Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027887 Solanum tuberosum HOM05D003803 ORTHO05D004456 6.0e-25 116.7 59 100.0
Nitab4.5_0009541g0010 Nicotiana tabacum HOM05D003803 ORTHO05D004456 2.1e-17 91.7 55 85.5
Nitab4.5_0000343g0290 Nicotiana tabacum HOM05D003803 ORTHO05D004456 6.1e-17 90.1 50 88.0
Solyc07g041980.3 Solanum lycopersicum HOM05D003803 ORTHO05D004456 6.7e-16 86.7 53 84.9
Sopen07g021560 Solanum pennellii HOM05D003803 ORTHO05D004456 6.7e-16 86.7 53 84.9
Haze_26022 Corylus avellana HOM05D003803 ORTHO05D004456 8.8e-16 86.3 53 77.4
CAN.G595.3 Capsicum annuum HOM05D003803 ORTHO05D004456 3.3e-15 84.3 49 83.7
Peaxi162Scf00348g00817 Petunia axillaris HOM05D003803 ORTHO05D004456 7.4e-15 83.2 44 86.4
MD02G1093600 Malus domestica HOM05D003803 ORTHO05D004456 1.7e-14 82.0 48 81.2
Sabra06G0110200 Salix brachista HOM05D003803 ORTHO05D004456 2.2e-14 81.6 50 78.0
Cc06_g12240 Coffea canephora HOM05D003803 ORTHO05D004456 3.7e-14 80.9 47 83.0
TWI34G0129 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 3.7e-14 80.9 45 82.2
Potri.006G141100 Populus trichocarpa HOM05D003803 ORTHO05D004456 4.8e-14 80.5 50 78.0
Manes.16G094800 Manihot esculenta HOM05D003803 ORTHO05D004456 6.3e-14 80.1 46 80.4
CiPaw.04G142500 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.1e-13 79.3 47 76.6
vmacro06347 Vaccinium macrocarpon HOM05D003803 ORTHO05D004456 1.1e-13 79.3 52 73.1
CiPaw.03G205300 Carya illinoinensis HOM05D003803 ORTHO05D004456 1.4e-13 79.0 48 79.2
Prupe.7G197000 Prunus persica HOM05D003803 ORTHO05D004456 1.4e-13 79.0 48 79.2
MD15G1218900 Malus domestica HOM05D003803 ORTHO05D004456 1.8e-13 78.6 47 80.9
Dinv42400 Davidia involucrata HOM05D003803 ORTHO05D004456 2.4e-13 78.2 48 75.0
Migut.L01571 Erythranthe guttata HOM05D003803 ORTHO05D004456 2.4e-13 78.2 48 75.0
Rhsim05G0007000 Rhododendron simsii HOM05D003803 ORTHO05D004456 2.4e-13 78.2 45 80.0
Atru.chr7.1717 Acer truncatum HOM05D003803 ORTHO05D004456 4.1e-13 77.4 48 75.0
Nn8g38618 Nelumbo nucifera HOM05D003803 ORTHO05D004456 4.1e-13 77.4 43 81.4
Thhalv10014548m.g Eutrema salsugineum HOM05D003803 ORTHO05D004456 5.3e-13 77.0 53 75.5
COL.COLO4_18088 Corchorus olitorius HOM05D003803 ORTHO05D004456 9.1e-13 76.3 47 78.7
Dinv25550 Davidia involucrata HOM05D003803 ORTHO05D004456 9.1e-13 76.3 48 75.0
Duzib168G2099 Durio zibethinus HOM05D003803 ORTHO05D004456 9.1e-13 76.3 48 75.0
GSVIVG01015067001 Vitis vinifera HOM05D003803 ORTHO05D004456 9.1e-13 76.3 44 81.8
Eucgr.C03259 Eucalyptus grandis HOM05D003803 ORTHO05D004456 1.2e-12 75.9 48 77.1
CANSAT56G4286 Cannabis sativa HOM05D003803 ORTHO05D004456 1.5e-12 75.5 43 81.4
TWI63G1012 Tripterygium wilfordii HOM05D003803 ORTHO05D004456 1.5e-12 75.5 48 75.0
unitig_85.g27251 Utricularia gibba HOM05D003803 ORTHO05D004456 1.5e-12 75.5 49 69.4
