Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027068 Solanum tuberosum HOM05D000237 ORTHO05D001145 1.5e-110 402.9 204 100.0
PGSC0003DMG402006188 Solanum tuberosum HOM05D000237 ORTHO05D001145 6.8e-100 367.5 192 96.4
Sopen01g053610 Solanum pennellii HOM05D000237 ORTHO05D001145 2.0e-99 365.9 192 95.3
Solyc01g111570.3 Solanum lycopersicum HOM05D000237 ORTHO05D001145 1.3e-98 363.2 192 94.3
CAN.G588.76 Capsicum annuum HOM05D000237 ORTHO05D001145 9.9e-75 283.9 188 79.8
Peaxi162Scf00362g00069 Petunia axillaris HOM05D000237 ORTHO05D001145 3.2e-65 252.3 188 72.9
Nitab4.5_0000283g0320 Nicotiana tabacum HOM05D000237 ORTHO05D001145 1.1e-60 237.3 187 72.2
Nitab4.5_0003914g0020 Nicotiana tabacum HOM05D000237 ORTHO05D001145 6.9e-60 234.6 187 69.0
Oeu026677.1 Olea europaea HOM05D000237 ORTHO05D001145 5.1e-31 138.7 176 48.9
Oeu006684.1 Olea europaea HOM05D000237 ORTHO05D001145 4.8e-29 132.1 159 51.6
Migut.B00083 Erythranthe guttata HOM05D000237 ORTHO05D001145 2.0e-27 126.7 200 44.0
MSTRG.19993 Avicennia marina HOM05D000237 ORTHO05D001145 2.6e-27 126.3 180 46.1
Cc09_g10140 Coffea canephora HOM05D000237 ORTHO05D001145 4.5e-27 125.6 173 46.8
MSTRG.16902 Avicennia marina HOM05D000237 ORTHO05D001145 7.2e-25 118.2 187 41.7
ECA234G3036 Erigeron canadensis HOM05D000237 ORTHO05D001145 5.2e-23 112.1 153 46.4
Lsat_1_v5_gn_4_71680 Lactuca sativa HOM05D000237 ORTHO05D001145 3.3e-22 109.4 156 45.5
Hma1.2p1_0163F.1_g072450 Hydrangea macrophylla HOM05D000237 ORTHO05D001145 2.2e-21 106.7 167 44.3
CSS0005743 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 5.3e-20 102.1 189 39.7
HanXRQChr04g0112341 Helianthus annuus HOM05D000237 ORTHO05D001145 2.0e-19 100.1 168 39.3
HanXRQChr10g0300891 Helianthus annuus HOM05D000237 ORTHO05D001145 2.6e-19 99.8 153 44.4
DCAR_003168 Daucus carota HOM05D000237 ORTHO05D001145 4.5e-19 99.0 183 37.7
SGA_v2.0_scaffold58G20369 Striga asiatica HOM05D000237 ORTHO05D001145 4.5e-19 99.0 147 47.6
GSVIVG01024026001 Vitis vinifera HOM05D000237 ORTHO05D001145 5.0e-18 95.5 162 40.7
Lj5A179G80 Lonicera japonica HOM05D000237 ORTHO05D001145 7.2e-17 91.7 158 43.0
Haze_02144 Corylus avellana HOM05D000237 ORTHO05D001145 6.1e-16 88.6 152 39.5
SalBow1G0021 Salvia bowleyana HOM05D000237 ORTHO05D001145 1.8e-15 87.0 195 35.4
CiPaw.05G081900 Carya illinoinensis HOM05D000237 ORTHO05D001145 2.3e-15 86.7 144 40.3
TAR376G0531 Trochodendron aralioides HOM05D000237 ORTHO05D001145 2.3e-15 86.7 193 34.2
Thecc.02G060500 Theobroma cacao HOM05D000237 ORTHO05D001145 8.8e-15 84.7 168 38.7
