Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027209 Solanum tuberosum HOM05D004325 ORTHO05D005470 9.3e-99 363.6 193 100.0
Sopen05g031900 Solanum pennellii HOM05D004325 ORTHO05D005470 9.6e-96 353.6 193 97.9
Solyc05g053390.4 Solanum lycopersicum HOM05D004325 ORTHO05D005470 1.3e-95 353.2 193 97.4
Nitab4.5_0000647g0250 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.5e-88 328.9 180 96.1
Nitab4.5_0004165g0020 Nicotiana tabacum HOM05D004325 ORTHO05D005470 2.1e-87 325.9 180 95.6
Peaxi162Scf00228g00059 Petunia axillaris HOM05D004325 ORTHO05D005470 8.7e-81 303.9 192 85.4
Cc03_g00680 Coffea canephora HOM05D004325 ORTHO05D005470 4.3e-80 301.6 191 83.8
Actinidia13352 Actinidia chinensis HOM05D004325 ORTHO05D005470 7.4e-80 300.8 189 83.6
COL.COLO4_34588 Corchorus olitorius HOM05D004325 ORTHO05D005470 6.3e-79 297.7 186 81.7
Duzib151G0878 Durio zibethinus HOM05D004325 ORTHO05D005470 8.2e-79 297.4 186 82.3
Atru.chr4.3046 Acer truncatum HOM05D004325 ORTHO05D005470 2.4e-78 295.8 178 84.8
CSS0027180 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 2.4e-78 295.8 186 82.8
Hma1.2p1_0013F.1_g008360 Hydrangea macrophylla HOM05D004325 ORTHO05D005470 2.4e-78 295.8 183 84.2
Eucgr.E02007 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.1e-78 295.4 183 84.7
Nitab4.5_0000891g0010 Nicotiana tabacum HOM05D004325 ORTHO05D005470 3.1e-78 295.4 196 81.1
Thecc.04G303800 Theobroma cacao HOM05D004325 ORTHO05D005470 4.1e-78 295.0 194 80.4
TAR362G0217 Trochodendron aralioides HOM05D004325 ORTHO05D005470 4.1e-78 295.0 179 85.5
CANSAT78G0850 Cannabis sativa HOM05D004325 ORTHO05D005470 6.9e-78 294.3 184 83.2
ECA233G2476 Erigeron canadensis HOM05D004325 ORTHO05D005470 9.0e-78 293.9 180 83.9
Dinv44270 Davidia involucrata HOM05D004325 ORTHO05D005470 1.5e-77 293.1 191 81.2
HanXRQChr17g0569361 Helianthus annuus HOM05D004325 ORTHO05D005470 2.0e-77 292.7 180 83.3
Migut.N00036 Erythranthe guttata HOM05D004325 ORTHO05D005470 2.6e-77 292.4 178 84.8
Prupe.1G115000 Prunus persica HOM05D004325 ORTHO05D005470 2.6e-77 292.4 191 80.6
Rhsim02G0002800 Rhododendron simsii HOM05D004325 ORTHO05D005470 2.6e-77 292.4 193 79.8
Duzib052G1161 Durio zibethinus HOM05D004325 ORTHO05D005470 4.5e-77 291.6 196 78.6
Nitab4.5_0000177g0050 Nicotiana tabacum HOM05D004325 ORTHO05D005470 4.5e-77 291.6 196 80.1
Cfa015290 Carpinus fangiana HOM05D004325 ORTHO05D005470 7.7e-77 290.8 183 83.6
Haze_01324 Corylus avellana HOM05D004325 ORTHO05D005470 1.0e-76 290.4 178 83.7
CARHR287830 Cardamine hirsuta HOM05D004325 ORTHO05D005470 1.3e-76 290.0 175 84.0
Ciclev10005911m.g Citrus clementina HOM05D004325 ORTHO05D005470 1.7e-76 289.7 185 80.5
MD13G1150800 Malus domestica HOM05D004325 ORTHO05D005470 1.7e-76 289.7 186 81.2
SGA_v2.0_scaffold528G52737 Striga asiatica HOM05D004325 ORTHO05D005470 1.7e-76 289.7 208 76.0
