Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 3.4e-232 808.1 462 100.0
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 1.1e-227 793.1 462 98.3
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 4.3e-227 791.2 462 98.1
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 8.4e-223 776.9 462 95.5
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 5.3e-209 731.1 463 90.5
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.6e-197 693.0 461 87.2
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 3.1e-193 678.7 461 84.4
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 3.8e-191 671.8 461 83.5
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 5.0e-191 671.4 461 83.5
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.8e-188 662.9 459 81.3
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.1e-187 660.2 459 82.6
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 1.7e-186 656.4 459 83.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 2.2e-186 656.0 459 82.8
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 8.2e-186 654.1 461 82.4
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 9.1e-185 650.6 463 80.8
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 5.5e-182 641.3 462 81.0
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 1.6e-181 639.8 462 80.3
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 4.7e-181 638.3 462 79.7
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 8.0e-181 637.5 462 80.3
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 1.8e-180 636.3 462 80.3
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 4.0e-180 635.2 466 77.7
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 8.8e-180 634.0 461 79.6
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.0e-179 632.9 462 77.3
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 2.0e-179 632.9 462 80.3
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 5.7e-179 631.3 462 78.6
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 9.8e-179 630.6 459 79.1
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 1.3e-178 630.2 462 77.3
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 4.8e-178 628.2 465 78.5
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 6.3e-178 627.9 459 76.7
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 7.0e-177 624.4 462 79.2
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 9.1e-177 624.0 477 76.5
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 2.7e-176 622.5 492 74.4
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 1.7e-175 619.8 459 77.1
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 2.9e-175 619.0 465 77.4
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 3.8e-175 618.6 460 76.5
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 8.5e-175 617.5 461 78.1
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 8.5e-175 617.5 459 76.5
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 8.5e-175 617.5 483 74.9
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 1.1e-174 617.1 463 75.8
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 1.1e-174 617.1 463 78.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 1.5e-174 616.7 464 78.7
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 2.5e-174 615.9 464 78.7
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 4.2e-174 615.1 457 76.4
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 5.5e-174 614.8 464 77.8
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 9.4e-174 614.0 462 77.3
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 1.6e-173 613.2 461 76.6
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 2.1e-173 612.8 462 76.0
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 8.0e-173 610.9 460 75.4
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.2e-171 607.1 464 70.0
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 1.5e-171 606.7 463 72.8
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 9.8e-171 604.0 462 76.6
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 9.8e-171 604.0 460 76.7
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 1.7e-170 603.2 462 75.8
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.2e-170 602.8 460 77.0
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 2.8e-170 602.4 460 75.9
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 3.7e-170 602.1 460 77.4
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 6.3e-170 601.3 462 75.8
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 1.1e-169 600.5 462 76.4
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 2.4e-169 599.4 461 76.8
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 1.6e-168 596.7 441 79.6
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 1.6e-168 596.7 460 75.9
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 4.5e-168 595.1 462 76.4
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 5.9e-168 594.7 460 68.5
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 5.9e-168 594.7 460 68.5
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 1.0e-167 594.0 460 77.0
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 3.8e-167 592.0 462 73.4
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 3.8e-167 592.0 460 75.4
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 5.0e-167 591.7 459 75.2
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 6.6e-167 591.3 459 73.0
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 2.1e-165 586.3 505 64.4
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 3.6e-165 585.5 462 73.4
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.7e-165 585.1 462 73.4
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 6.1e-165 584.7 459 74.1
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 8.0e-165 584.3 459 74.3
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 2.3e-164 582.8 465 73.5