Ciclev10010564m.g Citrus clementina HOM05D003803 ORTHO05D004456 2.6e-12 74.7 48 72.9
FvH4_1g08850 Fragaria vesca HOM05D003803 ORTHO05D004456 2.6e-12 74.7 40 85.0
FAN19G2912 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-12 74.7 40 85.0
FAN23G2205 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-12 74.7 40 85.0
FAN26G0190 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-12 74.7 40 85.0
FAN28G2731 Fragaria x ananassa HOM05D003803 ORTHO05D004456 2.6e-12 74.7 40 85.0
RcHm_v2.0_Chr2g0095321 Rosa chinensis HOM05D003803 ORTHO05D004456 2.6e-12 74.7 40 85.0
Cpa.g.sc28.25 Carica papaya HOM05D003803 ORTHO05D004456 3.4e-12 74.3 45 75.6
FAN26G2608 Fragaria x ananassa HOM05D003803 ORTHO05D004456 3.4e-12 74.3 43 81.4
Actinidia39653 Actinidia chinensis HOM05D003803 ORTHO05D004456 4.5e-12 73.9 49 71.4
Ca_09305_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 4.5e-12 73.9 42 78.6
Sed0026577 Sechium edule HOM05D003803 ORTHO05D004456 4.5e-12 73.9 55 65.5
ClCG03G015020 Citrullus lanatus HOM05D003803 ORTHO05D004456 5.9e-12 73.6 42 78.6
Duzib187G1358 Durio zibethinus HOM05D003803 ORTHO05D004456 5.9e-12 73.6 48 75.0
TAR636G1611 Trochodendron aralioides HOM05D003803 ORTHO05D004456 5.9e-12 73.6 49 71.4
Lalb_Chr13g0299401 Lupinus albus HOM05D003803 ORTHO05D004456 7.7e-12 73.2 43 76.7
Thecc.09G075700 Theobroma cacao HOM05D003803 ORTHO05D004456 7.7e-12 73.2 48 75.0
unitig_699.g19272 Utricularia gibba HOM05D003803 ORTHO05D004456 7.7e-12 73.2 46 73.9
BcaB01g04775 Brassica carinata HOM05D003803 ORTHO05D004456 1.0e-11 72.8 41 82.9
CARHR192170 Cardamine hirsuta HOM05D003803 ORTHO05D004456 1.0e-11 72.8 37 89.2
Sp6g23850 Schrenkiella parvula HOM05D003803 ORTHO05D004456 1.0e-11 72.8 44 77.3
THA.LOC104810996 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.0e-11 72.8 47 76.6
Carub.0006s1897 Capsella rubella HOM05D003803 ORTHO05D004456 1.3e-11 72.4 49 73.5
Actinidia30227 Actinidia chinensis HOM05D003803 ORTHO05D004456 1.7e-11 72.0 49 71.4
Hma1.2p1_0169F.1_g074460 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.7e-11 72.0 48 70.8
Lalb_Chr07g0181211 Lupinus albus HOM05D003803 ORTHO05D004456 1.7e-11 72.0 43 72.1
SalBow5G3024 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.7e-11 72.0 48 68.8
SalBow5G4531 Salvia bowleyana HOM05D003803 ORTHO05D004456 1.7e-11 72.0 48 68.8
Duzib150G1133 Durio zibethinus HOM05D003803 ORTHO05D004456 2.2e-11 71.6 48 68.8
Manes.03G041000 Manihot esculenta HOM05D003803 ORTHO05D004456 2.9e-11 71.2 53 64.2
Phvul.003G130200 Phaseolus vulgaris HOM05D003803 ORTHO05D004456 2.9e-11 71.2 43 74.4
Potri.018G062400 Populus trichocarpa HOM05D003803 ORTHO05D004456 2.9e-11 71.2 46 76.1
BcaC03g13781 Brassica carinata HOM05D003803 ORTHO05D004456 3.8e-11 70.9 59 64.4
Glyma.17G048600 Glycine max HOM05D003803 ORTHO05D004456 3.8e-11 70.9 43 74.4
