Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027563 Solanum tuberosum HOM05D001663 ORTHO05D005717 2.1e-277 958.4 484 100.0
Solyc04g072440.4 Solanum lycopersicum HOM05D001663 ORTHO05D005717 3.9e-271 937.6 484 97.5
Sopen04g028600 Solanum pennellii HOM05D001663 ORTHO05D005717 8.7e-271 936.4 484 97.3
CAN.G617.5 Capsicum annuum HOM05D001663 ORTHO05D005717 1.3e-261 906.0 484 93.0
Nitab4.5_0001915g0140 Nicotiana tabacum HOM05D001663 ORTHO05D005717 1.1e-254 882.9 480 92.1
Nitab4.5_0004952g0050 Nicotiana tabacum HOM05D001663 ORTHO05D005717 2.2e-253 878.6 476 92.2
Peaxi162Scf00756g00434 Petunia axillaris HOM05D001663 ORTHO05D005717 5.2e-223 777.7 468 84.2
Dinv44724 Davidia involucrata HOM05D001663 ORTHO05D005717 1.7e-213 746.1 485 78.1
Ciclev10001001m.g Citrus clementina HOM05D001663 ORTHO05D005717 1.3e-205 719.9 485 74.4
Rhsim07G0199300 Rhododendron simsii HOM05D001663 ORTHO05D005717 1.3e-205 719.9 487 75.4
GSVIVG01008963001 Vitis vinifera HOM05D001663 ORTHO05D005717 4.9e-205 718.0 485 74.6
vmacro04774 Vaccinium macrocarpon HOM05D001663 ORTHO05D005717 7.0e-204 714.1 521 70.8
CSS0006833 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 3.5e-203 711.8 486 75.1
RhsimUnG0073000 Rhododendron simsii HOM05D001663 ORTHO05D005717 7.8e-203 710.7 487 74.9
Migut.C00211 Erythranthe guttata HOM05D001663 ORTHO05D005717 5.0e-202 708.0 484 74.8
COL.COLO4_16510 Corchorus olitorius HOM05D001663 ORTHO05D005717 3.6e-200 701.8 485 72.8
Lj1g0004140 Lotus japonicus HOM05D001663 ORTHO05D005717 1.1e-199 700.3 485 73.4
Prupe.1G508500 Prunus persica HOM05D001663 ORTHO05D005717 3.1e-199 698.7 485 72.6
TAR376G0684 Trochodendron aralioides HOM05D001663 ORTHO05D005717 3.1e-199 698.7 484 72.9
Cc10_g06030 Coffea canephora HOM05D001663 ORTHO05D005717 5.2e-199 698.0 486 72.4
Manes.18G101600 Manihot esculenta HOM05D001663 ORTHO05D005717 8.9e-199 697.2 485 71.8
FvH4_5g38340 Fragaria vesca HOM05D001663 ORTHO05D005717 2.0e-198 696.0 482 72.6
Ca_26536_v3 Cicer arietinum L. HOM05D001663 ORTHO05D005717 9.8e-198 693.7 485 72.6
FAN18G1299 Fragaria x ananassa HOM05D001663 ORTHO05D005717 4.9e-197 691.4 481 72.3
Hma1.2p1_0529F.1_g173150 Hydrangea macrophylla HOM05D001663 ORTHO05D005717 4.9e-197 691.4 487 73.3
MSTRG.24955 Avicennia marina HOM05D001663 ORTHO05D005717 1.9e-196 689.5 484 73.3
Lalb_Chr10g0102081 Lupinus albus HOM05D001663 ORTHO05D005717 1.9e-196 689.5 485 72.2
FAN08G2783 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.2e-196 688.7 481 72.1
Medtr5g061040 Medicago truncatula HOM05D001663 ORTHO05D005717 9.2e-196 687.2 481 72.3
TPR.G30426 Trifolium pratense HOM05D001663 ORTHO05D005717 9.2e-196 687.2 485 72.8
Nn5g28968 Nelumbo nucifera HOM05D001663 ORTHO05D005717 3.5e-195 685.3 485 70.9
Phvul.008G169200 Phaseolus vulgaris HOM05D001663 ORTHO05D005717 3.5e-195 685.3 485 72.4
Gohir.D05G269900 Gossypium hirsutum HOM05D001663 ORTHO05D005717 7.8e-195 684.1 485 70.9
HanXRQChr05g0162261 Helianthus annuus HOM05D001663 ORTHO05D005717 7.8e-195 684.1 485 73.0
Thecc.08G114700 Theobroma cacao HOM05D001663 ORTHO05D005717 7.8e-195 684.1 485 70.9
Gorai.009G282600 Gossypium raimondii HOM05D001663 ORTHO05D005717 1.0e-194 683.7 485 70.9
