Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027164 Solanum tuberosum HOM05D005842 ORTHO05D007077 1.5e-40 169.1 89 100.0
Nitab4.5_0001769g0190 Nicotiana tabacum HOM05D005842 ORTHO05D007077 8.2e-34 146.7 88 83.0
CAN.G305.25 Capsicum annuum HOM05D005842 ORTHO05D007077 1.3e-31 139.4 90 82.2
Sopen05g031940 Solanum pennellii HOM05D005842 ORTHO05D007077 2.2e-26 122.1 89 75.3
Peaxi162Scf00164g00112 Petunia axillaris HOM05D005842 ORTHO05D007077 3.1e-25 118.2 73 82.2
Solyc05g053450.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 3.1e-25 118.2 89 74.2
Sopen09g034020 Solanum pennellii HOM05D005842 ORTHO05D007077 6.5e-23 110.5 90 68.9
Migut.N00324 Erythranthe guttata HOM05D005842 ORTHO05D007077 1.1e-22 109.8 87 63.2
Solyc09g091040.3 Solanum lycopersicum HOM05D005842 ORTHO05D007077 1.5e-22 109.4 90 67.8
Actinidia39941 Actinidia chinensis HOM05D005842 ORTHO05D007077 3.2e-22 108.2 87 65.5
PGSC0003DMG404001548 Solanum tuberosum HOM05D005842 ORTHO05D007077 7.2e-22 107.1 90 68.9
Migut.H00813 Erythranthe guttata HOM05D005842 ORTHO05D007077 2.7e-21 105.1 87 62.1
Dinv27137 Davidia involucrata HOM05D005842 ORTHO05D007077 4.7e-21 104.4 89 60.7
Hma1.2p1_0112F.1_g055010 Hydrangea macrophylla HOM05D005842 ORTHO05D007077 6.1e-21 104.0 89 62.9
Actinidia25095 Actinidia chinensis HOM05D005842 ORTHO05D007077 1.4e-20 102.8 87 60.9
Actinidia11383 Actinidia chinensis HOM05D005842 ORTHO05D007077 2.3e-20 102.1 87 62.1
CSS0017402 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 1.5e-19 99.4 88 58.0
CSS0006411 Camellia sinensis var. sinensis HOM05D005842 ORTHO05D007077 5.7e-19 97.4 87 59.8
Nitab4.5_0000867g0010 Nicotiana tabacum HOM05D000404 ORTHO05D001765 1.3e-18 96.3 89 64.0
Cc03_g06880 Coffea canephora HOM05D005842 ORTHO05D007077 1.4e-17 92.8 84 58.3
Cc03_g06890 Coffea canephora HOM05D005842 ORTHO05D007077 1.4e-17 92.8 84 58.3
Cc03_g06900 Coffea canephora HOM05D005842 ORTHO05D007077 1.4e-17 92.8 84 58.3
Cc03_g06910 Coffea canephora HOM05D005842 ORTHO05D007077 1.4e-17 92.8 84 58.3
Cc03_g06920 Coffea canephora HOM05D005842 ORTHO05D007077 1.4e-17 92.8 84 58.3
Cc03_g06930 Coffea canephora HOM05D005842 ORTHO05D007077 1.4e-17 92.8 84 58.3
Cc03_g06940 Coffea canephora HOM05D005842 ORTHO05D007077 1.4e-17 92.8 84 58.3
Cc03_g06950 Coffea canephora HOM05D005842 ORTHO05D007077 1.4e-17 92.8 84 58.3
TAR633G2520 Trochodendron aralioides HOM05D005842 ORTHO05D007077 9.1e-17 90.1 83 56.6
SHI18628 Sapria himalayana HOM05D005842 ORTHO05D007077 1.6e-16 89.4 89 52.8
PSO832G1240 Papaver somniferum HOM05D005842 ORTHO05D007077 2.0e-16 89.0 83 54.2
Cc00_g17210 Coffea canephora HOM05D005842 ORTHO05D007077 3.5e-16 88.2 84 58.3
MD13G1226500 Malus domestica HOM05D005842 ORTHO05D007077 4.5e-16 87.8 89 53.9
Dinv29780 Davidia involucrata HOM05D005842 ORTHO05D007077 5.9e-16 87.4 97 56.7
Glyma.10G130600 Glycine max HOM05D005842 ORTHO05D007077 7.7e-16 87.0 85 55.3
MD16G1231600 Malus domestica HOM05D005842 ORTHO05D007077 1.3e-15 86.3 89 52.8
Ca_26210_v3 Cicer arietinum L. HOM05D005842 ORTHO05D007077 2.3e-15 85.5 91 50.5
Glyma.20G081400 Glycine max HOM05D005842 ORTHO05D007077 2.9e-15 85.1 85 54.1
Dinv29781 Davidia involucrata HOM05D005842 ORTHO05D007077 3.8e-15 84.7 104 52.9
Nn1g03040 Nelumbo nucifera HOM05D005842 ORTHO05D007077 5.0e-15 84.3 83 55.4