MBI19_g03261_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 2.2e-76 289.3 173 86.7
THA.LOC104827099 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.2e-76 289.3 174 84.5
AT5G49510 Arabidopsis thaliana HOM05D004325 ORTHO05D005470 3.8e-76 288.5 176 83.5
Gohir.A01G034900 Gossypium hirsutum HOM05D004325 ORTHO05D005470 3.8e-76 288.5 197 77.2
CSS0047955 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D005470 6.5e-76 287.7 182 81.3
Thhalv10004957m.g Eutrema salsugineum HOM05D004325 ORTHO05D005470 6.5e-76 287.7 176 83.0
TAR633G1272 Trochodendron aralioides HOM05D004325 ORTHO05D005470 6.5e-76 287.7 176 84.1
AL8G23260 Arabidopsis lyrata HOM05D004325 ORTHO05D005470 8.5e-76 287.3 176 83.0
Manes.03G206300 Manihot esculenta HOM05D004325 ORTHO05D005470 8.5e-76 287.3 180 81.7
Carub.0008s0936 Capsella rubella HOM05D004325 ORTHO05D005470 1.1e-75 287.0 173 84.4
PGR004G2019 Punica granatum HOM05D004325 ORTHO05D005470 1.1e-75 287.0 186 81.7
Cpa.g.sc9.38 Carica papaya HOM05D004325 ORTHO05D005470 1.4e-75 286.6 173 83.8
MD16G1151300 Malus domestica HOM05D004325 ORTHO05D005470 1.4e-75 286.6 191 78.5
MSTRG.24825 Avicennia marina HOM05D004325 ORTHO05D005470 1.9e-75 286.2 175 85.1
Gohir.D01G023556 Gossypium hirsutum HOM05D004325 ORTHO05D005470 2.5e-75 285.8 197 77.2
Gorai.002G030800 Gossypium raimondii HOM05D004325 ORTHO05D005470 2.5e-75 285.8 197 77.2
Lsat_1_v5_gn_1_117981 Lactuca sativa HOM05D004325 ORTHO05D005470 2.5e-75 285.8 178 82.6
PSO421G0271 Papaver somniferum HOM05D004325 ORTHO05D005470 3.2e-75 285.4 191 79.6
VMungo0540G0568 Vigna mungo HOM05D004325 ORTHO05D005470 5.5e-75 284.6 178 81.5
Os12g0562900 Oryza sativa ssp. japonica HOM05D004325 ORTHO05D005470 7.2e-75 284.3 173 85.0
PSO832G3679 Papaver somniferum HOM05D004325 ORTHO05D005470 7.2e-75 284.3 192 79.2
RcHm_v2.0_Chr4g0425791 Rosa chinensis HOM05D004325 ORTHO05D005470 7.2e-75 284.3 187 78.6
Aa31LG11G8140 Aethionema arabicum HOM05D004325 ORTHO05D005470 9.4e-75 283.9 193 78.2
Sed0024233 Sechium edule HOM05D004325 ORTHO05D005470 9.4e-75 283.9 193 79.8
FvH4_4g20250 Fragaria vesca HOM05D004325 ORTHO05D005470 1.2e-74 283.5 183 79.8
Sp2g19810 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.2e-74 283.5 175 82.3
SpUn0021_0040 Schrenkiella parvula HOM05D004325 ORTHO05D005470 1.2e-74 283.5 175 82.3
unitig_0.g2580 Utricularia gibba HOM05D004325 ORTHO05D005470 1.2e-74 283.5 185 78.9
Glyma.09G034400 Glycine max HOM05D004325 ORTHO05D005470 2.1e-74 282.7 179 81.6
arahy.Tifrunner.gnm1.ann1.H88EK8 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-74 282.3 183 79.8
arahy.Tifrunner.gnm1.ann1.NK7FC1 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-74 282.3 183 79.2
arahy.Tifrunner.gnm1.ann1.RG9184 Arachis hypogaea HOM05D004325 ORTHO05D005470 2.7e-74 282.3 183 79.8