Eucgr.H00930 Eucalyptus grandis HOM05D001663 ORTHO05D005717 1.7e-194 682.9 485 70.5
TWI56G1202 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 1.7e-194 682.9 485 70.3
Duzib041G0602 Durio zibethinus HOM05D001663 ORTHO05D005717 6.6e-194 681.0 485 69.9
Lalb_Chr04g0253241 Lupinus albus HOM05D001663 ORTHO05D005717 6.6e-194 681.0 484 71.7
Nn1g05239 Nelumbo nucifera HOM05D001663 ORTHO05D005717 1.5e-193 679.9 485 70.9
FAN04G0194 Fragaria x ananassa HOM05D001663 ORTHO05D005717 3.3e-193 678.7 480 71.5
Duzib093G0504 Durio zibethinus HOM05D001663 ORTHO05D005717 7.3e-193 677.6 485 69.9
Cpa.g.sc1782.1 Carica papaya HOM05D001663 ORTHO05D005717 2.8e-192 675.6 485 71.5
TWI12G1423 Tripterygium wilfordii HOM05D001663 ORTHO05D005717 2.8e-192 675.6 485 70.9
MD08G1174500 Malus domestica HOM05D001663 ORTHO05D005717 6.2e-192 674.5 482 71.6
Gorai.005G092500 Gossypium raimondii HOM05D001663 ORTHO05D005717 8.9e-191 670.6 485 69.1
CiPaw.05G231300 Carya illinoinensis HOM05D001663 ORTHO05D005717 1.5e-190 669.8 486 71.6
DCAR_003554 Daucus carota HOM05D001663 ORTHO05D005717 2.0e-190 669.5 477 70.6
Sabra02G0071900 Salix brachista HOM05D001663 ORTHO05D005717 2.6e-190 669.1 502 67.9
arahy.Tifrunner.gnm1.ann1.7M6WCL Arachis hypogaea HOM05D001663 ORTHO05D005717 3.4e-190 668.7 485 70.5
MD15G1361100 Malus domestica HOM05D001663 ORTHO05D005717 9.9e-190 667.2 483 71.0
QL12p035556 Quercus lobata HOM05D001663 ORTHO05D005717 1.3e-189 666.8 480 69.8
ECA246G3782 Erigeron canadensis HOM05D001663 ORTHO05D005717 1.7e-189 666.4 485 72.0
Gohir.A02G075400 Gossypium hirsutum HOM05D001663 ORTHO05D005717 1.4e-188 663.3 485 68.0
Potri.002G090900 Populus trichocarpa HOM05D001663 ORTHO05D005717 4.6e-187 658.3 485 68.5
SalBow7G1241 Salvia bowleyana HOM05D001663 ORTHO05D005717 1.3e-186 656.8 540 64.8
Aqoxy3G00244 Aquilegia oxysepala HOM05D001663 ORTHO05D005717 2.3e-186 656.0 516 65.3
CANSAT25G1457 Cannabis sativa HOM05D001663 ORTHO05D005717 1.1e-185 653.7 484 67.6
Glyma.13G085400 Glycine max HOM05D001663 ORTHO05D005717 1.1e-185 653.7 485 69.9
EL10Ac8g18308 Beta vulgaris HOM05D001663 ORTHO05D005717 7.3e-185 651.0 482 68.3
Ah.09g230050 Amaranthus hybridus HOM05D001663 ORTHO05D005717 9.5e-185 650.6 482 67.8
PGR042G1550 Punica granatum HOM05D001663 ORTHO05D005717 4.7e-184 648.3 483 67.9
PSO210G6007 Papaver somniferum HOM05D001663 ORTHO05D005717 2.4e-183 646.0 485 67.8
PSO447G0047 Papaver somniferum HOM05D001663 ORTHO05D005717 2.4e-183 646.0 485 67.8
Thhalv10028627m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 8.9e-183 644.0 485 67.8
Aa31LG9G14450 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.1e-180 637.1 485 67.2
Gohir.D02G082500 Gossypium hirsutum HOM05D001663 ORTHO05D005717 2.4e-180 636.0 485 66.0
AT4G08540 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 2.1e-179 632.9 485 66.6
RcHm_v2.0_Chr7g0240361 Rosa chinensis HOM05D001663 ORTHO05D005717 2.7e-179 632.5 427 74.7
Sp6g09330 Schrenkiella parvula HOM05D001663 ORTHO05D005717 3.5e-179 632.1 485 66.6
THA.LOC104816946 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.7e-178 629.8 487 66.5
