Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400027040 Solanum tuberosum HOM05D005222 ORTHO05D006230 4.5e-52 207.6 101 100.0
Solyc06g072600.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 8.7e-32 140.2 101 73.3
Sopen06g028950 Solanum pennellii HOM05D005222 ORTHO05D006230 8.7e-32 140.2 101 73.3
CAN.G65.111 Capsicum annuum HOM05D005222 ORTHO05D006230 1.6e-30 136.0 101 69.3
Peaxi162Scf01064g00238 Petunia axillaris HOM05D005222 ORTHO05D006230 1.6e-30 136.0 101 70.3
DCAR_016362 Daucus carota HOM05D005222 ORTHO05D006230 1.5e-28 129.4 101 62.4
Lsat_1_v5_gn_4_83361 Lactuca sativa HOM05D005222 ORTHO05D006230 3.4e-28 128.3 101 65.3
HanXRQChr09g0273701 Helianthus annuus HOM05D005222 ORTHO05D006230 5.9e-28 127.5 101 64.4
Sc04g0000390 Simmondsia chinensis HOM05D005222 ORTHO05D006230 1.3e-27 126.3 101 63.4
Sabra12G0075900 Salix brachista HOM05D005222 ORTHO05D006230 2.2e-27 125.6 115 59.1
Sc22g0003810 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.2e-27 125.6 101 63.4
Dinv23190 Davidia involucrata HOM05D005222 ORTHO05D006230 2.9e-27 125.2 101 65.3
TWI23G0048 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 2.9e-27 125.2 101 64.4
CAN.G758.13 Capsicum annuum HOM05D005222 ORTHO05D006230 3.8e-27 124.8 101 63.4
MD06G1135800 Malus domestica HOM05D005222 ORTHO05D006230 5.0e-27 124.4 101 61.4
Nitab4.5_0001464g0100 Nicotiana tabacum HOM05D005222 ORTHO05D006230 6.5e-27 124.0 101 63.4
TWI39G0019 Tripterygium wilfordii HOM05D005222 ORTHO05D006230 8.5e-27 123.6 101 63.4
Actinidia25544 Actinidia chinensis HOM05D005222 ORTHO05D006230 1.1e-26 123.2 99 61.6
Nn3g16353 Nelumbo nucifera HOM05D005222 ORTHO05D006230 1.1e-26 123.2 101 63.4
Potri.015G102000 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.1e-26 123.2 101 63.4
Sabra15G0122200 Salix brachista HOM05D005222 ORTHO05D006230 1.1e-26 123.2 101 63.4
FAN18G1799 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.4e-26 122.9 101 60.4
MD14G1151000 Malus domestica HOM05D005222 ORTHO05D006230 1.4e-26 122.9 101 60.4
Nitab4.5_0011312g0030 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.4e-26 122.9 101 62.4
Potri.012G103400 Populus trichocarpa HOM05D005222 ORTHO05D006230 1.4e-26 122.9 101 63.4
SalBow5G1462 Salvia bowleyana HOM05D005222 ORTHO05D006230 1.9e-26 122.5 97 63.9
Cfa018742 Carpinus fangiana HOM05D005222 ORTHO05D006230 2.5e-26 122.1 101 61.4
Peaxi162Scf00516g00032 Petunia axillaris HOM05D005222 ORTHO05D006230 2.5e-26 122.1 102 63.7
Prupe.5G146200 Prunus persica HOM05D005222 ORTHO05D006230 3.2e-26 121.7 101 59.4
PGSC0003DMG400004338 Solanum tuberosum HOM05D005222 ORTHO05D006230 3.2e-26 121.7 102 63.7
PGR083G1056 Punica granatum HOM05D005222 ORTHO05D006230 4.2e-26 121.3 100 63.0
Eucgr.B00077 Eucalyptus grandis HOM05D005222 ORTHO05D006230 5.5e-26 120.9 101 62.4
ECA232G5061 Erigeron canadensis HOM05D005222 ORTHO05D006230 7.2e-26 120.6 101 61.4
Rhsim08G0194200 Rhododendron simsii HOM05D005222 ORTHO05D006230 7.2e-26 120.6 99 59.6
EL10Ac5g11344 Beta vulgaris HOM05D005222 ORTHO05D006230 9.4e-26 120.2 101 59.4
Dinv11207 Davidia involucrata HOM05D005222 ORTHO05D006230 1.6e-25 119.4 101 60.4
FAN08G1832 Fragaria x ananassa HOM05D005222 ORTHO05D006230 1.6e-25 119.4 101 58.4
MBI07_g24748_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 1.6e-25 119.4 101 61.4