BcaB04g19615 Brassica carinata HOM05D004325 ORTHO05D005470 2.7e-74 282.3 189 76.2
Eucgr.D01575 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.7e-74 282.3 183 81.4
Glyma.15G139100 Glycine max HOM05D004325 ORTHO05D005470 2.7e-74 282.3 175 82.3
Potri.008G103400 Populus trichocarpa HOM05D004325 ORTHO05D005470 2.7e-74 282.3 191 77.0
Medtr2g033830 Medicago truncatula HOM05D004325 ORTHO05D005470 3.6e-74 282.0 182 81.3
Zm00001eb136920 Zea mays HOM05D004325 ORTHO05D005470 3.6e-74 282.0 183 80.3
Phvul.006G119000 Phaseolus vulgaris HOM05D004325 ORTHO05D005470 4.6e-74 281.6 176 81.2
TWI73G0086 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 4.6e-74 281.6 181 79.6
Zm00001eb028520 Zea mays HOM05D004325 ORTHO05D005470 6.1e-74 281.2 184 79.9
Ca_00969_v3 Cicer arietinum L. HOM05D004325 ORTHO05D005470 7.9e-74 280.8 179 81.6
Sabra08G0078100 Salix brachista HOM05D004325 ORTHO05D005470 7.9e-74 280.8 191 79.1
Lalb_Chr12g0200831 Lupinus albus HOM05D004325 ORTHO05D005470 1.4e-73 280.0 194 78.4
Sed0016650 Sechium edule HOM05D004325 ORTHO05D005470 1.4e-73 280.0 177 83.1
Sc25g0003210 Simmondsia chinensis HOM05D004325 ORTHO05D005470 1.8e-73 279.6 195 75.9
PSO063G1209 Papaver somniferum HOM05D004325 ORTHO05D005470 2.3e-73 279.3 192 77.6
Hund03133 Selenicereus undatus HOM05D004325 ORTHO05D005470 2.3e-73 279.3 171 83.6
BcaC04g23736 Brassica carinata HOM05D004325 ORTHO05D005470 3.0e-73 278.9 187 76.5
C09p05230 Brassica napus HOM05D004325 ORTHO05D005470 3.0e-73 278.9 187 76.5
CDE01G0033 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 3.9e-73 278.5 183 78.7
Potri.010G147600 Populus trichocarpa HOM05D004325 ORTHO05D005470 3.9e-73 278.5 189 77.2
AUR62039261 Chenopodium quinoa HOM05D004325 ORTHO05D005470 5.1e-73 278.1 189 77.8
Lj6g0013793 Lotus japonicus HOM05D004325 ORTHO05D005470 5.1e-73 278.1 186 78.5
Ah.13g071390 Amaranthus hybridus HOM05D004325 ORTHO05D005470 6.7e-73 277.7 187 79.7
A09p04850 Brassica napus HOM05D004325 ORTHO05D005470 6.7e-73 277.7 187 76.5
BraA09t36122Z Brassica rapa HOM05D004325 ORTHO05D005470 6.7e-73 277.7 187 75.9
ClCG05G006650 Citrullus lanatus HOM05D004325 ORTHO05D005470 6.7e-73 277.7 191 79.1
Psat1g162400 Pisum sativum HOM05D004325 ORTHO05D005470 6.7e-73 277.7 178 80.9
PSO724G0368 Papaver somniferum HOM05D004325 ORTHO05D005470 1.5e-72 276.6 191 78.0
AUR62016229 Chenopodium quinoa HOM05D004325 ORTHO05D005470 2.0e-72 276.2 186 78.0
TPR.G30807 Trifolium pratense HOM05D004325 ORTHO05D005470 2.0e-72 276.2 187 79.1
THA.LOC104802708 Tarenaya hassleriana HOM05D004325 ORTHO05D005470 2.5e-72 275.8 184 79.3
HPP92_027563 Vanilla planifolia HOM05D004325 ORTHO05D005470 3.3e-72 275.4 195 74.9
vmacro15176 Vaccinium macrocarpon HOM05D004325 ORTHO05D005470 5.7e-72 274.6 235 66.8
