Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027062 Solanum tuberosum HOM05D003493 ORTHO05D003980 1.1e-307 1059.3 619 100.0
Sopen06g028400 Solanum pennellii HOM05D003493 ORTHO05D003980 3.6e-293 1011.1 619 91.3
Solyc06g072110.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 7.9e-293 1010.0 619 91.0
CAN.G65.58 Capsicum annuum HOM05D003493 ORTHO05D003980 1.5e-270 936.0 619 84.8
Nitab4.5_0000854g0120 Nicotiana tabacum HOM05D003493 ORTHO05D003980 3.1e-265 918.3 623 84.4
Nitab4.5_0000477g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 6.5e-263 910.6 623 86.7
Peaxi162Scf00643g00431 Petunia axillaris HOM05D003493 ORTHO05D003980 3.3e-238 828.6 621 76.3
PGSC0003DMG400015207 Solanum tuberosum HOM05D003493 ORTHO05D003980 4.4e-174 615.5 632 56.3
Sopen03g029860 Solanum pennellii HOM05D003493 ORTHO05D003980 1.4e-169 600.5 630 55.1
Peaxi162Scf01390g00035 Petunia axillaris HOM05D003493 ORTHO05D003980 6.1e-168 595.1 630 53.8
Nitab4.5_0004170g0020 Nicotiana tabacum HOM05D003493 ORTHO05D003980 1.1e-166 590.9 627 55.2
Solyc03g019770.4 Solanum lycopersicum HOM05D003493 ORTHO05D003980 9.1e-164 581.3 612 54.7
Nitab4.5_0003367g0050 Nicotiana tabacum HOM05D003493 ORTHO05D003980 4.8e-149 532.3 620 51.3
CAN.G861.8 Capsicum annuum HOM05D003493 ORTHO05D003980 1.2e-144 517.7 695 47.1
Cc04_g13620 Coffea canephora HOM05D003493 ORTHO05D003980 2.6e-142 510.0 627 47.2
Hma1.2p1_0807F.1_g221460 Hydrangea macrophylla HOM05D003493 ORTHO05D003980 2.6e-142 510.0 626 52.4
Actinidia06838 Actinidia chinensis HOM05D003493 ORTHO05D003980 2.2e-141 506.9 635 48.2
Dinv11742 Davidia involucrata HOM05D003493 ORTHO05D003980 6.6e-138 495.4 627 48.3
Lj5A169T97 Lonicera japonica HOM05D003493 ORTHO05D003980 6.6e-138 495.4 624 47.1
CSS0005530 Camellia sinensis var. sinensis HOM05D003493 ORTHO05D003980 1.5e-134 484.2 632 47.8
Manes.02G118200 Manihot esculenta HOM05D003493 ORTHO05D003980 3.7e-133 479.6 623 45.3
TAR622G0755 Trochodendron aralioides HOM05D003493 ORTHO05D003980 8.3e-133 478.4 630 45.9
Sabra17G0126700 Salix brachista HOM05D003493 ORTHO05D003980 3.0e-130 469.9 623 45.3
Potri.017G155000 Populus trichocarpa HOM05D003493 ORTHO05D003980 3.9e-130 469.5 624 45.4
Manes.01G159600 Manihot esculenta HOM05D003493 ORTHO05D003980 9.5e-129 464.9 623 44.6
Duzib192G0928 Durio zibethinus HOM05D003493 ORTHO05D003980 3.6e-128 463.0 621 45.2
CANSAT80G2441 Cannabis sativa HOM05D003493 ORTHO05D003980 1.1e-127 461.5 624 45.5
Eucgr.H00671 Eucalyptus grandis HOM05D003493 ORTHO05D003980 6.8e-127 458.8 629 44.2
Prupe.5G246400 Prunus persica HOM05D003493 ORTHO05D003980 6.8e-127 458.8 619 44.6
