ann1.GN5EPC Arachis hypogaea HOM05D007024 ORTHO05D008865 2.1e-35 153.3 92 75.0
Glyma.03G176900 Glycine max HOM05D007024 ORTHO05D008865 5.2e-34 148.7 90 74.4
Hma1.2p1_0111F.1_g053680 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 5.1e-29 132.1 78 80.8
COL.COLO4_27104 Corchorus olitorius HOM05D007024 ORTHO05D008865 1.1e-26 124.4 71 81.7
SEGI_25621 Sequoiadendron giganteum HOM05D007024 ORTHO05D008865 2.1e-22 110.2 78 69.2
AUR62040525 Chenopodium quinoa HOM05D006367 ORTHO05D007942 4.8e-19 99.0 58 77.6
SalBow5G1886 Salvia bowleyana HOM05D004917 ORTHO05D005954 1.5e-17 94.0 177 32.8
AT5G65840 Arabidopsis thaliana HOM05D004917 ORTHO05D005954 7.6e-17 91.7 128 40.6
AL8G43550 Arabidopsis lyrata HOM05D004917 ORTHO05D005954 9.9e-17 91.3 184 33.2
EL10Ac7g17324 Beta vulgaris HOM05D006367 ORTHO05D007942 9.9e-17 91.3 109 49.5
PGSC0003DMG400003322 Solanum tuberosum HOM05D004917 ORTHO05D005954 9.9e-17 91.3 186 35.5
Thhalv10004770m.g Eutrema salsugineum HOM05D004917 ORTHO05D005954 1.7e-16 90.5 187 34.8
Carub.0008s2673 Capsella rubella HOM05D004917 ORTHO05D005954 2.2e-16 90.1 158 36.1
CAN.G775.1 Capsicum annuum HOM05D004917 ORTHO05D005954 2.2e-16 90.1 172 32.6
Sopen02g014680 Solanum pennellii HOM05D004917 ORTHO05D005954 1.4e-15 87.4 174 32.8
CANSAT01G2436 Cannabis sativa HOM05D004917 ORTHO05D005954 1.9e-15 87.0 123 39.0
BraA09t36573Z Brassica rapa HOM05D004917 ORTHO05D005954 2.4e-15 86.7 140 39.3
COL.COLO4_11616 Corchorus olitorius HOM05D004917 ORTHO05D005954 2.4e-15 86.7 156 37.2
CARHR279840 Cardamine hirsuta HOM05D004917 ORTHO05D005954 3.2e-15 86.3 198 33.3
Dinv26959 Davidia involucrata HOM05D004917 ORTHO05D005954 3.2e-15 86.3 128 36.7
Migut.L00432 Erythranthe guttata HOM05D004917 ORTHO05D005954 3.2e-15 86.3 131 36.6
Hma1.2p1_0424F.1_g150480 Hydrangea macrophylla HOM05D004917 ORTHO05D005954 4.2e-15 85.9 171 32.7
Sp2g28930 Schrenkiella parvula HOM05D004917 ORTHO05D005954 4.2e-15 85.9 197 32.0
Gohir.D10G098900 Gossypium hirsutum HOM05D004917 ORTHO05D005954 5.4e-15 85.5 196 33.2
A09p09210 Brassica napus HOM05D004917 ORTHO05D005954 7.1e-15 85.1 140 39.3
AUR62004032 Chenopodium quinoa HOM05D004917 ORTHO05D005954 7.1e-15 85.1 128 38.3
vmacro18012 Vaccinium macrocarpon HOM05D004917 ORTHO05D005954 7.1e-15 85.1 136 36.8
Aqoxy1G00260 Aquilegia oxysepala HOM05D004917 ORTHO05D005954 9.3e-15 84.7 127 37.8
BcaC04g23243 Brassica carinata HOM05D004917 ORTHO05D005954 9.3e-15 84.7 140 39.3
BolC9t53970H Brassica oleracea HOM05D004917 ORTHO05D005954 9.3e-15 84.7 140 39.3
Gorai.011G108500 Gossypium raimondii HOM05D004917 ORTHO05D005954 9.3e-15 84.7 196 33.2
unitig_37.g11996 Utricularia gibba HOM05D004917 ORTHO05D005954 9.3e-15 84.7 133 36.1
BcaB04g20033 Brassica carinata HOM05D004917 ORTHO05D005954 1.6e-14 84.0 184 35.3
BcaB04g20036 Brassica carinata HOM05D004917 ORTHO05D005954 1.6e-14 84.0 184 35.3
Rhsim08G0090300 Rhododendron simsii HOM05D004917 ORTHO05D005954 1.6e-14 84.0 184 33.7
EL10Ac6g15593 Beta vulgaris HOM05D004917 ORTHO05D005954 2.1e-14 83.6 206 31.6
Gohir.A10G089200 Gossypium hirsutum HOM05D004917 ORTHO05D005954 2.1e-14 83.6 196 32.7
PSO170G3322 Papaver somniferum HOM05D004917 ORTHO05D005954 2.7e-14 83.2 144 34.0
QL06p038930 Quercus lobata HOM05D004917 ORTHO05D005954 3.5e-14 82.8 203 33.0