A06p38330 Brassica napus HOM05D004325 ORTHO05D005470 1.7e-71 273.1 173 80.3
C07p39920 Brassica napus HOM05D004325 ORTHO05D005470 1.7e-71 273.1 173 80.3
BolC7t44524H Brassica oleracea HOM05D004325 ORTHO05D005470 1.7e-71 273.1 173 80.3
BraA06t26747Z Brassica rapa HOM05D004325 ORTHO05D005470 1.7e-71 273.1 173 80.3
ATR0693G272 Amborella trichopoda HOM05D004325 ORTHO05D005470 3.7e-71 271.9 182 77.5
Hund11985 Selenicereus undatus HOM05D004325 ORTHO05D005470 5.3e-70 268.1 178 77.5
CsaV3_3G015280 Cucumis sativus L. HOM05D004325 ORTHO05D005470 6.9e-70 267.7 186 78.0
FAN12G3971 Fragaria x ananassa HOM05D004325 ORTHO05D005470 1.5e-69 266.5 216 67.6
FAN07G0536 Fragaria x ananassa HOM05D004325 ORTHO05D005470 2.2e-68 262.7 225 64.9
Aqoxy3G01635 Aquilegia oxysepala HOM05D004325 ORTHO05D005470 1.9e-67 259.6 184 76.1
CAN.G945.3 Capsicum annuum HOM05D004325 ORTHO05D005470 1.9e-67 259.6 144 93.8
Lj3A833G34 Lonicera japonica HOM05D004325 ORTHO05D005470 3.2e-67 258.8 168 81.0
Sabra10G0113800 Salix brachista HOM05D004325 ORTHO05D005470 3.2e-67 258.8 233 62.7
SalBow5G2618 Salvia bowleyana HOM05D004325 ORTHO05D005470 2.1e-66 256.1 159 84.3
BolC9t53449H Brassica oleracea HOM05D004325 ORTHO05D005470 5.1e-65 251.5 247 57.9
TWI09G1034 Tripterygium wilfordii HOM05D004325 ORTHO05D005470 2.6e-64 249.2 188 71.8
EL10Ac3g05527 Beta vulgaris HOM05D004325 ORTHO05D005470 2.2e-63 246.1 160 80.6
Nn3g21742 Nelumbo nucifera HOM05D004325 ORTHO05D005470 1.5e-61 240.0 181 71.8
Eucgr.E01999 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.1e-59 233.8 183 71.0
Mapoly0057s0039 Marchantia polymorpha HOM05D004325 ORTHO05D005470 5.5e-59 231.5 180 65.6
SMO116G0307 Selaginella moellendorffii HOM05D004325 ORTHO05D005470 3.9e-57 225.3 181 64.1
GSVIVG01034969001 Vitis vinifera HOM05D004325 ORTHO05D005470 1.1e-56 223.8 135 84.4
SEGI_09014 Sequoiadendron giganteum HOM05D004325 ORTHO05D005470 2.0e-56 223.0 175 65.1
Oeu001162.1 Olea europaea HOM05D004325 ORTHO05D005470 6.3e-55 218.0 136 86.0
TPR.G28959 Trifolium pratense HOM05D004325 ORTHO05D005470 1.8e-54 216.5 138 80.4
AagrBONN_evm.TU.Sc2ySwM_344.4436 Anthoceros agrestis HOM05D004325 ORTHO05D005470 9.1e-54 214.2 173 60.7
CiPaw.01G136700 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.2e-53 213.8 135 80.0
Pp3c8_18130 Physcomitrium patens HOM05D004325 ORTHO05D005470 2.0e-53 213.0 176 61.9
Eucgr.E01982 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.0e-49 198.7 123 85.4
Lalb_Chr13g0298551 Lupinus albus HOM05D004325 ORTHO05D005470 8.8e-49 197.6 136 77.9
CDE12G0495 Ceratophyllum demersum HOM05D004325 ORTHO05D005470 1.2e-48 197.2 124 81.5
HPP92_017247 Vanilla planifolia HOM05D004325 ORTHO05D005470 1.3e-47 193.7 131 78.6
MSTRG.3849 Avicennia marina HOM05D004325 ORTHO05D005470 1.7e-47 193.4 134 73.1