MSTRG.23219 Avicennia marina HOM05D003493 ORTHO05D003980 2.0e-126 457.2 623 46.1
Potri.018G152400 Populus trichocarpa HOM05D003493 ORTHO05D003980 1.7e-125 454.1 624 46.3
RcHm_v2.0_Chr7g0176841 Rosa chinensis HOM05D003493 ORTHO05D003980 1.7e-125 454.1 623 44.5
SalBow5G1620 Salvia bowleyana HOM05D003493 ORTHO05D003980 1.7e-125 454.1 625 46.2
Atru.chr9.57 Acer truncatum HOM05D003493 ORTHO05D003980 3.7e-125 453.0 623 44.8
Duzib235G1490 Durio zibethinus HOM05D003493 ORTHO05D003980 6.4e-125 452.2 619 44.4
Thecc.06G006900 Theobroma cacao HOM05D003493 ORTHO05D003980 1.9e-124 450.7 621 44.1
TWI81G0199 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 3.5e-123 446.4 607 45.3
Gorai.009G116400 Gossypium raimondii HOM05D003493 ORTHO05D003980 1.3e-122 444.5 623 45.4
MD14G1000100 Malus domestica HOM05D003493 ORTHO05D003980 1.3e-122 444.5 622 44.5
Gohir.A05G111700 Gossypium hirsutum HOM05D003493 ORTHO05D003980 1.7e-122 444.1 623 43.7
FvH4_5g18670 Fragaria vesca HOM05D003493 ORTHO05D003980 3.0e-122 443.4 627 43.9
Gohir.D05G112200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 3.9e-122 443.0 623 45.3
Lj9A410T67 Lonicera japonica HOM05D003493 ORTHO05D003980 5.0e-122 442.6 624 43.6
Ciclev10019478m.g Citrus clementina HOM05D003493 ORTHO05D003980 6.6e-122 442.2 636 43.7
FAN18G2761 Fragaria x ananassa HOM05D003493 ORTHO05D003980 1.5e-121 441.0 627 43.7
FAN08G2984 Fragaria x ananassa HOM05D003493 ORTHO05D003980 4.3e-121 439.5 623 43.7
TWI36G1567 Tripterygium wilfordii HOM05D003493 ORTHO05D003980 7.3e-121 438.7 600 43.7
Aqoxy3G04358 Aquilegia oxysepala HOM05D003493 ORTHO05D003980 3.6e-120 436.4 629 43.9
FAN04G2252 Fragaria x ananassa HOM05D003493 ORTHO05D003980 3.6e-120 436.4 627 43.4
Glyma.10G174700 Glycine max HOM05D003493 ORTHO05D003980 3.1e-119 433.3 629 42.9
Lj2g0009881 Lotus japonicus HOM05D003493 ORTHO05D003980 2.0e-118 430.6 603 46.9
Cfa017818 Carpinus fangiana HOM05D003493 ORTHO05D003980 1.7e-117 427.6 639 41.8
GSVIVG01024229001 Vitis vinifera HOM05D003493 ORTHO05D003980 8.3e-117 425.2 630 41.9
Glyma.09G160200 Glycine max HOM05D003493 ORTHO05D003980 1.9e-116 424.1 620 43.4
Lalb_Chr14g0370061 Lupinus albus HOM05D003493 ORTHO05D003980 2.4e-116 423.7 643 41.7
Migut.O00291 Erythranthe guttata HOM05D003493 ORTHO05D003980 4.1e-116 422.9 640 43.9
Nn3g18516 Nelumbo nucifera HOM05D003493 ORTHO05D003980 4.1e-116 422.9 627 43.2
CiPaw.16G076700 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.1e-115 420.6 632 41.1
Sc12g0007780 Simmondsia chinensis HOM05D003493 ORTHO05D003980 3.5e-115 419.9 622 42.0
Glyma.16G209600 Glycine max HOM05D003493 ORTHO05D003980 1.0e-114 418.3 625 41.9
