Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027317 Solanum tuberosum HOM05D002372 ORTHO05D007172 1.0e-69 266.5 130 100.0
Nitab4.5_0001105g0080 Nicotiana tabacum HOM05D002372 ORTHO05D002592 7.3e-15 84.3 99 48.5
Nitab4.5_0012134g0010 Nicotiana tabacum HOM05D002372 ORTHO05D002592 7.3e-15 84.3 99 48.5
Peaxi162Scf00016g02810 Petunia axillaris HOM05D002372 ORTHO05D002592 9.6e-15 84.0 99 47.5
SGA_v2.0_scaffold225G43030 Striga asiatica HOM05D002372 ORTHO05D002592 1.1e-13 80.5 99 46.5
Ah.09g231880 Amaranthus hybridus HOM05D002372 ORTHO05D002592 2.4e-13 79.3 91 47.3
SGA_v2.0_scaffold32G13002 Striga asiatica HOM05D002372 ORTHO05D002592 3.1e-13 79.0 99 45.5
Cfa004637 Carpinus fangiana HOM05D002372 ORTHO05D002592 5.3e-13 78.2 99 45.5
Oeu021364.1 Olea europaea HOM05D002372 ORTHO05D002592 9.0e-13 77.4 114 42.1
TAR381G0570 Trochodendron aralioides HOM05D002372 ORTHO05D002592 9.0e-13 77.4 114 41.2
ECA236G1515 Erigeron canadensis HOM05D002372 ORTHO05D002592 1.2e-12 77.0 114 40.4
MBI16_g31592_MAGBIO Magnolia biondii HOM05D002372 ORTHO05D002592 1.2e-12 77.0 99 45.5
Aqoxy6G02690 Aquilegia oxysepala HOM05D002372 ORTHO05D002592 3.4e-12 75.5 114 41.2
DCAR_003608 Daucus carota HOM05D002372 ORTHO05D002592 3.4e-12 75.5 112 41.1
Rhsim11G0153700 Rhododendron simsii HOM05D002372 ORTHO05D002592 3.4e-12 75.5 114 41.2
RhsimUnG0124900 Rhododendron simsii HOM05D002372 ORTHO05D002592 3.4e-12 75.5 114 41.2
Hund12570 Selenicereus undatus HOM05D002372 ORTHO05D002592 3.4e-12 75.5 117 41.0
Solyc01g107160.3 Solanum lycopersicum HOM05D002372 ORTHO05D002592 3.4e-12 75.5 114 39.5
Sopen01g049420 Solanum pennellii HOM05D002372 ORTHO05D002592 3.4e-12 75.5 114 39.5
PGSC0003DMG400025750 Solanum tuberosum HOM05D002372 ORTHO05D002592 3.4e-12 75.5 114 39.5
MSTRG.5319 Avicennia marina HOM05D002372 ORTHO05D002592 4.4e-12 75.1 114 41.2
AUR62034087 Chenopodium quinoa HOM05D002372 ORTHO05D002592 4.4e-12 75.1 114 41.2
Aqoxy5G00888 Aquilegia oxysepala HOM05D002372 ORTHO05D002592 5.8e-12 74.7 118 39.0
Migut.N01143 Erythranthe guttata HOM05D002372 ORTHO05D002592 5.8e-12 74.7 114 41.2
Lj5C218T18 Lonicera japonica HOM05D002372 ORTHO05D002592 5.8e-12 74.7 114 41.2
SalBow3G2017 Salvia bowleyana HOM05D002372 ORTHO05D002592 5.8e-12 74.7 114 41.2
TAR628G1237 Trochodendron aralioides HOM05D002372 ORTHO05D002592 5.8e-12 74.7 114 40.4
CSS0027801 Camellia sinensis var. sinensis HOM05D002372 ORTHO05D002592 7.6e-12 74.3 114 40.4
AUR62042992 Chenopodium quinoa HOM05D002372 ORTHO05D002592 9.9e-12 73.9 114 40.4
Dinv15800 Davidia involucrata HOM05D002372 ORTHO05D002592 9.9e-12 73.9 114 40.4
Cc02_g19760 Coffea canephora HOM05D002372 ORTHO05D002592 1.3e-11 73.6 114 40.4
HanXRQChr03g0069911 Helianthus annuus HOM05D002372 ORTHO05D002592 1.3e-11 73.6 114 40.4
Nn1g04590 Nelumbo nucifera HOM05D002372 ORTHO05D002592 1.3e-11 73.6 114 40.4