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 5.2e-164 581.6 462 73.2
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.2e-164 581.6 462 72.7
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 5.2e-164 581.6 455 74.9
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 6.8e-164 581.3 455 74.1
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 3.4e-163 578.9 462 73.2
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 7.5e-163 577.8 465 67.1
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 7.5e-163 577.8 461 72.5
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 9.8e-163 577.4 455 73.8
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 1.7e-162 576.6 455 73.6
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.9e-162 575.9 455 73.4
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 8.3e-162 574.3 461 72.2
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 5.4e-161 571.6 466 71.7
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 3.3e-158 562.4 461 72.2
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 6.2e-157 558.1 387 72.9
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 1.4e-156 557.0 389 72.2
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.4e-156 557.0 462 71.6
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 3.4e-155 552.4 462 71.0
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 7.5e-155 551.2 462 71.4
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.9e-154 548.5 462 70.6
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.4e-154 548.1 463 71.5
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 1.1e-153 547.4 387 71.3
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 1.4e-153 547.0 389 72.2
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 1.2e-152 543.9 461 70.7
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.6e-152 542.0 462 69.7
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 6.0e-152 541.6 462 64.3
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 1.0e-151 540.8 462 69.0
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 1.3e-151 540.4 551 62.6
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 5.6e-150 535.0 462 68.2
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 8.1e-149 531.2 389 70.7
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 2.1e-144 516.5 463 59.8
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 1.3e-143 513.8 458 67.5
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 2.8e-141 506.1 495 65.3
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 3.6e-141 505.8 409 75.8
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 2.1e-136 490.0 460 66.7
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.3e-135 487.3 462 64.5
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 6.2e-133 478.4 462 63.2
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 7.1e-129 464.9 384 72.4
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 2.8e-117 426.4 365 62.5
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 7.1e-113 411.8 463 56.4
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 5.6e-110 402.1 467 52.0
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 1.1e-100 371.3 461 50.5
TAR628G1140 Trochodendron aralioides HOM05D005230 ORTHO05D006506 1.0e-98 364.8 301 65.1
Dinv24610 Davidia involucrata HOM05D005230 ORTHO05D006506 3.9e-95 352.8 314 64.6
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 2.0e-78 297.4 292 67.5
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 2.1e-64 250.8 394 39.6
CBR_g54067 Chara braunii HOM05D005230 ORTHO05D006506 1.0e-63 248.4 390 40.3
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.5e-58 229.2 242 53.7
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.1e-57 228.4 189 67.7
Cre03.g207825 Chlamydomonas reinhardtii HOM05D005230 ORTHO05D006506 3.5e-51 206.8 505 39.0
CSS0018745 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.4e-47 194.9 158 66.5
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 4.0e-47 193.4 163 62.6
Gohir.A05G264150 Gossypium hirsutum HOM05D005230 ORTHO05D006506 6.4e-45 186.0 123 74.0
MCO03G336 Micromonas commoda HOM05D005230 ORTHO05D006506 1.0e-42 178.7 397 30.5
PRCOL_00006600 Prasinoderma coloniale HOM05D005230 ORTHO05D006506 1.3e-37 161.8 510 33.9
FvH4_4g06340 Fragaria vesca HOM05D005230 ORTHO05D006506 9.2e-36 155.6 121 68.6
VMungo0720G0475 Vigna mungo HOM05D005230 ORTHO05D051605 4.0e-31 140.2 135 59.3
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.2e-28 130.6 156 51.3
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 3.2e-20 104.0 68 77.9
VMungo0251G1518 Vigna mungo HOM05D005230 ORTHO05D051605 1.3e-18 98.6 220 35.5
VMungo1309G2461 Vigna mungo HOM05D002467 ORTHO05D013374 5.6e-17 93.2 101 58.4
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 1.2e-16 92.0 100 82.0
Psat2g003760 Pisum sativum HOM05D005230 ORTHO05D006506 3.6e-16 90.5 91 58.2
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 4.7e-16 90.1 55 83.6
Psat0s3158g0040 Pisum sativum HOM05D005230 ORTHO05D320643 1.0e-10 72.4 60 58.3
VMungo1383G0996 Vigna mungo HOM05D002467 ORTHO05D013374 2.3e-10 71.2 59 64.4
Psat2g028360 Pisum sativum HOM05D005230 ORTHO05D006506 2.5e-09 67.8 49 73.5
Psat0s472g0120 Pisum sativum HOM05D005230 ORTHO05D023087 4.3e-09 67.0 62 54.8
TAR623G0477 Trochodendron aralioides HOM05D005230 ORTHO05D006506 4.3e-09 67.0 97 44.3
Psat4g142680 Pisum sativum HOM05D000493 ORTHO05D001638 5.6e-09 66.6 61 54.1
Psat4g142760 Pisum sativum HOM05D000493 ORTHO05D004446 9.6e-09 65.9 71 49.3
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.6e-08 65.1 49 73.5
PRCOL_00001177 Prasinoderma coloniale HOM05D004145 ORTHO05D004879 4.0e-07 60.5 391 21.7
Psat5g186320 Pisum sativum HOM05D000280 ORTHO05D004446 2.0e-06 58.2 113 38.9


User provided reference genes

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