Haze_18391 Corylus avellana HOM05D003493 ORTHO05D003980 3.0e-114 416.8 637 41.6
SGA_v2.0_scaffold25G10715 Striga asiatica HOM05D003493 ORTHO05D003980 5.1e-114 416.0 688 40.0
Aa31LG7G2640 Aethionema arabicum HOM05D003493 ORTHO05D003980 7.3e-113 412.1 627 41.5
arahy.Tifrunner.gnm1.ann1.ZVJ3VC Arachis hypogaea HOM05D003493 ORTHO05D003980 1.2e-112 411.4 639 39.9
Lj5g0000329 Lotus japonicus HOM05D003493 ORTHO05D003980 1.6e-112 411.0 623 41.9
PSO782G2561 Papaver somniferum HOM05D003493 ORTHO05D003980 2.8e-112 410.2 613 44.5
Lalb_Chr06g0168711 Lupinus albus HOM05D003493 ORTHO05D003980 8.1e-112 408.7 632 42.1
PSO063G3260 Papaver somniferum HOM05D003493 ORTHO05D003980 6.8e-111 405.6 613 43.7
TPR.G8860 Trifolium pratense HOM05D003493 ORTHO05D003980 8.9e-111 405.2 615 41.5
VMungo0464G0665 Vigna mungo HOM05D003493 ORTHO05D003980 8.9e-111 405.2 466 48.9
Psat6g054360 Pisum sativum HOM05D003493 ORTHO05D003980 2.0e-110 404.1 625 40.5
MBI06_g37980_MAGBIO Magnolia biondii HOM05D003493 ORTHO05D003980 3.4e-110 403.3 623 40.9
PGR083G2526 Punica granatum HOM05D003493 ORTHO05D003980 3.8e-109 399.8 637 43.0
AUR62041605 Chenopodium quinoa HOM05D003493 ORTHO05D003980 8.4e-109 398.7 614 40.4
BcaC07g41354 Brassica carinata HOM05D003493 ORTHO05D003980 1.2e-107 394.8 624 43.1
VMungo0720G0805 Vigna mungo HOM05D003493 ORTHO05D003980 2.7e-107 393.7 640 40.0
Gohir.A06G181400 Gossypium hirsutum HOM05D003493 ORTHO05D003980 4.6e-107 392.9 613 41.4
Lalb_Chr21g0311711 Lupinus albus HOM05D003493 ORTHO05D003980 4.6e-107 392.9 457 48.6
THA.LOC104812198 Tarenaya hassleriana HOM05D003493 ORTHO05D003980 4.6e-107 392.9 630 40.6
Gohir.D06G188200 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.3e-106 390.6 608 40.5
Gorai.010G220600 Gossypium raimondii HOM05D003493 ORTHO05D003980 2.3e-106 390.6 608 40.5
EL10Ac8g19467 Beta vulgaris HOM05D003493 ORTHO05D003980 6.6e-106 389.0 626 40.6
Medtr6g066300 Medicago truncatula HOM05D003493 ORTHO05D003980 6.6e-106 389.0 632 40.5
Sp1g15900 Schrenkiella parvula HOM05D003493 ORTHO05D003980 1.1e-105 388.3 634 39.6
Thhalv10006829m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 2.5e-105 387.1 628 40.4
ClCG01G014650 Citrullus lanatus HOM05D003493 ORTHO05D003980 7.3e-105 385.6 622 39.7
Phvul.004G135600 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 1.6e-104 384.4 453 47.2
Medtr1g077470 Medicago truncatula HOM05D003493 ORTHO05D003980 3.6e-104 383.3 628 40.1
C08p43630 Brassica napus HOM05D003493 ORTHO05D003980 6.2e-104 382.5 621 42.7
BolC8t51909H Brassica oleracea HOM05D003493 ORTHO05D003980 6.2e-104 382.5 621 42.7
AL1G30180 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 8.1e-104 382.1 642 39.4