Sc18g0003480 Simmondsia chinensis HOM05D002372 ORTHO05D002592 1.3e-11 73.6 114 40.4
AagrBONN_evm.TU.Sc2ySwM_362.2647 Anthoceros agrestis HOM05D002372 ORTHO05D002592 1.7e-11 73.2 114 37.7
MSTRG.16683 Avicennia marina HOM05D002372 ORTHO05D002592 1.7e-11 73.2 114 40.4
Dinv42231 Davidia involucrata HOM05D002372 ORTHO05D002592 1.7e-11 73.2 114 39.5
ECA240G3850 Erigeron canadensis HOM05D002372 ORTHO05D002592 1.7e-11 73.2 114 38.6
Mapoly0036s0153 Marchantia polymorpha HOM05D002372 ORTHO05D002592 1.7e-11 73.2 114 39.5
EL10Ac8g19381 Beta vulgaris HOM05D002372 ORTHO05D002592 2.2e-11 72.8 114 39.5
CSS0031062 Camellia sinensis var. sinensis HOM05D002372 ORTHO05D002592 2.2e-11 72.8 114 39.5
SMO116G0292 Selaginella moellendorffii HOM05D002372 ORTHO05D002592 2.2e-11 72.8 114 37.7
TAR625G0713 Trochodendron aralioides HOM05D002372 ORTHO05D002592 2.2e-11 72.8 114 39.5
CiPaw.05G016800 Carya illinoinensis HOM05D002372 ORTHO05D002592 2.9e-11 72.4 114 40.4
CiPaw.06G166200 Carya illinoinensis HOM05D002372 ORTHO05D002592 2.9e-11 72.4 114 40.4
MD05G1098500 Malus domestica HOM05D002372 ORTHO05D002592 2.9e-11 72.4 114 40.4
MD10G1104300 Malus domestica HOM05D002372 ORTHO05D002592 2.9e-11 72.4 114 40.4
Medtr5g005120 Medicago truncatula HOM05D002372 ORTHO05D002592 2.9e-11 72.4 117 39.3
Nn2g15747 Nelumbo nucifera HOM05D002372 ORTHO05D002592 2.9e-11 72.4 114 39.5
PGR120G0005 Punica granatum HOM05D002372 ORTHO05D002592 2.9e-11 72.4 114 40.4
PGR142G2817 Punica granatum HOM05D002372 ORTHO05D002592 2.9e-11 72.4 114 40.4
PSO017G4125 Papaver somniferum HOM05D002372 ORTHO05D002592 3.8e-11 72.0 112 39.3
PSO170G0394 Papaver somniferum HOM05D002372 ORTHO05D002592 3.8e-11 72.0 112 39.3
Pp3c12_14410 Physcomitrium patens HOM05D002372 ORTHO05D002592 3.8e-11 72.0 114 37.7
Sabra16G0184500 Salix brachista HOM05D002372 ORTHO05D002592 3.8e-11 72.0 114 41.2
vmacro01968 Vaccinium macrocarpon HOM05D002372 ORTHO05D002592 3.8e-11 72.0 133 36.8
arahy.Tifrunner.gnm1.ann1.4F9CQB Arachis hypogaea HOM05D002372 ORTHO05D002592 4.9e-11 71.6 117 39.3
arahy.Tifrunner.gnm1.ann1.M9B1UW Arachis hypogaea HOM05D002372 ORTHO05D002592 4.9e-11 71.6 117 39.3
FAN15G2929 Fragaria x ananassa HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 39.5
FAN24G0362 Fragaria x ananassa HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 39.5
Gohir.A13G046300 Gossypium hirsutum HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 39.5
Gohir.D13G045401 Gossypium hirsutum HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 39.5
Gorai.013G050200 Gossypium raimondii HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 39.5
Hma1.2p1_1773F.1_g301720 Hydrangea macrophylla HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 38.6
Lsat_1_v5_gn_9_111820 Lactuca sativa HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 39.5