ClCG05G003830 Citrullus lanatus HOM05D005842 ORTHO05D007077 6.6e-15 84.0 73 58.9
Sabra10G0043900 Salix brachista HOM05D005842 ORTHO05D007077 6.6e-15 84.0 85 52.9
Prupe.1G053900 Prunus persica HOM05D005842 ORTHO05D007077 8.6e-15 83.6 89 50.6
Atru.chr4.1869 Acer truncatum HOM05D005842 ORTHO05D007077 1.5e-14 82.8 88 53.4
Lj6g0013781 Lotus japonicus HOM05D005842 ORTHO05D007077 1.5e-14 82.8 85 51.8
Potri.010G062800 Populus trichocarpa HOM05D005842 ORTHO05D007077 1.9e-14 82.4 92 51.1
Atru.chr4.1859_Atru.chr4.1858 Acer truncatum HOM05D005842 ORTHO05D007077 3.3e-14 81.6 88 52.3
Atru.chr4.1868 Acer truncatum HOM05D005842 ORTHO05D007077 3.3e-14 81.6 88 52.3
Nn1g03041 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.3e-14 81.6 83 55.4
TWI09G0179 Tripterygium wilfordii HOM05D005842 ORTHO05D007077 7.2e-14 80.5 86 51.2
Peaxi162Scf01007g00004 Petunia axillaris HOM05D005842 ORTHO05D007077 1.2e-13 79.7 87 51.7
Oeu007544.1 Olea europaea HOM05D005842 ORTHO05D007077 2.1e-13 79.0 65 63.1
Sabra10G0084400 Salix brachista HOM05D003281 ORTHO05D004128 4.7e-13 77.8 85 50.6
Sopen12g032850 Solanum pennellii HOM05D005842 ORTHO05D007077 4.7e-13 77.8 86 50.0
Peaxi162Scf00125g01021 Petunia axillaris HOM05D005842 ORTHO05D007077 6.1e-13 77.4 89 56.2
Solyc12g097050.2 Solanum lycopersicum HOM05D005842 ORTHO05D007077 6.1e-13 77.4 86 50.0
TAR362G0228 Trochodendron aralioides HOM05D005842 ORTHO05D007077 3.0e-12 75.1 83 51.8
SalBow2G2733 Salvia bowleyana HOM05D005842 ORTHO05D007077 4.0e-12 74.7 89 49.4
THA.LOC104821628 Tarenaya hassleriana HOM05D005842 ORTHO05D007077 4.0e-12 74.7 89 49.4
Atru.chr13.2235 Acer truncatum HOM05D005842 ORTHO05D007077 5.2e-12 74.3 74 52.7
Lalb_Chr01g0011321 Lupinus albus HOM05D005842 ORTHO05D007077 2.6e-11 72.0 83 51.8
Nn1g03042 Nelumbo nucifera HOM05D005842 ORTHO05D007077 3.4e-11 71.6 83 50.6
Nn1g03039 Nelumbo nucifera HOM05D005842 ORTHO05D007077 4.4e-11 71.2 82 51.2
Phvul.007G233000 Phaseolus vulgaris HOM05D005842 ORTHO05D007077 7.5e-11 70.5 85 48.2
PGSC0003DMG400008623 Solanum tuberosum HOM05D005842 ORTHO05D007077 7.5e-11 70.5 86 47.7
BcaB03g16079 Brassica carinata HOM05D005842 ORTHO05D007077 1.3e-10 69.7 109 41.3
PSO210G3477 Papaver somniferum HOM05D005842 ORTHO05D007077 1.3e-10 69.7 83 44.6
PSO210G4408 Papaver somniferum HOM05D005842 ORTHO05D007077 1.3e-10 69.7 83 44.6
SpUn0225_0010 Schrenkiella parvula HOM05D005842 ORTHO05D007077 1.3e-10 69.7 109 41.3
arahy.Tifrunner.gnm1.ann1.LRUD7W Arachis hypogaea HOM05D005842 ORTHO05D007077 2.8e-10 68.6 85 50.6
arahy.Tifrunner.gnm1.ann1.Q9KDDQ Arachis hypogaea HOM05D005842 ORTHO05D007077 6.3e-10 67.4 85 49.4
PSO764G0017 Papaver somniferum HOM05D005842 ORTHO05D007077 6.3e-10 67.4 83 43.4
Sed0010218 Sechium edule HOM05D005842 ORTHO05D007077 6.3e-10 67.4 80 45.0
BcaC06g35667 Brassica carinata HOM05D003628 ORTHO05D004253 8.3e-10 67.0 74 50.0
PSO384G4311 Papaver somniferum HOM05D005842 ORTHO05D007077 8.3e-10 67.0 83 44.6
arahy.Tifrunner.gnm1.ann1.GMD4I9 Arachis hypogaea HOM05D005842 ORTHO05D007077 1.8e-09 65.9 85 49.4
BcaB06g26603 Brassica carinata HOM05D005842 ORTHO05D007077 1.8e-09 65.9 74 48.6
arahy.Tifrunner.gnm1.ann1.JU0LD9 Arachis hypogaea HOM05D005842 ORTHO05D007077 2.4e-09 65.5 85 49.4