MSTRG.947 Avicennia marina HOM05D001663 ORTHO05D005717 6.6e-178 627.9 484 68.0
Haze_00550 Corylus avellana HOM05D001663 ORTHO05D005717 1.9e-177 626.3 481 68.2
THA.LOC104813136 Tarenaya hassleriana HOM05D001663 ORTHO05D005717 1.2e-176 623.6 482 66.8
BcaC04g20910 Brassica carinata HOM05D001663 ORTHO05D005717 5.2e-175 618.2 485 65.4
C09p38040 Brassica napus HOM05D001663 ORTHO05D005717 5.2e-175 618.2 485 65.4
BolC9t56640H Brassica oleracea HOM05D001663 ORTHO05D005717 5.2e-175 618.2 485 65.4
SGA_v2.0_scaffold48G18009 Striga asiatica HOM05D001663 ORTHO05D005717 1.2e-174 617.1 484 67.6
A09p30170 Brassica napus HOM05D001663 ORTHO05D005717 1.5e-174 616.7 485 64.7
BcaB01g01352 Brassica carinata HOM05D001663 ORTHO05D005717 2.0e-174 616.3 485 65.4
Lsat_1_v5_gn_6_102021 Lactuca sativa HOM05D001663 ORTHO05D005717 2.6e-174 615.9 492 66.1
CARHR259570 Cardamine hirsuta HOM05D001663 ORTHO05D005717 7.6e-174 614.4 485 65.2
Carub.0006s2708 Capsella rubella HOM05D001663 ORTHO05D005717 4.9e-173 611.7 485 65.4
Glyma.14G167200 Glycine max HOM05D001663 ORTHO05D005717 8.4e-173 610.9 427 73.3
Lj6A263G20 Lonicera japonica HOM05D001663 ORTHO05D005717 1.6e-168 596.7 485 66.2
Actinidia29571 Actinidia chinensis HOM05D001663 ORTHO05D005717 2.1e-168 596.3 448 70.3
Cfa015941 Carpinus fangiana HOM05D001663 ORTHO05D005717 3.6e-168 595.5 479 67.2
MELO3C008130.2 Cucumis melo HOM05D001663 ORTHO05D005717 1.8e-167 593.2 483 63.6
AUR62033240 Chenopodium quinoa HOM05D001663 ORTHO05D005717 2.4e-167 592.8 429 68.8
CSS0003227 Camellia sinensis var. sinensis HOM05D001663 ORTHO05D005717 1.1e-164 583.9 384 78.1
CsaV3_2G033570 Cucumis sativus L. HOM05D001663 ORTHO05D005717 3.2e-164 582.4 484 62.4
AL6G42350 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 1.3e-160 570.5 485 62.1
Sed0003415 Sechium edule HOM05D001663 ORTHO05D005717 3.7e-160 568.9 477 63.1
ClCG11G008030 Citrullus lanatus HOM05D001663 ORTHO05D005717 5.8e-158 561.6 502 60.4
Atru.chr13.1295 Acer truncatum HOM05D001663 ORTHO05D005717 9.9e-158 560.8 381 74.8
Psat2g076640 Pisum sativum HOM05D001663 ORTHO05D005717 1.3e-157 560.5 414 71.0
FAN13G3230 Fragaria x ananassa HOM05D001663 ORTHO05D005717 9.3e-156 554.3 484 61.4
Hund26324 Selenicereus undatus HOM05D001663 ORTHO05D005717 5.6e-153 545.0 389 69.9
Sc18g0007560 Simmondsia chinensis HOM05D001663 ORTHO05D005717 6.9e-151 538.1 381 70.6
BraA09t38581Z Brassica rapa HOM05D001663 ORTHO05D005717 1.7e-149 533.5 585 51.6
ATR0564G349 Amborella trichopoda HOM05D001663 ORTHO05D005717 1.9e-145 520.0 491 55.4
Dinv13062 Davidia involucrata HOM05D001663 ORTHO05D005717 1.8e-143 513.5 344 76.7
AUR62021323 Chenopodium quinoa HOM05D001663 ORTHO05D005717 6.5e-141 505.0 482 55.8
Oeu035400.3 Olea europaea HOM05D001663 ORTHO05D005717 3.9e-130 469.2 815 39.4
Gohir.A05G268300 Gossypium hirsutum HOM05D001663 ORTHO05D005717 8.8e-130 468.0 317 73.8
unitig_747.g21547 Utricularia gibba HOM05D001663 ORTHO05D005717 6.1e-123 445.3 482 52.7
HPP92_009232 Vanilla planifolia HOM05D001663 ORTHO05D005717 1.0e-122 444.5 381 60.1
MBI02_g34272_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 9.7e-121 438.0 321 68.8