Potri.001G295100 Populus trichocarpa HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 40.4
RcHm_v2.0_Chr6g0253521 Rosa chinensis HOM05D002372 ORTHO05D002592 4.9e-11 71.6 114 39.5
Aa31LG10G4190 Aethionema arabicum HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 38.6
BcaB04g20692 Brassica carinata HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 39.5
BcaC09g48924 Brassica carinata HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 39.5
A01p35090 Brassica napus HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 39.5
C01p44520 Brassica napus HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 39.5
BolC1t04418H Brassica oleracea HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 39.5
BraA01t03591Z Brassica rapa HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 39.5
CBR_g633 Chara braunii HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 39.5
Migut.B00441 Erythranthe guttata HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 42.1
Oeu037278.2 Olea europaea HOM05D002372 ORTHO05D002592 6.4e-11 71.2 146 35.6
Sp3g17630 Schrenkiella parvula HOM05D002372 ORTHO05D002592 6.4e-11 71.2 114 39.5
Ca_24354_v3 Cicer arietinum L. HOM05D002372 ORTHO05D002592 8.4e-11 70.9 114 39.5
Duzib132G0475 Durio zibethinus HOM05D002372 ORTHO05D002592 8.4e-11 70.9 114 39.5
Glyma.20G133400 Glycine max HOM05D002372 ORTHO05D002592 8.4e-11 70.9 114 39.5
Psat4g227840 Pisum sativum HOM05D002372 ORTHO05D002592 8.4e-11 70.9 114 39.5
Prupe.8G143300 Prunus persica HOM05D002372 ORTHO05D002592 8.4e-11 70.9 114 39.5
THA.LOC104815226 Tarenaya hassleriana HOM05D002372 ORTHO05D002592 8.4e-11 70.9 114 39.5
Thecc.02G115700 Theobroma cacao HOM05D002372 ORTHO05D002592 8.4e-11 70.9 114 39.5
VMungo0720G2618 Vigna mungo HOM05D002372 ORTHO05D002592 8.4e-11 70.9 118 37.3
Atru.chr5.2375 Acer truncatum HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 38.6
DCAR_029120 Daucus carota HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 37.7
Glyma.10G258300 Glycine max HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 38.6
Gohir.D02G204800 Gossypium hirsutum HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 38.6
Gorai.005G232100 Gossypium raimondii HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 38.6
Lsat_1_v5_gn_7_85260 Lactuca sativa HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 37.7
Manes.10G079800 Manihot esculenta HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 39.5
Phvul.007G044000 Phaseolus vulgaris HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 38.6
Potri.009G089200 Populus trichocarpa HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 40.4
TPR.G8288 Trifolium pratense HOM05D002372 ORTHO05D002592 1.1e-10 70.5 114 39.5
CBR_g50927 Chara braunii HOM05D002372 ORTHO05D002592 1.4e-10 70.1 114 40.4
Ciclev10028761m.g Citrus clementina HOM05D002372 ORTHO05D002592 1.4e-10 70.1 116 38.8
