Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027090 Solanum tuberosum HOM05D003929 ORTHO05D004499 7.8e-281 969.9 528 100.0
Solyc06g071470.4 Solanum lycopersicum HOM05D003929 ORTHO05D004499 2.7e-273 944.9 528 97.7
Sopen06g027750 Solanum pennellii HOM05D003929 ORTHO05D004499 6.6e-272 940.3 528 97.7
CAN.G628.79 Capsicum annuum HOM05D003929 ORTHO05D004499 6.2e-254 880.6 531 91.5
Nitab4.5_0001017g0080 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.1e-237 826.6 534 88.6
Peaxi162Scf00017g02914 Petunia axillaris HOM05D003929 ORTHO05D004499 1.8e-205 719.5 535 77.4
Peaxi162Scf00689g00222 Petunia axillaris HOM05D003929 ORTHO05D004499 2.1e-201 706.1 535 75.3
CAN.G781.12 Capsicum annuum HOM05D003929 ORTHO05D004499 3.8e-195 685.3 525 73.7
Nitab4.5_0009783g0030 Nicotiana tabacum HOM05D003929 ORTHO05D004499 6.7e-184 647.9 513 72.9
Nitab4.5_0007719g0020 Nicotiana tabacum HOM05D003929 ORTHO05D004499 1.3e-171 607.1 533 67.9
Nitab4.5_0000003g0590 Nicotiana tabacum HOM05D003929 ORTHO05D004499 4.7e-169 598.6 533 67.4
Dinv20657 Davidia involucrata HOM05D003929 ORTHO05D004499 3.7e-158 562.4 535 64.9
Oeu016382.1 Olea europaea HOM05D003929 ORTHO05D004499 9.2e-157 557.8 523 63.7
SalBow5G2324 Salvia bowleyana HOM05D003929 ORTHO05D004499 9.5e-154 547.7 536 61.8
Solyc03g114330.3 Solanum lycopersicum HOM05D003929 ORTHO05D004499 1.6e-153 547.0 535 62.2
Dinv02898 Davidia involucrata HOM05D003929 ORTHO05D004499 3.5e-148 529.3 527 62.4
MSTRG.11449 Avicennia marina HOM05D003929 ORTHO05D004499 8.6e-147 524.6 521 61.0
QL10p011722 Quercus lobata HOM05D003929 ORTHO05D004499 1.5e-146 523.9 517 62.1
Hma1.2p1_0176F.1_g077430 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.9e-146 523.5 526 61.6
TWI14G0242 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 8.1e-145 518.1 527 60.5
Atru.chr9.2475 Acer truncatum HOM05D003929 ORTHO05D004499 5.2e-144 515.4 538 60.4
Cc04_g14000 Coffea canephora HOM05D003929 ORTHO05D004499 6.8e-144 515.0 526 61.6
DCAR_026132 Daucus carota HOM05D003929 ORTHO05D004499 4.9e-142 508.8 520 63.3
Rhsim08G0171800 Rhododendron simsii HOM05D003929 ORTHO05D004499 9.2e-141 504.6 513 60.2
GSVIVG01007750001 Vitis vinifera HOM05D003929 ORTHO05D004499 2.7e-140 503.1 525 61.1
Duzib068G1333 Durio zibethinus HOM05D003929 ORTHO05D004499 3.5e-140 502.7 526 61.6
Sopen03g033430 Solanum pennellii HOM05D003929 ORTHO05D004499 3.5e-140 502.7 534 58.6
CiPaw.11G026500 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.0e-139 501.1 534 59.0
CSS0017959 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 1.5e-138 497.3 501 61.7
ECA232G3264 Erigeron canadensis HOM05D003929 ORTHO05D004499 2.8e-137 493.0 538 58.7
Cfa019114 Carpinus fangiana HOM05D003929 ORTHO05D004499 6.2e-137 491.9 563 56.5
Migut.I00015 Erythranthe guttata HOM05D003929 ORTHO05D004499 8.1e-137 491.5 528 60.0
Cpa.g.sc770.1 Carica papaya HOM05D003929 ORTHO05D004499 4.0e-136 489.2 535 58.5
Prupe.5G174100 Prunus persica HOM05D003929 ORTHO05D004499 5.8e-135 485.3 526 58.2
Lj5C124G9 Lonicera japonica HOM05D003929 ORTHO05D004499 1.1e-133 481.1 544 56.8