Haze_07194 Corylus avellana HOM05D005222 ORTHO05D006230 2.1e-25 119.0 69 78.3
Gohir.A12G192500 Gossypium hirsutum HOM05D005222 ORTHO05D006230 2.1e-25 119.0 101 61.4
Hma1.2p1_0168F.1_g074260 Hydrangea macrophylla HOM05D005222 ORTHO05D006230 2.1e-25 119.0 101 59.4
Manes.14G047400 Manihot esculenta HOM05D005222 ORTHO05D006230 2.1e-25 119.0 101 61.4
Manes.06G123800 Manihot esculenta HOM05D005222 ORTHO05D006230 2.7e-25 118.6 101 62.4
Sopen03g028390 Solanum pennellii HOM05D005222 ORTHO05D006230 2.7e-25 118.6 102 61.8
CANSAT80G0210 Cannabis sativa HOM05D005222 ORTHO05D006230 3.6e-25 118.2 99 58.6
CiPaw.11G003300 Carya illinoinensis HOM05D005222 ORTHO05D006230 3.6e-25 118.2 101 60.4
CsaV3_1G000290 Cucumis sativus L. HOM05D005222 ORTHO05D006230 3.6e-25 118.2 98 60.2
FAN13G0479 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.6e-25 118.2 101 57.4
Thecc.03G136000 Theobroma cacao HOM05D005222 ORTHO05D006230 3.6e-25 118.2 101 64.4
GSVIVG01008600001 Vitis vinifera HOM05D005222 ORTHO05D006230 3.6e-25 118.2 98 62.2
PSO063G7191 Papaver somniferum HOM05D005222 ORTHO05D006230 4.6e-25 117.9 70 77.1
PSO782G1904 Papaver somniferum HOM05D005222 ORTHO05D006230 4.6e-25 117.9 70 77.1
Hund02474 Selenicereus undatus HOM05D005222 ORTHO05D006230 4.6e-25 117.9 101 60.4
unitig_0.g1255 Utricularia gibba HOM05D005222 ORTHO05D006230 4.6e-25 117.9 97 60.8
ClCG06G018150 Citrullus lanatus HOM05D005222 ORTHO05D006230 6.1e-25 117.5 99 58.6
Migut.D01295 Erythranthe guttata HOM05D005222 ORTHO05D006230 6.1e-25 117.5 97 58.8
Gohir.D12G194600 Gossypium hirsutum HOM05D005222 ORTHO05D006230 6.1e-25 117.5 101 60.4
RcHm_v2.0_Chr7g0189291 Rosa chinensis HOM05D005222 ORTHO05D006230 7.9e-25 117.1 101 57.4
CSS0034357 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 1.0e-24 116.7 72 75.0
Nitab4.5_0000033g0050 Nicotiana tabacum HOM05D005222 ORTHO05D006230 1.0e-24 116.7 67 83.6
Atru.chr6.1879 Acer truncatum HOM05D005222 ORTHO05D006230 1.4e-24 116.3 98 60.2
Aa31LG3G7230 Aethionema arabicum HOM05D005222 ORTHO05D006230 1.4e-24 116.3 69 76.8
THA.LOC104811566 Tarenaya hassleriana HOM05D005222 ORTHO05D006230 1.4e-24 116.3 101 58.4
Ca_16071_v3 Cicer arietinum L. HOM05D005222 ORTHO05D006230 1.8e-24 115.9 66 78.8
Ciclev10033230m.g Citrus clementina HOM05D005222 ORTHO05D006230 1.8e-24 115.9 101 59.4
Glyma.06G166600 Glycine max HOM05D005222 ORTHO05D006230 1.8e-24 115.9 79 70.9
FvH4_5g08990 Fragaria vesca HOM05D005222 ORTHO05D006230 2.3e-24 115.5 71 74.6
Lalb_Chr08g0237411 Lupinus albus HOM05D005222 ORTHO05D006230 2.3e-24 115.5 66 78.8
Glyma.04G198900 Glycine max HOM05D005222 ORTHO05D006230 3.0e-24 115.2 66 78.8
Phvul.009G163100 Phaseolus vulgaris HOM05D005222 ORTHO05D006230 3.0e-24 115.2 66 78.8
Rhsim12G0178200 Rhododendron simsii HOM05D005222 ORTHO05D006230 3.0e-24 115.2 99 57.6
Duzib205G1725 Durio zibethinus HOM05D005222 ORTHO05D006230 3.9e-24 114.8 101 60.4
FAN04G2766 Fragaria x ananassa HOM05D005222 ORTHO05D006230 3.9e-24 114.8 101 55.4
Carub.0008s1080 Capsella rubella HOM05D005222 ORTHO05D006230 5.1e-24 114.4 98 58.2
CSS0012412 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 8.8e-24 113.6 61 85.2
TAR629G0657 Trochodendron aralioides HOM05D005222 ORTHO05D006230 8.8e-24 113.6 64 81.2
CDE06G2816 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 1.1e-23 113.2 101 54.5