Duzib052G0254 Durio zibethinus HOM05D002372 ORTHO05D002592 1.4e-10 70.1 114 39.5
Lj1g0013878 Lotus japonicus HOM05D002372 ORTHO05D002592 1.4e-10 70.1 114 39.5
Phvul.007G044700 Phaseolus vulgaris HOM05D002372 ORTHO05D002592 1.4e-10 70.1 114 39.5
Sed0011895 Sechium edule HOM05D002372 ORTHO05D002592 1.4e-10 70.1 114 39.5
GSVIVG01037848001 Vitis vinifera HOM05D002372 ORTHO05D002592 1.4e-10 70.1 114 38.6
FAN20G2817 Fragaria x ananassa HOM05D002372 ORTHO05D002592 1.9e-10 69.7 113 38.9
FAN27G2015 Fragaria x ananassa HOM05D002372 ORTHO05D002592 1.9e-10 69.7 114 38.6
MBI16_g22909_MAGBIO Magnolia biondii HOM05D002372 ORTHO05D002592 1.9e-10 69.7 114 37.7
Actinidia34365 Actinidia chinensis HOM05D002372 ORTHO05D002592 2.4e-10 69.3 114 37.7
CDE01G0365 Ceratophyllum demersum HOM05D002372 ORTHO05D002592 2.4e-10 69.3 112 37.5
MELO3C017995.2 Cucumis melo HOM05D002372 ORTHO05D002592 2.4e-10 69.3 114 39.5
Eucgr.I01072 Eucalyptus grandis HOM05D002372 ORTHO05D002592 2.4e-10 69.3 114 38.6
Glyma.20G132800 Glycine max HOM05D002372 ORTHO05D002592 2.4e-10 69.3 114 37.7
Gohir.A03G183200 Gossypium hirsutum HOM05D002372 ORTHO05D002592 2.4e-10 69.3 114 37.7
Nitab4.5_0002259g0090 Nicotiana tabacum HOM05D005759 ORTHO05D007172 2.4e-10 69.3 33 97.0
Sabra09G0069100 Salix brachista HOM05D002372 ORTHO05D002592 2.4e-10 69.3 114 40.4
AL3G33020 Arabidopsis lyrata HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 37.7
AT3G19590 Arabidopsis thaliana HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 37.7
Carub.0003s1943 Capsella rubella HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 37.7
CARHR095040 Cardamine hirsuta HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 37.7
Cpa.g.sc106.59 Carica papaya HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 38.6
CsaV3_4G000390 Cucumis sativus L. HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 38.6
Lalb_Chr05g0210771 Lupinus albus HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 38.6
Os07g0588500 Oryza sativa ssp. japonica HOM05D002372 ORTHO05D002592 3.2e-10 68.9 112 38.4
PSO541G4953 Papaver somniferum HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 37.7
PSO675G5028 Papaver somniferum HOM05D002372 ORTHO05D002592 3.2e-10 68.9 114 37.7
HPP92_009535 Vanilla planifolia HOM05D002372 ORTHO05D002592 4.2e-10 68.6 112 38.4
HPP92_009546 Vanilla planifolia HOM05D002372 ORTHO05D002592 4.2e-10 68.6 112 38.4
CANSAT25G2730 Cannabis sativa HOM05D002372 ORTHO05D002592 5.4e-10 68.2 114 37.7
Thhalv10011632m.g Eutrema salsugineum HOM05D002372 ORTHO05D002592 5.4e-10 68.2 114 37.7
Nitab4.5_0010486g0020 Nicotiana tabacum HOM05D005759 ORTHO05D007172 5.4e-10 68.2 33 93.9
Sp1g36790 Schrenkiella parvula HOM05D002372 ORTHO05D002592 5.4e-10 68.2 114 37.7
THA.LOC104825383 Tarenaya hassleriana HOM05D002372 ORTHO05D002592 5.4e-10 68.2 114 38.6