Potri.012G080800 Populus trichocarpa HOM05D003929 ORTHO05D004499 1.9e-133 480.3 526 57.8
Duzib205G0135 Durio zibethinus HOM05D003929 ORTHO05D004499 9.2e-133 478.0 521 57.4
Thecc.03G012300 Theobroma cacao HOM05D003929 ORTHO05D004499 1.2e-132 477.6 538 56.5
FAN13G1321 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.1e-132 476.9 520 58.5
FAN04G3176 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.3e-131 473.4 542 56.6
FAN18G3294 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.5e-130 469.9 521 58.0
FvH4_5g05290 Fragaria vesca HOM05D003929 ORTHO05D004499 3.3e-130 469.5 521 58.2
HanXRQChr16g0504021 Helianthus annuus HOM05D003929 ORTHO05D004499 9.6e-130 468.0 515 59.0
RcHm_v2.0_Chr7g0193581 Rosa chinensis HOM05D003929 ORTHO05D004499 1.6e-129 467.2 517 57.4
FAN18G3765 Fragaria x ananassa HOM05D003929 ORTHO05D004499 2.1e-129 466.8 521 58.0
TWI39G0937 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 4.7e-129 465.7 526 57.2
CiPaw.12G026400 Carya illinoinensis HOM05D003929 ORTHO05D004499 1.1e-128 464.5 523 57.0
TWI31G0970 Tripterygium wilfordii HOM05D003929 ORTHO05D004499 2.0e-127 460.3 526 56.8
Gohir.A12G274000 Gossypium hirsutum HOM05D003929 ORTHO05D004499 3.4e-127 459.5 535 55.9
TAR622G0564 Trochodendron aralioides HOM05D003929 ORTHO05D004499 7.6e-127 458.4 554 54.7
Gohir.D12G274700 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.9e-126 456.4 531 55.9
Gorai.008G295200 Gossypium raimondii HOM05D003929 ORTHO05D004499 2.9e-126 456.4 533 56.1
Potri.015G076100 Populus trichocarpa HOM05D003929 ORTHO05D004499 3.8e-126 456.1 527 56.9
TAR374G1605 Trochodendron aralioides HOM05D003929 ORTHO05D004499 4.9e-126 455.7 542 55.5
Eucgr.B00317 Eucalyptus grandis HOM05D003929 ORTHO05D004499 3.2e-125 453.0 510 55.9
MD14G1180600 Malus domestica HOM05D003929 ORTHO05D004499 9.3e-125 451.4 491 58.9
PGR083G1389 Punica granatum HOM05D003929 ORTHO05D004499 2.1e-124 450.3 516 54.8
CANSAT80G0843 Cannabis sativa HOM05D003929 ORTHO05D004499 6.0e-124 448.7 531 53.9
Haze_07467 Corylus avellana HOM05D003929 ORTHO05D004499 6.0e-124 448.7 612 50.5
Lalb_Chr13g0297821 Lupinus albus HOM05D003929 ORTHO05D004499 7.8e-124 448.4 521 55.1
Lsat_1_v5_gn_4_75281 Lactuca sativa HOM05D003929 ORTHO05D004499 1.0e-123 448.0 511 57.9
Manes.06G104600 Manihot esculenta HOM05D003929 ORTHO05D004499 1.1e-122 444.5 494 58.3
vmacro19383 Vaccinium macrocarpon HOM05D003929 ORTHO05D004499 3.3e-122 443.0 508 53.7
TPR.G37553 Trifolium pratense HOM05D003929 ORTHO05D004499 4.3e-122 442.6 522 54.6
FAN08G2589 Fragaria x ananassa HOM05D003929 ORTHO05D004499 7.3e-122 441.8 521 56.0
SalBow5G2758 Salvia bowleyana HOM05D003929 ORTHO05D004499 4.8e-121 439.1 533 52.0
Manes.14G066000 Manihot esculenta HOM05D003929 ORTHO05D004499 1.4e-120 437.6 535 55.3
Aqoxy3G02955 Aquilegia oxysepala HOM05D003929 ORTHO05D004499 7.6e-119 431.8 511 55.2
MD06G1174100 Malus domestica HOM05D003929 ORTHO05D004499 9.3e-117 424.9 499 55.7
ClCG06G017000 Citrullus lanatus HOM05D003929 ORTHO05D004499 2.1e-116 423.7 537 52.7