Cfa005238 Carpinus fangiana HOM05D000237 ORTHO05D001145 1.5e-14 84.0 152 38.2
Duzib052G0867 Durio zibethinus HOM05D000237 ORTHO05D001145 3.3e-14 82.8 167 36.5
Gorai.002G197700 Gossypium raimondii HOM05D000237 ORTHO05D001145 3.3e-14 82.8 168 35.7
Gohir.D01G159400 Gossypium hirsutum HOM05D000237 ORTHO05D001145 4.4e-14 82.4 168 35.7
MSTRG.27639 Avicennia marina HOM05D000237 ORTHO05D001145 5.7e-14 82.0 160 37.5
QL11p050194 Quercus lobata HOM05D000237 ORTHO05D001145 5.7e-14 82.0 171 38.0
Sabra04G0116800 Salix brachista HOM05D000237 ORTHO05D001145 5.7e-14 82.0 157 38.2
Prupe.8G165200 Prunus persica HOM05D000237 ORTHO05D001145 7.5e-14 81.6 183 34.4
Cpa.g.sc37.139 Carica papaya HOM05D000237 ORTHO05D001145 1.3e-13 80.9 178 33.7
EL10Ac9g21383 Beta vulgaris HOM05D000237 ORTHO05D001145 1.7e-13 80.5 197 33.5
CiPaw.06G122200 Carya illinoinensis HOM05D000237 ORTHO05D001145 2.2e-13 80.1 161 39.1
Oeu006683.1 Olea europaea HOM05D000237 ORTHO05D001145 2.2e-13 80.1 146 40.4
DCAR_022809 Daucus carota HOM05D000237 ORTHO05D001145 2.8e-13 79.7 153 37.9
Potri.009G134700 Populus trichocarpa HOM05D000237 ORTHO05D001145 3.7e-13 79.3 161 38.5
Potri.004G175100 Populus trichocarpa HOM05D000237 ORTHO05D001145 4.8e-13 79.0 186 34.4
Gohir.A01G168400 Gossypium hirsutum HOM05D000237 ORTHO05D001145 6.3e-13 78.6 173 34.1
COL.COLO4_17332 Corchorus olitorius HOM05D000237 ORTHO05D001145 1.4e-12 77.4 154 35.1
Duzib132G0397 Durio zibethinus HOM05D000237 ORTHO05D001145 1.8e-12 77.0 177 36.2
PGR142G0871 Punica granatum HOM05D000237 ORTHO05D001145 2.4e-12 76.6 181 35.4
Rhsim05G0060200 Rhododendron simsii HOM05D000237 ORTHO05D001145 5.3e-12 75.5 165 36.4
Manes.04G075980 Manihot esculenta HOM05D000237 ORTHO05D001145 7.0e-12 75.1 195 35.4
Manes.11G094000 Manihot esculenta HOM05D000237 ORTHO05D001145 9.1e-12 74.7 175 33.1
Oeu005711.1 Olea europaea HOM05D000237 ORTHO05D001145 9.1e-12 74.7 168 33.9
PSO675G7812 Papaver somniferum HOM05D000237 ORTHO05D001145 1.6e-11 73.9 180 35.6
Hund00023 Selenicereus undatus HOM05D000237 ORTHO05D001145 1.6e-11 73.9 189 33.9
PSO541G1208 Papaver somniferum HOM05D000237 ORTHO05D001145 2.0e-11 73.6 180 36.1
Ah.01g022970 Amaranthus hybridus HOM05D000237 ORTHO05D001145 2.7e-11 73.2 167 31.7
Sabra09G0104500 Salix brachista HOM05D000237 ORTHO05D001145 4.5e-11 72.4 184 34.8
TWI75G0161 Tripterygium wilfordii HOM05D000237 ORTHO05D001145 1.3e-10 70.9 175 34.9
Ciclev10027936m.g Citrus clementina HOM05D000237 ORTHO05D001145 1.7e-10 70.5 156 32.1
AUR62013035 Chenopodium quinoa HOM05D000237 ORTHO05D001145 2.2e-10 70.1 195 29.7