CDE05G2350 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 1.8e-119 433.7 351 63.0
AL2G38170 Arabidopsis lyrata HOM05D001663 ORTHO05D005717 5.9e-110 402.1 465 49.9
Carub.0002s2479 Capsella rubella HOM05D001663 ORTHO05D005717 2.5e-108 396.7 456 50.2
CARHR071380 Cardamine hirsuta HOM05D001663 ORTHO05D005717 9.4e-108 394.8 463 48.8
AT1G77890 Arabidopsis thaliana HOM05D001663 ORTHO05D005717 5.2e-106 389.0 465 49.2
Sp5g33060 Schrenkiella parvula HOM05D001663 ORTHO05D005717 8.8e-106 388.3 455 49.7
BolC6t40206H Brassica oleracea HOM05D001663 ORTHO05D005717 1.5e-105 387.5 456 49.1
BraA07t31838Z Brassica rapa HOM05D001663 ORTHO05D005717 1.8e-103 380.6 456 48.0
Aa31LG4G7980 Aethionema arabicum HOM05D001663 ORTHO05D005717 1.1e-100 371.3 480 46.9
BcaB03g15913 Brassica carinata HOM05D001663 ORTHO05D005717 2.5e-100 370.2 456 47.8
Zm00001eb327970 Zea mays HOM05D001663 ORTHO05D005717 2.3e-98 363.6 449 45.9
Zm00001eb109770 Zea mays HOM05D001663 ORTHO05D005717 5.7e-97 359.0 416 48.1
C06p51850 Brassica napus HOM05D001663 ORTHO05D005717 1.1e-95 354.8 378 52.1
A07p43160 Brassica napus HOM05D001663 ORTHO05D005717 3.1e-95 353.2 378 51.3
Pp3c5_11170 Physcomitrium patens HOM05D001663 ORTHO05D005717 6.6e-93 345.5 501 44.5
arahy.Tifrunner.gnm1.ann1.8X036G Arachis hypogaea HOM05D001663 ORTHO05D005717 2.1e-91 340.5 255 69.0
Os07g0626300 Oryza sativa ssp. japonica HOM05D001663 ORTHO05D005717 1.8e-90 337.4 414 47.3
VMungo0647G1200 Vigna mungo HOM05D001663 ORTHO05D005717 6.8e-90 335.5 228 72.4
arahy.Tifrunner.gnm1.ann1.ZLN6KV Arachis hypogaea HOM05D001663 ORTHO05D005717 2.2e-88 330.5 240 69.6
Actinidia33165 Actinidia chinensis HOM05D001663 ORTHO05D005717 4.3e-84 316.2 250 66.8
Thhalv10018451m.g Eutrema salsugineum HOM05D001663 ORTHO05D005717 5.4e-79 299.3 455 43.1
Mapoly0103s0077 Marchantia polymorpha HOM05D001663 ORTHO05D005717 3.5e-78 296.6 495 39.6
SEGI_08259 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.4e-55 221.5 315 42.2
MBI02_g34271_MAGBIO Magnolia biondii HOM05D001663 ORTHO05D005717 1.3e-53 214.9 191 60.2
SEGI_31098 Sequoiadendron giganteum HOM05D001663 ORTHO05D005717 1.3e-48 198.4 209 51.7
AagrBONN_evm.TU.Sc2ySwM_344.1096 Anthoceros agrestis HOM05D001663 ORTHO05D005717 8.7e-45 185.7 440 31.8
CBR_g4197 Chara braunii HOM05D001663 ORTHO05D005717 7.4e-44 182.6 515 31.3
BcaC08g47627 Brassica carinata HOM05D001663 ORTHO05D005717 2.1e-43 181.0 203 48.3
Actinidia33166 Actinidia chinensis HOM05D001663 ORTHO05D005717 1.3e-32 145.2 106 68.9
Atru.chr13.1296 Acer truncatum HOM05D001663 ORTHO05D005717 3.2e-31 140.6 102 65.7
CDE05G1781 Ceratophyllum demersum HOM05D001663 ORTHO05D005717 2.9e-16 90.9 90 50.0
Zm00001eb031630 Zea mays HOM05D001663 ORTHO05D005717 9.4e-15 85.9 143 35.7
Dinv13063 Davidia involucrata HOM05D001663 ORTHO05D005717 4.4e-12 77.0 62 62.9
SEGI_07227 Sequoiadendron giganteum HOM05D001663 ORTHO05D015595 1.9e-07 61.6 88 38.6
Cre08.g377600 Chlamydomonas reinhardtii HOM05D001663 ORTHO05D005717 5.5e-07 60.1 592 20.1
HanXRQChr01g0001151 Helianthus annuus HOM05D001663 ORTHO05D005717 4.7e-06 57.0 141 33.3


User provided reference genes

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