Rhsim09G0044300 Rhododendron simsii HOM05D005842 ORTHO05D007077 3.1e-09 65.1 91 48.4
CsaV3_2G012270 Cucumis sativus L. HOM05D005842 ORTHO05D007077 4.1e-09 64.7 96 41.7
BcaC02g09413 Brassica carinata HOM05D005842 ORTHO05D007077 5.4e-09 64.3 109 39.4
BcaC02g09414 Brassica carinata HOM05D005842 ORTHO05D007077 5.4e-09 64.3 109 39.4
BcaC02g09415 Brassica carinata HOM05D005842 ORTHO05D007077 5.4e-09 64.3 109 39.4
MBI10_g16785_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 5.4e-09 64.3 89 43.8
MBI10_g16786_MAGBIO Magnolia biondii HOM05D005842 ORTHO05D007077 5.4e-09 64.3 89 43.8
PSO384G5008 Papaver somniferum HOM05D005842 ORTHO05D007077 5.4e-09 64.3 83 43.4
C03p53480 Brassica napus HOM05D005842 ORTHO05D007077 9.2e-09 63.5 72 45.8
ATR0787G056 Amborella trichopoda HOM05D005842 ORTHO05D007077 1.2e-08 63.2 86 40.7
Medtr1g045980 Medicago truncatula HOM05D005842 ORTHO05D007077 1.2e-08 63.2 122 33.6
PSO266G0009 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-08 63.2 83 42.2
PSO266G0028 Papaver somniferum HOM05D005842 ORTHO05D007077 1.2e-08 63.2 83 42.2
A04p08620 Brassica napus HOM05D005842 ORTHO05D007077 2.0e-08 62.4 110 40.0
BraA04t16556Z Brassica rapa HOM05D005842 ORTHO05D007077 2.0e-08 62.4 110 40.0
Lalb_Chr19g0128561 Lupinus albus HOM05D005842 ORTHO05D007077 5.9e-08 60.8 58 56.9
HPP92_007287 Vanilla planifolia HOM05D005842 ORTHO05D007077 1.0e-07 60.1 96 39.6
AL7G43170 Arabidopsis lyrata HOM05D005842 ORTHO05D007077 1.7e-07 59.3 109 36.7
MELO3C023065.2 Cucumis melo HOM05D005842 ORTHO05D007077 2.3e-07 58.9 79 43.0
PGR142G0529 Punica granatum HOM05D005842 ORTHO05D007077 2.9e-07 58.5 89 42.7
A07p08140 Brassica napus HOM05D005842 ORTHO05D007077 3.9e-07 58.2 91 41.8
C07p12280 Brassica napus HOM05D005842 ORTHO05D007077 3.9e-07 58.2 91 41.8
BolC7t41695H Brassica oleracea HOM05D005842 ORTHO05D007077 3.9e-07 58.2 91 41.8
BraA07t28597Z Brassica rapa HOM05D005842 ORTHO05D007077 3.9e-07 58.2 91 41.8
CARHR219200 Cardamine hirsuta HOM05D005842 ORTHO05D007077 3.9e-07 58.2 109 37.6
Lalb_Chr03g0036861 Lupinus albus HOM05D005842 ORTHO05D007077 3.9e-07 58.2 61 50.8
Thhalv10026478m.g Eutrema salsugineum HOM05D005842 ORTHO05D007077 6.6e-07 57.4 109 36.7
Cfa014832 Carpinus fangiana HOM05D005842 ORTHO05D007077 8.6e-07 57.0 109 36.7
AT4G13560 Arabidopsis thaliana HOM05D005842 ORTHO05D007077 1.1e-06 56.6 109 35.8
BcaC02g09416 Brassica carinata HOM05D005842 ORTHO05D007077 1.5e-06 56.2 94 39.4
TPR.G23959 Trifolium pratense HOM05D005842 ORTHO05D007077 1.5e-06 56.2 61 49.2
THA.LOC104810501 Tarenaya hassleriana HOM05D008630 ORTHO05D010727 1.9e-06 55.8 89 42.7
BcaB04g17686 Brassica carinata HOM05D005842 ORTHO05D007077 4.3e-06 54.7 109 35.8
BcaC07g37350 Brassica carinata HOM05D005842 ORTHO05D007077 4.3e-06 54.7 109 35.8
TWI18G0017 Tripterygium wilfordii HOM05D008630 ORTHO05D010727 4.3e-06 54.7 83 44.6
Aa31LG9G4090 Aethionema arabicum HOM05D005842 ORTHO05D007077 7.3e-06 53.9 120 32.5
HanXRQChr14g0434231 Helianthus annuus HOM05D005842 ORTHO05D007077 7.3e-06 53.9 87 40.2
C04p42360 Brassica napus HOM05D005842 ORTHO05D007077 9.5e-06 53.5 101 38.6
HPP92_007288 Vanilla planifolia HOM05D005842 ORTHO05D007077 9.5e-06 53.5 94 39.4


User provided reference genes

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