VMungo1215G1851 Vigna mungo HOM05D003929 ORTHO05D004499 2.7e-116 423.3 524 55.5
Glyma.06G182600 Glycine max HOM05D003929 ORTHO05D004499 6.0e-116 422.2 520 53.3
Phvul.003G200200 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 8.7e-115 418.3 525 54.3
Hma1.2p1_0000F.1_g000890 Hydrangea macrophylla HOM05D003929 ORTHO05D004499 1.1e-114 417.9 503 54.9
Lj4g0023186 Lotus japonicus HOM05D003929 ORTHO05D004499 1.1e-114 417.9 521 55.3
Medtr4g106880 Medicago truncatula HOM05D003929 ORTHO05D004499 3.3e-114 416.4 495 54.7
Sed0022246 Sechium edule HOM05D003929 ORTHO05D004499 1.3e-113 414.5 546 52.6
Phvul.009G178800 Phaseolus vulgaris HOM05D003929 ORTHO05D004499 4.8e-113 412.5 495 53.1
PSO063G6021 Papaver somniferum HOM05D003929 ORTHO05D004499 4.0e-112 409.5 555 50.1
Nn1g01975 Nelumbo nucifera HOM05D003929 ORTHO05D004499 9.0e-112 408.3 541 51.2
Glyma.17G089700 Glycine max HOM05D003929 ORTHO05D004499 1.2e-111 407.9 522 52.9
SGA_v2.0_scaffold90G27941 Striga asiatica HOM05D003929 ORTHO05D004499 2.6e-111 406.8 538 52.4
arahy.Tifrunner.gnm1.ann1.S02CG0 Arachis hypogaea HOM05D003929 ORTHO05D004499 9.9e-111 404.8 515 51.7
Ca_21916_v3 Cicer arietinum L. HOM05D003929 ORTHO05D004499 1.3e-110 404.4 488 53.9
EL10Ac5g10751 Beta vulgaris HOM05D003929 ORTHO05D004499 6.4e-110 402.1 526 51.1
THA.LOC104821459 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 1.9e-109 400.6 519 53.0
VMungo1309G0717 Vigna mungo HOM05D003929 ORTHO05D004499 2.5e-109 400.2 524 51.3
Carub.0008s2353 Capsella rubella HOM05D003929 ORTHO05D004499 1.2e-108 397.9 492 51.4
AL8G39770 Arabidopsis lyrata HOM05D003929 ORTHO05D004499 2.7e-108 396.7 526 48.5
AT5G62810 Arabidopsis thaliana HOM05D003929 ORTHO05D004499 2.7e-108 396.7 526 49.0
arahy.Tifrunner.gnm1.ann1.R24CC5 Arachis hypogaea HOM05D003929 ORTHO05D004499 3.0e-107 393.3 521 52.0
CsaV3_1G001520 Cucumis sativus L. HOM05D003929 ORTHO05D004499 6.7e-107 392.1 526 50.6
MELO3C026291.2 Cucumis melo HOM05D003929 ORTHO05D004499 1.1e-106 391.3 536 49.6
BcaB02g09694 Brassica carinata HOM05D003929 ORTHO05D004499 4.3e-106 389.4 498 49.8
A06p29570 Brassica napus HOM05D003929 ORTHO05D004499 4.3e-106 389.4 503 48.7
BraA06t25903Z Brassica rapa HOM05D003929 ORTHO05D004499 5.6e-106 389.0 501 48.1
C03p63930 Brassica napus HOM05D003929 ORTHO05D004499 7.4e-106 388.7 505 48.9
Glyma.05G037400 Glycine max HOM05D003929 ORTHO05D004499 9.6e-106 388.3 530 50.9
Hund09434 Selenicereus undatus HOM05D003929 ORTHO05D004499 9.6e-106 388.3 532 51.5
BolC3t18647H Brassica oleracea HOM05D003929 ORTHO05D004499 2.8e-105 386.7 536 47.4
Actinidia19318 Actinidia chinensis HOM05D003929 ORTHO05D004499 3.7e-105 386.3 391 60.9
Thhalv10004017m.g Eutrema salsugineum HOM05D003929 ORTHO05D004499 3.7e-105 386.3 507 49.3
Aa31LG11G880 Aethionema arabicum HOM05D003929 ORTHO05D004499 4.8e-105 386.0 535 47.7
BcaC01g02523 Brassica carinata HOM05D003929 ORTHO05D004499 4.8e-105 386.0 534 47.2
THA.LOC104818232 Tarenaya hassleriana HOM05D003929 ORTHO05D004499 4.8e-105 386.0 522 50.8