MELO3C006723.2 Cucumis melo HOM05D004325 ORTHO05D005470 1.1e-46 190.7 141 73.0
CiPaw.02G073600 Carya illinoinensis HOM05D004325 ORTHO05D005470 1.2e-45 187.2 208 55.8
Sopen01g024490 Solanum pennellii HOM05D004325 ORTHO05D005470 1.2e-45 187.2 113 86.7
Eucgr.D01598 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.4e-40 169.1 109 82.6
Eucgr.D01586 Eucalyptus grandis HOM05D004325 ORTHO05D005470 3.7e-39 165.6 102 82.4
QL06p012738 Quercus lobata HOM05D004325 ORTHO05D005470 6.3e-39 164.9 98 83.7
Actinidia18462 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.1e-38 164.1 113 77.9
HPP92_017255 Vanilla planifolia HOM05D004325 ORTHO05D005470 9.5e-35 151.0 101 80.2
Eucgr.D01580 Eucalyptus grandis HOM05D004325 ORTHO05D005470 4.7e-34 148.7 99 76.8
PRCOL_00000812 Prasinoderma coloniale HOM05D004325 ORTHO05D005470 4.0e-33 145.6 166 44.6
MCO08G322 Micromonas commoda HOM05D004325 ORTHO05D005470 3.2e-30 136.0 162 43.8
Dinv15146 Davidia involucrata HOM05D004325 ORTHO05D005470 5.4e-30 135.2 102 70.6
Eucgr.D01581 Eucalyptus grandis HOM05D004325 ORTHO05D005470 1.6e-29 133.7 82 82.9
DCAR_026989 Daucus carota HOM05D004325 ORTHO05D005470 5.9e-29 131.7 91 75.8
QL06p012730 Quercus lobata HOM05D004325 ORTHO05D005470 2.9e-28 129.4 86 79.1
Cre06.g261650 Chlamydomonas reinhardtii HOM05D004325 ORTHO05D005470 1.1e-27 127.5 184 38.6
Eucgr.D01577 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.5e-27 126.3 97 70.1
CBR_g12436 Chara braunii HOM05D004325 ORTHO05D005470 6.1e-26 121.7 94 63.8
MBI14_g36884_MAGBIO Magnolia biondii HOM05D004325 ORTHO05D005470 6.1e-26 121.7 113 61.9
Haze_26161 Corylus avellana HOM05D004325 ORTHO05D005470 2.3e-25 119.8 166 39.2
Glyma.17G035301 Glycine max HOM05D004325 ORTHO05D005470 1.7e-23 113.6 99 64.6
Glyma.07G238200 Glycine max HOM05D004325 ORTHO05D005470 3.2e-22 109.4 75 73.3
Actinidia31558 Actinidia chinensis HOM05D004325 ORTHO05D005470 6.6e-20 101.7 66 75.8
Eucgr.E01978 Eucalyptus grandis HOM05D004325 ORTHO05D005470 2.2e-15 86.7 57 75.4
Solyc01g058597.1 Solanum lycopersicum HOM05D004325 ORTHO05D005470 2.7e-13 79.7 47 87.2
CSS0004484 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 1.4e-09 67.4 111 43.2
CSS0039135 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.3e-09 66.6 114 43.0
CSS0044452 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 2.3e-09 66.6 114 43.0
CSS0013046 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 5.2e-09 65.5 114 43.0
CSS0031168 Camellia sinensis var. sinensis HOM05D004325 ORTHO05D022134 8.9e-09 64.7 114 42.1
TPR.G26018 Trifolium pratense HOM05D004325 ORTHO05D049290 8.9e-09 64.7 64 57.8
Actinidia14254 Actinidia chinensis HOM05D004325 ORTHO05D005470 1.7e-07 60.5 36 83.3
TPR.G25439 Trifolium pratense HOM05D004325 ORTHO05D005470 4.9e-07 58.9 115 39.1


User provided reference genes

Program Settings