A09p60190 Brassica napus HOM05D003493 ORTHO05D003980 1.4e-103 381.3 620 43.9
Lsat_1_v5_gn_0_10721 Lactuca sativa HOM05D003493 ORTHO05D003980 1.4e-103 381.3 637 39.6
AT1G17820 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.8e-103 380.9 630 44.3
arahy.Tifrunner.gnm1.ann1.W71D15 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.8e-103 380.9 693 36.9
Sed0011518 Sechium edule HOM05D003493 ORTHO05D003980 1.8e-103 380.9 607 39.7
TPR.G8876 Trifolium pratense HOM05D003493 ORTHO05D003980 1.8e-103 380.9 630 41.7
CARHR018430 Cardamine hirsuta HOM05D003493 ORTHO05D003980 4.0e-103 379.8 633 39.2
C05p16200 Brassica napus HOM05D003493 ORTHO05D003980 5.2e-103 379.4 619 38.4
BraA09t41388Z Brassica rapa HOM05D003493 ORTHO05D003980 1.2e-102 378.3 620 42.7
Carub.0001s1755 Capsella rubella HOM05D003493 ORTHO05D003980 2.6e-102 377.1 638 38.7
Zm00001eb190790 Zea mays HOM05D003493 ORTHO05D003980 2.2e-101 374.0 614 39.6
MELO3C002186.2 Cucumis melo HOM05D003493 ORTHO05D003980 6.4e-101 372.5 620 39.8
Os02g0827500 Oryza sativa ssp. japonica HOM05D003493 ORTHO05D003980 1.1e-100 371.7 621 39.0
BolC5t30322H Brassica oleracea HOM05D003493 ORTHO05D003980 1.9e-100 370.9 626 41.1
BraA06t24529Z Brassica rapa HOM05D003493 ORTHO05D003980 3.2e-100 370.2 627 41.0
Sp5g28170 Schrenkiella parvula HOM05D003493 ORTHO05D003980 3.2e-100 370.2 632 37.7
BcaB07g34006 Brassica carinata HOM05D003493 ORTHO05D003980 7.1e-100 369.0 622 41.3
A06p13880 Brassica napus HOM05D003493 ORTHO05D003980 7.1e-100 369.0 620 40.8
HanXRQChr15g0492171 Helianthus annuus HOM05D003493 ORTHO05D003980 1.2e-99 368.2 626 43.5
ECA232G4824 Erigeron canadensis HOM05D003493 ORTHO05D003980 1.6e-99 367.9 418 47.6
Ca_09923_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 2.7e-99 367.1 413 49.6
CsaV3_1G007680 Cucumis sativus L. HOM05D003493 ORTHO05D003980 3.5e-99 366.7 629 39.1
Thhalv10018153m.g Eutrema salsugineum HOM05D003493 ORTHO05D003980 3.5e-99 366.7 629 38.0
C06p47340 Brassica napus HOM05D003493 ORTHO05D003980 3.0e-98 363.6 621 37.0
HanXRQChr08g0220881 Helianthus annuus HOM05D003493 ORTHO05D003980 3.9e-98 363.2 420 45.7
Psat1g117720 Pisum sativum HOM05D003493 ORTHO05D003980 5.6e-97 359.4 658 39.1
BolC6t39773H Brassica oleracea HOM05D003493 ORTHO05D003980 3.6e-96 356.7 626 36.6
A07p39150 Brassica napus HOM05D003493 ORTHO05D003980 1.1e-95 355.1 621 37.7
Carub.0002s1999 Capsella rubella HOM05D003493 ORTHO05D003980 1.4e-95 354.8 632 36.4
AL2G32970 Arabidopsis lyrata HOM05D003493 ORTHO05D003980 1.8e-95 354.4 627 37.2
AT1G73200 Arabidopsis thaliana HOM05D003493 ORTHO05D003980 1.8e-95 354.4 627 37.6