Lalb_Chr11g0071231 Lupinus albus HOM05D003929 ORTHO05D004499 1.1e-104 384.8 491 50.5
Lj1g0005514 Lotus japonicus HOM05D003929 ORTHO05D004499 6.9e-104 382.1 513 51.9
Sp2g25960 Schrenkiella parvula HOM05D003929 ORTHO05D004499 2.0e-103 380.6 519 48.2
PSO832G4520 Papaver somniferum HOM05D003929 ORTHO05D004499 5.8e-103 379.0 554 48.2
CARHR276590 Cardamine hirsuta HOM05D003929 ORTHO05D004499 7.6e-103 378.6 527 47.1
MBI10_g41915_MAGBIO Magnolia biondii HOM05D003929 ORTHO05D004499 2.2e-102 377.1 537 50.5
Ciclev10024320m.g Citrus clementina HOM05D003929 ORTHO05D004499 8.4e-102 375.2 422 58.8
BolC9t53798H Brassica oleracea HOM05D003929 ORTHO05D004499 1.4e-101 374.4 513 48.3
A09p07860 Brassica napus HOM05D003929 ORTHO05D004499 2.5e-101 373.6 497 48.1
C09p08860 Brassica napus HOM05D003929 ORTHO05D004499 3.2e-101 373.2 513 48.1
BraA09t36437Z Brassica rapa HOM05D003929 ORTHO05D004499 4.2e-101 372.9 482 49.0
BcaC04g23392 Brassica carinata HOM05D003929 ORTHO05D004499 5.5e-101 372.5 513 48.1
Lalb_Chr07g0182721 Lupinus albus HOM05D003929 ORTHO05D004499 1.1e-98 364.8 524 48.9
Actinidia33066 Actinidia chinensis HOM05D003929 ORTHO05D004499 1.4e-96 357.8 436 53.7
COL.COLO4_30035 Corchorus olitorius HOM05D003929 ORTHO05D004499 3.1e-96 356.7 525 48.4
Migut.D01928 Erythranthe guttata HOM05D003929 ORTHO05D004499 1.5e-95 354.4 516 48.6
arahy.Tifrunner.gnm1.ann1.W2DQVT Arachis hypogaea HOM05D003929 ORTHO05D004499 7.7e-95 352.1 553 47.2
PGR044G0511 Punica granatum HOM05D003929 ORTHO05D004499 8.5e-94 348.6 517 48.4
Ah.11g051630 Amaranthus hybridus HOM05D003618 ORTHO05D004302 2.5e-90 337.0 530 44.7
Psat4g057880 Pisum sativum HOM05D003929 ORTHO05D004499 2.5e-90 337.0 378 55.3
Sc04g0001820 Simmondsia chinensis HOM05D003929 ORTHO05D004499 1.8e-88 330.9 367 58.6
Sed0009068 Sechium edule HOM05D003929 ORTHO05D004499 1.0e-83 315.1 376 54.8
Oeu022163.1 Olea europaea HOM05D003929 ORTHO05D004499 5.1e-83 312.8 268 66.4
CDE05G2632 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 8.8e-83 312.0 531 44.4
AUR62030967 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.4e-82 309.7 536 45.3
Oeu024692.2 Olea europaea HOM05D003929 ORTHO05D004499 7.4e-82 308.9 311 63.7
CDE11G0983 Ceratophyllum demersum HOM05D003929 ORTHO05D004499 2.2e-81 307.4 515 44.5
ATR0730G040 Amborella trichopoda HOM05D003929 ORTHO05D004499 5.0e-78 296.2 505 44.6
HPP92_021833 Vanilla planifolia HOM05D003929 ORTHO05D004499 6.7e-75 285.8 396 50.5
Atru.chr11.2035 Acer truncatum HOM05D003929 ORTHO05D004499 9.1e-72 275.4 445 44.3
AUR62008214 Chenopodium quinoa HOM05D003929 ORTHO05D004499 4.5e-71 273.1 515 41.2
SEGI_11105 Sequoiadendron giganteum HOM05D003929 ORTHO05D004499 3.8e-70 270.0 573 39.1
unitig_749.g13474 Utricularia gibba HOM05D003929 ORTHO05D004499 2.5e-69 267.3 407 42.3
Lj9A449T48 Lonicera japonica HOM05D003929 ORTHO05D004499 5.9e-63 246.1 228 64.5
CSS0023375 Camellia sinensis var. sinensis HOM05D003929 ORTHO05D004499 8.5e-62 242.3 251 61.8
Thecc.02G250700 Theobroma cacao HOM05D003929 ORTHO05D004499 6.1e-60 236.1 392 40.8
