Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 1.9e-234 815.5 412 100.0
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 3.2e-221 771.5 412 94.4
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 9.2e-221 770.0 412 94.7
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 9.3e-181 637.1 404 82.7
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 7.2e-157 557.8 307 88.9
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 4.6e-156 555.1 416 73.3
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 7.9e-156 554.3 364 80.2
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 4.2e-141 505.4 390 65.9
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 3.1e-136 489.2 401 63.3
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 4.1e-136 488.8 390 63.6
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 1.0e-134 484.2 410 63.4
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 6.5e-134 481.5 409 61.1
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 9.4e-133 477.6 413 61.0
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 4.7e-132 475.3 414 62.1
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.5e-130 470.3 389 63.5
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 1.5e-130 470.3 401 61.1
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 5.7e-130 468.4 411 59.9
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 7.5e-130 468.0 407 59.5
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 1.3e-129 467.2 398 61.6
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 1.3e-129 467.2 398 61.6
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 1.3e-129 467.2 402 62.7
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 1.6e-127 460.3 398 60.1
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 2.0e-127 459.9 422 59.2
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 5.9e-127 458.4 403 60.5
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 7.7e-127 458.0 387 61.5
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.3e-126 457.2 412 59.5
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 1.3e-126 457.2 374 63.9
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 2.9e-126 456.1 390 61.3
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 5.0e-126 455.3 400 59.0
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.1e-125 454.1 396 60.6
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 8.0e-124 448.0 408 58.6
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 2.2e-121 439.9 395 59.0
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 8.3e-121 438.0 398 57.8
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 1.8e-120 436.8 393 58.8
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 4.1e-120 435.6 403 58.1
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 5.4e-120 435.3 362 61.9
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 1.2e-119 434.1 398 58.8
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.0e-118 431.0 376 58.0
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 2.3e-118 429.9 379 57.3
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 3.0e-115 419.5 440 52.7
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 5.2e-115 418.7 388 56.4
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 8.9e-115 417.9 361 59.3
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 1.5e-114 417.2 397 56.2
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 2.0e-114 416.8 409 52.8
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 2.0e-114 416.8 406 53.4
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 2.0e-114 416.8 392 56.6
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 4.1e-112 409.1 382 55.2
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 9.2e-112 407.9 387 55.6
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 2.7e-111 406.4 378 55.8
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 8.6e-110 401.4 347 61.4
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 1.1e-109 401.0 378 56.6
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 1.5e-109 400.6 397 52.9
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 5.6e-109 398.7 383 55.4
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.6e-108 397.1 316 64.2
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 4.7e-108 395.6 391 54.0
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.3e-107 393.3 352 58.0
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 4.0e-107 392.5 417 51.6
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 6.8e-107 391.7 379 55.7
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-106 391.0 378 56.3
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 2.0e-106 390.2 368 57.1
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 3.7e-105 386.0 384 53.1
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 1.1e-104 384.4 423 51.1
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 3.2e-104 382.9 404 51.2
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 3.2e-104 382.9 390 52.1
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 4.1e-104 382.5 404 50.7
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 4.1e-104 382.5 396 54.5
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 9.2e-104 381.3 384 54.7
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.2e-103 380.9 414 51.7
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 1.6e-103 380.6 401 50.9
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 2.0e-103 380.2 427 50.8
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 2.7e-103 379.8 420 49.3
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 3.5e-103 379.4 402 50.5
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 4.6e-103 379.0 416 48.8
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 4.6e-103 379.0 391 50.4
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 6.0e-103 378.6 424 50.2
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 6.0e-103 378.6 259 68.3
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 7.8e-103 378.3 374 52.4
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 6.6e-102 375.2 383 52.2
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 8.6e-102 374.8 402 50.5
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 7.3e-101 371.7 404 50.0
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 3.6e-100 369.4 381 53.3
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 3.6e-100 369.4 404 49.0
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 4.4e-98 362.5 397 49.9
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 4.9e-97 359.0 379 52.2
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 3.2e-96 356.3 256 68.4
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 2.7e-95 353.2 313 61.7
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 3.5e-95 352.8 397 49.6
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 1.1e-93 347.8 415 50.6
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 4.3e-93 345.9 379 47.8
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 2.8e-92 343.2 412 46.6
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 2.3e-91 340.1 368 51.9
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 4.0e-91 339.3 387 49.4
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 6.8e-91 338.6 380 48.4
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 1.5e-90 337.4 379 47.5
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 5.8e-90 335.5 403 46.2
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 4.9e-89 332.4 233 67.0
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 1.9e-88 330.5 456 43.4
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.6e-87 325.9 355 48.7
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.3e-86 324.3 410 45.4
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 3.3e-85 319.7 378 48.7
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 3.6e-84 316.2 282 56.4
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 1.1e-83 314.7 376 48.7
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.4e-82 309.3 373 47.7
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 5.8e-82 308.9 389 44.7
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 1.1e-77 294.7 259 54.4
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 4.3e-77 292.7 375 42.4
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 7.3e-77 292.0 316 46.5
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 1.6e-76 290.8 303 50.2
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 4.8e-76 289.3 402 43.0
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 1.8e-75 287.3 305 48.9
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.5e-74 284.3 404 41.6
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 4.4e-74 282.7 284 47.9
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 1.4e-72 277.7 296 48.6
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 7.1e-72 275.4 288 52.4
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 1.9e-64 250.8 188 66.0
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 8.7e-62 241.9 371 41.0
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.6e-60 237.7 181 60.2
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 2.1e-60 237.3 275 42.5
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 6.2e-60 235.7 254 54.3
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 4.2e-56 223.0 178 58.4
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 4.6e-55 219.5 183 55.7
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 4.2e-48 196.4 224 54.0
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 1.5e-45 188.0 244 47.5
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 3.1e-43 180.3 134 61.2
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 7.7e-42 175.6 223 44.4
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 2.1e-31 141.0 112 59.8
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 3.7e-28 130.2 106 57.5
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.8e-27 127.9 101 58.4
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 4.1e-27 126.7 106 56.6
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 5.3e-27 126.3 111 55.9
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 1.2e-26 125.2 106 57.5
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 1.3e-25 121.7 176 48.3
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 1.7e-25 121.3 101 53.5
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.7e-25 121.3 108 55.6
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 4.2e-24 116.7 86 65.1
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 2.1e-23 114.4 89 61.8
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 5.2e-22 109.8 168 42.9
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 9.7e-21 105.5 77 63.6
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 4.0e-14 83.6 115 35.7
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 4.8e-12 76.6 153 43.8
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.6e-10 71.6 149 42.3
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 3.5e-10 70.5 137 43.8
AT3G57110 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.0e-06 58.9 134 35.8


User provided reference genes

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