CARHR066210 Cardamine hirsuta HOM05D003493 ORTHO05D003980 2.4e-95 354.0 629 37.5
FAN13G0815 Fragaria x ananassa HOM05D003493 ORTHO05D003980 4.0e-95 353.2 819 33.5
ATR0124G004 Amborella trichopoda HOM05D003493 ORTHO05D003980 2.6e-94 350.5 631 37.2
arahy.Tifrunner.gnm1.ann1.W0PAIX Arachis hypogaea HOM05D003493 ORTHO05D003980 2.6e-94 350.5 614 40.2
BraA07t31464Z Brassica rapa HOM05D003493 ORTHO05D003980 2.6e-94 350.5 627 37.5
QL10p035454 Quercus lobata HOM05D003493 ORTHO05D003980 2.2e-93 347.4 370 50.3
QL10p036794 Quercus lobata HOM05D003493 ORTHO05D003980 2.2e-93 347.4 370 50.3
AUR62040635 Chenopodium quinoa HOM05D003493 ORTHO05D003980 2.9e-93 347.1 614 37.0
Oeu063704.1 Olea europaea HOM05D003493 ORTHO05D003980 1.9e-92 344.4 378 51.6
Aa31LG4G3480 Aethionema arabicum HOM05D003493 ORTHO05D003980 2.7e-91 340.5 476 41.6
C02p30730 Brassica napus HOM05D003493 ORTHO05D003980 1.3e-90 338.2 610 36.6
BolC2t09128H Brassica oleracea HOM05D003493 ORTHO05D003980 3.3e-89 333.6 610 37.4
arahy.Tifrunner.gnm1.ann1.K1F8KI Arachis hypogaea HOM05D003493 ORTHO05D003980 3.7e-88 330.1 656 37.7
BraA02t06893Z Brassica rapa HOM05D003493 ORTHO05D003980 1.4e-87 328.2 421 43.9
A02p18540 Brassica napus HOM05D003493 ORTHO05D003980 1.8e-87 327.8 421 43.9
Gohir.A05G111401 Gossypium hirsutum HOM05D003493 ORTHO05D003980 2.9e-85 320.5 436 45.2
Phvul.L006701 Phaseolus vulgaris HOM05D003493 ORTHO05D003980 5.5e-84 316.2 382 46.9
CDE07G1702 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 7.9e-83 312.4 608 33.6
Zm00001eb228970 Zea mays HOM05D003493 ORTHO05D003980 1.0e-82 312.0 302 52.0
BcaNung05482 Brassica carinata HOM05D003493 ORTHO05D003980 3.9e-82 310.1 622 38.4
CDE04G1302 Ceratophyllum demersum HOM05D003493 ORTHO05D003980 3.7e-80 303.5 615 37.1
Ca_25303_v3 Cicer arietinum L. HOM05D003493 ORTHO05D003980 3.2e-68 263.8 623 39.5
Hund06742 Selenicereus undatus HOM05D003493 ORTHO05D001641 1.3e-64 251.9 711 32.1
Oeu034418.1 Olea europaea HOM05D003493 ORTHO05D003980 8.5e-61 239.2 319 45.5
DCAR_011395 Daucus carota HOM05D003493 ORTHO05D003980 6.1e-59 233.0 332 43.1
vmacro17772 Vaccinium macrocarpon HOM05D003493 ORTHO05D003980 1.4e-55 221.9 273 47.6
Lj9C232G5 Lonicera japonica HOM05D003493 ORTHO05D003980 2.6e-54 217.6 314 43.9
DCAR_011394 Daucus carota HOM05D003493 ORTHO05D003980 4.2e-52 210.3 280 45.0
Mapoly0036s0110 Marchantia polymorpha HOM05D003493 ORTHO05D003980 9.4e-52 209.1 639 27.7
Oeu034417.1 Olea europaea HOM05D003493 ORTHO05D003980 2.1e-51 208.0 272 47.1
AagrBONN_evm.TU.Sc2ySwM_368.2475 Anthoceros agrestis HOM05D003493 ORTHO05D003980 2.7e-51 207.6 312 35.9
CAN.G14.48 Capsicum annuum HOM05D003493 ORTHO05D003980 3.9e-50 203.8 156 70.5