Eucgr.I01415 Eucalyptus grandis HOM05D000237 ORTHO05D001145 2.2e-10 70.1 189 31.2
MD05G1121300 Malus domestica HOM05D000237 ORTHO05D001145 2.9e-10 69.7 182 34.6
Ca_19070_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 6.5e-10 68.6 161 36.0
arahy.Tifrunner.gnm1.ann1.4SLH2G Arachis hypogaea HOM05D000237 ORTHO05D001145 8.5e-10 68.2 193 33.7
arahy.Tifrunner.gnm1.ann1.RN7VB5 Arachis hypogaea HOM05D000237 ORTHO05D001145 1.5e-09 67.4 193 33.2
Nn6g31994 Nelumbo nucifera HOM05D000237 ORTHO05D001145 1.5e-09 67.4 174 36.2
TAR628G0790 Trochodendron aralioides HOM05D000237 ORTHO05D001145 1.5e-09 67.4 168 33.3
Sc08g0002960 Simmondsia chinensis HOM05D000237 ORTHO05D001145 1.9e-09 67.0 181 33.1
Lalb_Chr19g0139091 Lupinus albus HOM05D000237 ORTHO05D001145 4.2e-09 65.9 171 32.7
CSS0029298 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D001145 1.2e-08 64.3 127 40.9
Atru.chr5.3315 Acer truncatum HOM05D000237 ORTHO05D001145 2.7e-08 63.2 174 31.0
TPR.G39227 Trifolium pratense HOM05D000237 ORTHO05D001145 3.6e-08 62.8 160 37.5
AUR62010043 Chenopodium quinoa HOM05D000237 ORTHO05D001145 4.7e-08 62.4 177 30.5
Lalb_Chr01g0001891 Lupinus albus HOM05D000237 ORTHO05D001145 1.4e-07 60.8 183 33.3
RcHm_v2.0_Chr6g0251891 Rosa chinensis HOM05D000237 ORTHO05D001145 2.3e-07 60.1 194 29.4
FAN27G2685 Fragaria x ananassa HOM05D000237 ORTHO05D001145 4.0e-07 59.3 185 30.8
vmacro17350 Vaccinium macrocarpon HOM05D000237 ORTHO05D001145 5.2e-07 58.9 222 30.2
Psat7g175880 Pisum sativum HOM05D000237 ORTHO05D001145 6.8e-07 58.5 178 32.6
FvH4_2g01230 Fragaria vesca HOM05D000237 ORTHO05D001145 8.8e-07 58.2 185 31.9
ClCG02G011910 Citrullus lanatus HOM05D000237 ORTHO05D001145 1.5e-06 57.4 147 32.0
Phvul.011G035600 Phaseolus vulgaris HOM05D000237 ORTHO05D001145 1.5e-06 57.4 173 32.9
FAN20G0987 Fragaria x ananassa HOM05D000237 ORTHO05D001145 2.6e-06 56.6 185 29.7
CANSAT25G0515 Cannabis sativa HOM05D000237 ORTHO05D001145 3.4e-06 56.2 184 30.4
Nn5g30781 Nelumbo nucifera HOM05D000237 ORTHO05D001145 3.4e-06 56.2 168 32.7
Sed0008557 Sechium edule HOM05D000237 ORTHO05D001145 3.4e-06 56.2 161 32.9
MELO3C020817.2 Cucumis melo HOM05D000237 ORTHO05D001145 4.4e-06 55.8 143 31.5
CsaV3_2G016090 Cucumis sativus L. HOM05D000237 ORTHO05D001145 7.5e-06 55.1 143 30.8
Glyma.11G108000 Glycine max HOM05D000237 ORTHO05D001145 7.5e-06 55.1 165 32.7
FAN24G0311 Fragaria x ananassa HOM05D000237 ORTHO05D001145 9.8e-06 54.7 185 31.4


User provided reference genes

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