Psat4g209200 Pisum sativum HOM05D003929 ORTHO05D004499 6.3e-57 226.1 329 46.8
COL.COLO4_24172 Corchorus olitorius HOM05D003929 ORTHO05D004499 1.1e-53 215.3 374 40.1
Zm00001eb356320 Zea mays HOM05D003929 ORTHO05D004499 3.6e-52 210.3 472 37.9
Gohir.D02G162200 Gossypium hirsutum HOM05D003929 ORTHO05D004499 1.2e-50 205.3 385 37.1
Gohir.A03G139300 Gossypium hirsutum HOM05D003929 ORTHO05D004499 2.6e-50 204.1 386 37.3
Gorai.005G182200 Gossypium raimondii HOM05D003929 ORTHO05D004499 1.3e-49 201.8 385 37.1
Zm00001eb267680 Zea mays HOM05D003929 ORTHO05D004499 8.3e-49 199.1 507 35.9
Hund02741 Selenicereus undatus HOM05D003929 ORTHO05D004499 7.0e-48 196.1 459 37.5
Os05g0101200 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 5.8e-42 176.4 543 33.9
arahy.Tifrunner.gnm1.ann1.49JIZL Arachis hypogaea HOM05D003929 ORTHO05D004499 9.2e-40 169.1 229 50.7
Nitab4.5_0000866g0190 Nicotiana tabacum HOM05D003929 ORTHO05D004499 5.0e-38 163.3 124 79.0
Cfa019127 Carpinus fangiana HOM05D003929 ORTHO05D004499 1.5e-37 161.8 184 56.5
Mapoly0102s0017 Marchantia polymorpha HOM05D003929 ORTHO05D004499 9.5e-37 159.1 556 30.6
FAN24G3310 Fragaria x ananassa HOM05D003929 ORTHO05D004499 8.9e-35 152.5 276 40.6
Zm00001eb126680 Zea mays HOM05D003929 ORTHO05D004499 6.4e-33 146.4 520 31.3
PGSC0003DMG400024502 Solanum tuberosum HOM05D003929 ORTHO05D004499 1.1e-32 145.6 110 78.2
HanXRQChr16g0526511 Helianthus annuus HOM05D004647 ORTHO05D005349 4.1e-32 143.7 196 52.6
PGR044G1312 Punica granatum HOM05D003929 ORTHO05D004499 1.3e-30 138.7 171 48.0
Os01g0107000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.3e-30 137.9 212 42.0
PSO135G0191 Papaver somniferum HOM05D003929 ORTHO05D004499 6.6e-30 136.3 194 48.5
Pp3c15_21860 Physcomitrium patens HOM05D003929 ORTHO05D004499 4.7e-28 130.2 221 40.3
Pp3c9_20380 Physcomitrium patens HOM05D003929 ORTHO05D004499 8.1e-28 129.4 223 39.5
AagrBONN_evm.TU.Sc2ySwM_117.2261 Anthoceros agrestis HOM05D003929 ORTHO05D004499 4.9e-25 120.2 194 42.3
CBR_g3508 Chara braunii HOM05D003929 ORTHO05D004499 3.5e-23 114.0 414 30.2
Lj9A449G50 Lonicera japonica HOM05D003929 ORTHO05D004499 3.6e-20 104.0 118 55.9
SHI17029 Sapria himalayana HOM05D003929 ORTHO05D004499 1.2e-18 99.0 144 43.8
SHI17030 Sapria himalayana HOM05D003929 ORTHO05D004499 4.9e-17 93.6 68 64.7
Actinidia19319 Actinidia chinensis HOM05D003618 ORTHO05D004302 9.3e-16 89.4 187 43.3
ClCG01G013120 Citrullus lanatus HOM05D003929 ORTHO05D004499 3.6e-12 77.4 124 45.2
CBR_g10793 Chara braunii HOM05D027206 ORTHO05D004499 3.4e-10 70.9 100 48.0
CBR_g3506 Chara braunii HOM05D003929 ORTHO05D004499 2.2e-09 68.2 67 50.7
MCO04G191 Micromonas commoda HOM05D003929 ORTHO05D004499 2.9e-09 67.8 64 51.6
Cre10.g454025 Chlamydomonas reinhardtii HOM05D003929 ORTHO05D004499 4.9e-09 67.0 230 32.2
Os05g0578000 Oryza sativa ssp. japonica HOM05D003929 ORTHO05D004499 2.3e-06 58.2 129 38.0
Zm00001eb296750 Zea mays HOM05D003929 ORTHO05D004499 3.0e-06 57.8 111 41.4


User provided reference genes

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