A08p03470 Brassica napus HOM05D002372 ORTHO05D002592 7.1e-10 67.8 114 36.8
C03p89380 Brassica napus HOM05D002372 ORTHO05D002592 7.1e-10 67.8 114 36.8
BolC3t21252H Brassica oleracea HOM05D002372 ORTHO05D002592 7.1e-10 67.8 114 36.8
BraA08t32378Z Brassica rapa HOM05D002372 ORTHO05D002592 7.1e-10 67.8 114 36.8
Carub.0001s3912 Capsella rubella HOM05D002372 ORTHO05D002592 7.1e-10 67.8 114 36.8
CAN.G135.64 Capsicum annuum HOM05D005759 ORTHO05D007172 7.1e-10 67.8 33 97.0
Peaxi162Scf00244g00007 Petunia axillaris HOM05D005759 ORTHO05D007172 7.1e-10 67.8 33 97.0
QL11p030894 Quercus lobata HOM05D002372 ORTHO05D002592 7.1e-10 67.8 114 37.7
TWI23G1219 Tripterygium wilfordii HOM05D002372 ORTHO05D002592 7.1e-10 67.8 114 37.7
AL1G57460 Arabidopsis lyrata HOM05D002372 ORTHO05D002592 9.3e-10 67.4 114 36.8
AT1G49910 Arabidopsis thaliana HOM05D002372 ORTHO05D002592 9.3e-10 67.4 114 36.8
VMungo0720G0450 Vigna mungo HOM05D002372 ORTHO05D002592 9.3e-10 67.4 112 38.4
Duzib248G1619 Durio zibethinus HOM05D002372 ORTHO05D002592 1.2e-09 67.0 114 36.8
TWI14G0004 Tripterygium wilfordii HOM05D002372 ORTHO05D002592 1.2e-09 67.0 114 37.7
Os03g0448600 Oryza sativa ssp. japonica HOM05D002372 ORTHO05D002592 3.5e-09 65.5 114 36.0
ATR0208G008 Amborella trichopoda HOM05D002372 ORTHO05D002592 4.6e-09 65.1 113 35.4
Thhalv10021448m.g Eutrema salsugineum HOM05D002372 ORTHO05D002592 4.6e-09 65.1 114 36.8
Solyc11g007610.2 Solanum lycopersicum HOM05D005759 ORTHO05D007172 7.8e-09 64.3 33 93.9
Sopen11g003460 Solanum pennellii HOM05D005759 ORTHO05D007172 7.8e-09 64.3 33 93.9
ClCG10G010490 Citrullus lanatus HOM05D002372 ORTHO05D002592 2.3e-08 62.8 99 42.4
PGSC0003DMG400027344 Solanum tuberosum HOM05D005759 ORTHO05D007172 3.0e-08 62.4 33 90.9
Peaxi162Scf00244g00111 Petunia axillaris HOM05D005759 ORTHO05D007172 3.9e-08 62.0 33 87.9
SGA_v2.0_scaffold16G07746 Striga asiatica HOM05D002372 ORTHO05D002592 1.5e-07 60.1 118 30.5
Dinv34106 Davidia involucrata HOM05D004550 ORTHO05D005340 3.3e-07 58.9 116 31.0
ATR0730G197 Amborella trichopoda HOM05D002372 ORTHO05D002592 1.3e-06 57.0 114 29.8
QL03p070017 Quercus lobata HOM05D002372 ORTHO05D002592 2.1e-06 56.2 113 31.0
COL.COLO4_32527 Corchorus olitorius HOM05D002372 ORTHO05D002592 2.8e-06 55.8 35 71.4
SGA_v2.0_scaffold237G43843 Striga asiatica HOM05D002372 ORTHO05D001029 3.6e-06 55.5 111 29.7
PSO357G0303 Papaver somniferum HOM05D002372 ORTHO05D002592 4.8e-06 55.1 113 28.3
Nn4g23306 Nelumbo nucifera HOM05D002372 ORTHO05D002592 8.1e-06 54.3 117 31.6
Sc14g0008050 Simmondsia chinensis HOM05D002372 ORTHO05D002592 8.1e-06 54.3 110 30.9
TPR.G39575 Trifolium pratense HOM05D002372 ORTHO05D002592 8.1e-06 54.3 35 68.6
TAR622G1234 Trochodendron aralioides HOM05D002372 ORTHO05D002592 8.1e-06 54.3 113 30.1


User provided reference genes

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