Peaxi162Scf00050g00625 Petunia axillaris HOM05D000386 ORTHO05D000406 2.5e-44 184.5 118 81.4
SMO361G0167 Selaginella moellendorffii HOM05D003493 ORTHO05D003980 5.5e-44 183.3 328 34.8
Pp3c1_25660 Physcomitrium patens HOM05D003493 ORTHO05D003980 6.7e-42 176.4 285 33.0
Pp3c5_12280 Physcomitrium patens HOM05D003493 ORTHO05D003980 3.7e-40 170.6 286 33.2
Pp3c6_14220 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.4e-39 168.7 314 31.8
Pp3c17_10430 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.8e-39 168.3 341 30.8
Pp3c14_11980 Physcomitrium patens HOM05D003493 ORTHO05D003980 1.7e-37 161.8 537 24.4
COL.COLO4_22901 Corchorus olitorius HOM05D003493 ORTHO05D003980 6.8e-34 149.8 376 33.8
CiPaw.15G108800 Carya illinoinensis HOM05D003493 ORTHO05D003980 2.9e-29 134.4 279 37.6
Rhsim05G0011100 Rhododendron simsii HOM05D003493 ORTHO05D003980 5.0e-29 133.7 148 49.3
arahy.Tifrunner.gnm1.ann1.Y1U1WE Arachis hypogaea HOM05D003493 ORTHO05D003980 4.7e-27 127.1 399 29.3
Cpa.g.c43819 Carica papaya HOM05D003493 ORTHO05D003980 1.4e-26 125.6 101 61.4
SEGI_25111 Sequoiadendron giganteum HOM05D003493 ORTHO05D003980 6.8e-26 123.2 281 33.1
arahy.Tifrunner.gnm1.ann1.LRB6U9 Arachis hypogaea HOM05D003493 ORTHO05D003980 1.5e-25 122.1 191 41.4
arahy.Tifrunner.gnm1.ann1.PSQB2R Arachis hypogaea HOM05D003493 ORTHO05D003980 1.4e-23 115.5 157 45.9
arahy.Tifrunner.gnm1.ann1.AF40JB Arachis hypogaea HOM05D003493 ORTHO05D003980 2.4e-23 114.8 157 45.2
Cpa.g.sc829.1 Carica papaya HOM05D003493 ORTHO05D003980 5.4e-23 113.6 262 33.2
Cpa.g.c34760 Carica papaya HOM05D003493 ORTHO05D003980 1.9e-20 105.1 65 69.2
QL10p036801 Quercus lobata HOM05D003493 ORTHO05D003980 5.6e-20 103.6 249 32.5
Hund22361 Selenicereus undatus HOM05D003493 ORTHO05D003980 3.6e-19 100.9 94 50.0
arahy.Tifrunner.gnm1.ann1.XZC4F6 Arachis hypogaea HOM05D003493 ORTHO05D003980 7.0e-15 86.7 90 45.6
CiPaw.15G108700 Carya illinoinensis HOM05D003493 ORTHO05D003980 1.3e-13 82.4 159 34.0
QL10p035447 Quercus lobata HOM05D003493 ORTHO05D003980 1.7e-13 82.0 232 30.2
BcaC07g41355 Brassica carinata HOM05D003493 ORTHO05D003980 3.3e-12 77.8 94 51.1
arahy.Tifrunner.gnm1.ann1.XN9UYN Arachis hypogaea HOM05D003493 ORTHO05D003980 1.2e-11 75.9 111 36.9
CAN.G852.8 Capsicum annuum HOM05D003493 ORTHO05D003980 1.2e-11 75.9 74 54.1
arahy.Tifrunner.gnm1.ann1.PE1W7W Arachis hypogaea HOM05D003493 ORTHO05D003980 2.8e-11 74.7 72 45.8
Ca_25290_v3 Cicer arietinum L. HOM05D003493 ORTHO05D015411 2.8e-11 74.7 42 76.2
MCO11G907 Micromonas commoda HOM05D003493 ORTHO05D003980 2.3e-10 71.6 294 24.1


User provided reference genes

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