Gohir.A13G190300 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.8e-11 70.9 50 66.0
Gohir.D13G196350 Gossypium hirsutum HOM05D003803 ORTHO05D004456 3.8e-11 70.9 50 66.0
Gorai.013G223800 Gossypium raimondii HOM05D003803 ORTHO05D004456 3.8e-11 70.9 50 66.0
VMungo1215G1786 Vigna mungo HOM05D003803 ORTHO05D004456 3.8e-11 70.9 43 74.4
A02p06390 Brassica napus HOM05D003803 ORTHO05D004456 5.0e-11 70.5 48 77.1
BraA02t05584Z Brassica rapa HOM05D003803 ORTHO05D004456 5.0e-11 70.5 48 77.1
Sed0024871 Sechium edule HOM05D003803 ORTHO05D004456 5.0e-11 70.5 42 73.8
A03p10180 Brassica napus HOM05D003803 ORTHO05D004456 6.5e-11 70.1 37 86.5
BolC2t07055H Brassica oleracea HOM05D003803 ORTHO05D004456 6.5e-11 70.1 53 71.7
BraA03t10328Z Brassica rapa HOM05D003803 ORTHO05D004456 6.5e-11 70.1 37 86.5
Gorai.001G015700 Gossypium raimondii HOM05D003803 ORTHO05D004456 6.5e-11 70.1 47 76.6
PGR044G0570 Punica granatum HOM05D003803 ORTHO05D004456 6.5e-11 70.1 46 69.6
MSTRG.26474 Avicennia marina HOM05D003803 ORTHO05D004456 1.1e-10 69.3 48 70.8
BcaB05g22827 Brassica carinata HOM05D003803 ORTHO05D004456 1.1e-10 69.3 44 75.0
MELO3C015527.2 Cucumis melo HOM05D003803 ORTHO05D004456 1.1e-10 69.3 42 73.8
CsaV3_1G041120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.1e-10 69.3 42 73.8
Hma1.2p1_0179F.1_g079480 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 1.1e-10 69.3 45 68.9
Hund26046 Selenicereus undatus HOM05D003803 ORTHO05D004456 1.1e-10 69.3 51 62.7
THA.LOC104799616 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.1e-10 69.3 46 73.9
BraA10t44015Z Brassica rapa HOM05D003803 ORTHO05D004456 1.4e-10 68.9 60 60.0
MSTRG.10505 Avicennia marina HOM05D003803 ORTHO05D004456 2.5e-10 68.2 47 74.5
C03p11700 Brassica napus HOM05D003803 ORTHO05D004456 3.2e-10 67.8 52 69.2
BolC3t13641H Brassica oleracea HOM05D003803 ORTHO05D004456 3.2e-10 67.8 52 69.2
Sed0004681 Sechium edule HOM05D003803 ORTHO05D004456 3.2e-10 67.8 42 73.8
A10p19380 Brassica napus HOM05D003803 ORTHO05D004456 4.2e-10 67.4 58 60.3
Rhsim03G0227100 Rhododendron simsii HOM05D003803 ORTHO05D004456 4.2e-10 67.4 48 70.8
Gohir.A06G077000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.5e-10 67.0 48 68.8
Gohir.A07G015200 Gossypium hirsutum HOM05D003803 ORTHO05D004456 5.5e-10 67.0 47 74.5
Gorai.010G088900 Gossypium raimondii HOM05D003803 ORTHO05D004456 5.5e-10 67.0 48 68.8
Medtr2g042200 Medicago truncatula HOM05D003803 ORTHO05D004456 7.2e-10 66.6 48 64.6
TAR624G1266 Trochodendron aralioides HOM05D003803 ORTHO05D004456 7.2e-10 66.6 48 68.8
Nn6g35693 Nelumbo nucifera HOM05D003803 ORTHO05D004456 9.4e-10 66.2 41 73.2
AT5G20635 Arabidopsis thaliana HOM05D003803 ORTHO05D004456 1.2e-09 65.9 33 90.9
Gohir.D06G076000 Gossypium hirsutum HOM05D003803 ORTHO05D004456 2.7e-09 64.7 48 66.7