AUR62007540 Chenopodium quinoa HOM05D004917 ORTHO05D005954 4.6e-14 82.4 127 37.8
PSO017G2694 Papaver somniferum HOM05D004917 ORTHO05D005954 4.6e-14 82.4 127 36.2
Migut.L00430 Erythranthe guttata HOM05D004917 ORTHO05D005954 6.0e-14 82.0 155 31.6
Thecc.01G076300 Theobroma cacao HOM05D004917 ORTHO05D005954 7.9e-14 81.6 123 39.0
Aa31LG1G16240 Aethionema arabicum HOM05D006600 ORTHO05D008446 1.0e-13 81.3 139 35.3
Actinidia16409 Actinidia chinensis HOM05D004917 ORTHO05D005954 1.3e-13 80.9 196 32.7
CiPaw.09G182700 Carya illinoinensis HOM05D007024 ORTHO05D008865 1.3e-13 80.9 95 46.3
Pp3c27_7100 Physcomitrium patens HOM05D004917 ORTHO05D005954 1.8e-13 80.5 176 31.8
PSO170G4503 Papaver somniferum HOM05D004917 ORTHO05D005954 2.3e-13 80.1 115 38.3
Cfa004388 Carpinus fangiana HOM05D004917 ORTHO05D005954 3.9e-13 79.3 122 38.5
Zm00001eb110150 Zea mays HOM05D007024 ORTHO05D008865 5.1e-13 79.0 62 61.3
Cpa.g.sc673.2 Carica papaya HOM05D004917 ORTHO05D005954 6.7e-13 78.6 131 35.1
Ah.03g140710 Amaranthus hybridus HOM05D004917 ORTHO05D005954 1.1e-12 77.8 166 36.1
C09p10750 Brassica napus HOM05D004917 ORTHO05D005954 1.1e-12 77.8 180 32.2
CDE07G1737 Ceratophyllum demersum HOM05D007024 ORTHO05D008865 1.1e-12 77.8 69 62.3
TWI74G1062 Tripterygium wilfordii HOM05D004917 ORTHO05D005954 1.9e-12 77.0 167 31.1
ATR0739G130 Amborella trichopoda HOM05D004917 ORTHO05D005954 2.5e-12 76.6 124 34.7
MD02G1189600 Malus domestica HOM05D004917 ORTHO05D005954 2.5e-12 76.6 197 31.5
SMO353G0028 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.5e-12 76.6 55 60.0
PGR102G2131 Punica granatum HOM05D004917 ORTHO05D005954 3.3e-12 76.3 115 40.0
SMO171G0126 Selaginella moellendorffii HOM05D007024 ORTHO05D008865 2.8e-11 73.2 94 44.7
C06p27120 Brassica napus HOM05D007024 ORTHO05D008865 6.2e-11 72.0 110 39.1
BcaC08g45103 Brassica carinata HOM05D007024 ORTHO05D008865 2.4e-10 70.1 120 37.5
AagrBONN_evm.TU.Sc2ySwM_368.1530 Anthoceros agrestis HOM05D004917 ORTHO05D005954 3.1e-10 69.7 161 35.4
Os03g0729300 Oryza sativa ssp. japonica HOM05D004917 ORTHO05D005954 4.0e-10 69.3 118 36.4
BolC6t37885H Brassica oleracea HOM05D007024 ORTHO05D008865 6.9e-10 68.6 111 38.7
Haze_15025 Corylus avellana HOM05D004917 ORTHO05D005954 2.6e-09 66.6 126 35.7
Hma1.2p1_0111F.1_g053690 Hydrangea macrophylla HOM05D007024 ORTHO05D008865 2.6e-09 66.6 30 93.3
CSS0005558 Camellia sinensis var. sinensis HOM05D004917 ORTHO05D005954 8.4e-08 61.6 145 29.7
QL06p038910 Quercus lobata HOM05D004917 ORTHO05D005954 1.9e-07 60.5 84 44.0
QL02p069743 Quercus lobata HOM05D004917 ORTHO05D005954 2.4e-07 60.1 92 40.2
Nitab4.5_0002309g0040 Nicotiana tabacum HOM05D006847 ORTHO05D008685 9.3e-07 58.2 130 30.8
CiPaw.06G095800 Carya illinoinensis HOM05D006847 ORTHO05D008685 1.6e-06 57.4 116 31.9
Nitab4.5_0000259g0050 Nicotiana tabacum HOM05D006847 ORTHO05D008685 1.6e-06 57.4 130 30.8
PGSC0003DMG400001803 Solanum tuberosum HOM05D006847 ORTHO05D008685 3.5e-06 56.2 130 30.0
Sopen01g032850 Solanum pennellii HOM05D006847 ORTHO05D008685 4.6e-06 55.8 130 29.2
AagrBONN_evm.TU.Sc2ySwM_368.2780 Anthoceros agrestis HOM05D006847 ORTHO05D008685 6.0e-06 55.5 80 35.0


User provided reference genes

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