Oeu060649.1 Olea europaea HOM05D003803 ORTHO05D004456 2.7e-09 64.7 46 69.6
QL11p000998 Quercus lobata HOM05D003803 ORTHO05D004456 3.6e-09 64.3 33 90.9
AL6G32180 Arabidopsis lyrata HOM05D003803 ORTHO05D004456 4.7e-09 63.9 33 87.9
Oeu007415.1 Olea europaea HOM05D003803 ORTHO05D004456 4.7e-09 63.9 44 72.7
Psat1g134600 Pisum sativum HOM05D003803 ORTHO05D004456 6.1e-09 63.5 48 62.5
SGA_v2.0_scaffold21G09503 Striga asiatica HOM05D003803 ORTHO05D004456 1.0e-08 62.8 48 64.6
Aqoxy7G01029 Aquilegia oxysepala HOM05D003803 ORTHO05D004456 2.3e-08 61.6 43 65.1
TPR.G8075 Trifolium pratense HOM05D003803 ORTHO05D004456 2.3e-08 61.6 48 58.3
MELO3C004657.2 Cucumis melo HOM05D003803 ORTHO05D004456 3.0e-08 61.2 32 84.4
arahy.Tifrunner.gnm1.ann1.1Y26QK Arachis hypogaea HOM05D003803 ORTHO05D004456 5.1e-08 60.5 47 59.6
arahy.Tifrunner.gnm1.ann1.KPGD7J Arachis hypogaea HOM05D003803 ORTHO05D004456 5.1e-08 60.5 47 59.6
Ca_02184_v3 Cicer arietinum L. HOM05D003803 ORTHO05D004456 8.8e-08 59.7 48 58.3
CsaV3_2G001120 Cucumis sativus L. HOM05D003803 ORTHO05D004456 1.1e-07 59.3 53 58.5
Lj4g0012858 Lotus japonicus HOM05D003803 ORTHO05D004456 1.1e-07 59.3 32 78.1
THA.LOC104808881 Tarenaya hassleriana HOM05D003803 ORTHO05D004456 1.5e-07 58.9 55 54.5
Oeu000278.1 Olea europaea HOM05D003803 ORTHO05D004456 2.0e-07 58.5 44 63.6
Hma1.2p1_0291F.1_g114940 Hydrangea macrophylla HOM05D003803 ORTHO05D004456 2.6e-07 58.2 41 68.3
Sc15g0000470 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.4e-07 57.4 37 70.3
Sc18g0002620 Simmondsia chinensis HOM05D003803 ORTHO05D004456 4.4e-07 57.4 50 66.0
CSS0005199 Camellia sinensis var. sinensis HOM05D003803 ORTHO05D004456 5.7e-07 57.0 40 62.5
Glyma.09G070100 Glycine max HOM05D003803 ORTHO05D004456 5.7e-07 57.0 44 65.9
arahy.Tifrunner.gnm1.ann1.AJ3133 Arachis hypogaea HOM05D003803 ORTHO05D004456 7.4e-07 56.6 47 61.7
arahy.Tifrunner.gnm1.ann1.TX00RK Arachis hypogaea HOM05D003803 ORTHO05D004456 7.4e-07 56.6 47 61.7
Lj6g0024210 Lotus japonicus HOM05D003803 ORTHO05D004456 9.7e-07 56.2 43 65.1
Glyma.15G178100 Glycine max HOM05D003803 ORTHO05D004456 1.3e-06 55.8 52 55.8
Medtr4g125015 Medicago truncatula HOM05D003803 ORTHO05D004456 1.3e-06 55.8 27 92.6
BcaB08g36515 Brassica carinata HOM05D003803 ORTHO05D004456 1.7e-06 55.5 29 86.2
ClCG11G001400 Citrullus lanatus HOM05D003803 ORTHO05D004456 1.7e-06 55.5 34 76.5
CDE05G2490 Ceratophyllum demersum HOM05D003803 ORTHO05D004456 2.8e-06 54.7 39 61.5
Glyma.13G110900 Glycine max HOM05D003803 ORTHO05D004456 2.8e-06 54.7 32 78.1
Psat4g018440 Pisum sativum HOM05D003803 ORTHO05D004456 4.8e-06 53.9 28 85.7
Actinidia29937 Actinidia chinensis HOM05D003803 ORTHO05D004456 8.2e-06 53.1 26 92.3
PSO421G0234 Papaver somniferum HOM05D003803 ORTHO05D004456 8.2e-06 53.1 45 62.2


User provided reference genes

Program Settings