Sp6g12920 Schrenkiella parvula HOM05D005222 ORTHO05D006230 1.1e-23 113.2 98 58.2
Solyc03g097640.3 Solanum lycopersicum HOM05D005222 ORTHO05D006230 1.1e-23 113.2 98 60.2
ClCG04G004850 Citrullus lanatus HOM05D005222 ORTHO05D006230 1.5e-23 112.8 73 72.6
SEGI_36916 Sequoiadendron giganteum HOM05D005222 ORTHO05D006230 2.0e-23 112.5 99 55.6
CSS0000670 Camellia sinensis var. sinensis HOM05D005222 ORTHO05D006230 2.5e-23 112.1 61 83.6
CDE02G1328 Ceratophyllum demersum HOM05D005222 ORTHO05D006230 2.5e-23 112.1 101 54.5
Lj1g0004473 Lotus japonicus HOM05D005222 ORTHO05D006230 2.5e-23 112.1 101 56.4
TAR374G1676 Trochodendron aralioides HOM05D005222 ORTHO05D006230 2.5e-23 112.1 101 58.4
ATR0582G313 Amborella trichopoda HOM05D005222 ORTHO05D006230 3.3e-23 111.7 99 57.6
AT5G50810 Arabidopsis thaliana HOM05D005222 ORTHO05D006230 4.3e-23 111.3 98 57.1
CAN.G101.22 Capsicum annuum HOM05D005222 ORTHO05D006230 5.7e-23 110.9 79 69.6
AUR62029544 Chenopodium quinoa HOM05D005222 ORTHO05D006230 5.7e-23 110.9 67 74.6
AUR62034814 Chenopodium quinoa HOM05D005222 ORTHO05D006230 5.7e-23 110.9 67 74.6
Duzib084G0042 Durio zibethinus HOM05D005222 ORTHO05D006230 5.7e-23 110.9 66 78.8
Gorai.008G209300 Gossypium raimondii HOM05D005222 ORTHO05D006230 5.7e-23 110.9 65 78.5
Medtr3g098820 Medicago truncatula HOM05D005222 ORTHO05D006230 7.4e-23 110.5 66 74.2
GSVIVG01033034001 Vitis vinifera HOM05D005222 ORTHO05D006230 9.7e-23 110.2 101 57.4
MELO3C026182.2 Cucumis melo HOM05D005222 ORTHO05D006230 1.3e-22 109.8 60 81.7
vmacro16739 Vaccinium macrocarpon HOM05D005222 ORTHO05D006230 2.8e-22 108.6 63 79.4
QL05p049336 Quercus lobata HOM05D005222 ORTHO05D006230 6.3e-22 107.5 65 75.4
QL10p001732 Quercus lobata HOM05D005222 ORTHO05D006230 6.3e-22 107.5 65 75.4
Cc04_g09830 Coffea canephora HOM05D005222 ORTHO05D006230 8.2e-22 107.1 66 74.2
Pp3c22_9040 Physcomitrium patens HOM05D005222 ORTHO05D006230 8.2e-22 107.1 65 70.8
TPR.G21582 Trifolium pratense HOM05D005222 ORTHO05D006230 1.1e-21 106.7 101 54.5
CARHR257460 Cardamine hirsuta HOM05D005222 ORTHO05D006230 2.4e-21 105.5 66 68.2
Thhalv10015178m.g Eutrema salsugineum HOM05D005222 ORTHO05D006230 4.1e-21 104.8 66 71.2
VMungo0464G1435 Vigna mungo HOM05D005222 ORTHO05D006230 6.9e-21 104.0 58 77.6
Zm00001eb036900 Zea mays HOM05D005222 ORTHO05D006230 6.9e-21 104.0 62 71.0
Zm00001eb175490 Zea mays HOM05D005222 ORTHO05D006230 9.1e-21 103.6 61 73.8
Lj4g0026334 Lotus japonicus HOM05D005222 ORTHO05D006230 1.2e-20 103.2 66 69.7
Sc07g0003580 Simmondsia chinensis HOM05D005222 ORTHO05D006230 2.0e-20 102.4 101 50.5
Os08g0535600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.6e-20 102.1 62 67.7
arahy.Tifrunner.gnm1.ann1.122S7D Arachis hypogaea HOM05D005222 ORTHO05D006230 4.5e-20 101.3 101 51.5
CARHR232420 Cardamine hirsuta HOM05D005222 ORTHO05D006230 4.5e-20 101.3 68 66.2
arahy.Tifrunner.gnm1.ann1.5QWD0G Arachis hypogaea HOM05D005222 ORTHO05D006230 5.9e-20 100.9 101 51.5
Mapoly0022s0111 Marchantia polymorpha HOM05D005222 ORTHO05D006230 7.7e-20 100.5 65 66.2
COL.COLO4_16662 Corchorus olitorius HOM05D005222 ORTHO05D006230 1.7e-19 99.4 57 78.9
Glyma.05G202400 Glycine max HOM05D005222 ORTHO05D006230 1.7e-19 99.4 66 69.7
Pp3c18_15660 Physcomitrium patens HOM05D005222 ORTHO05D006230 2.9e-19 98.6 66 65.2
A03p16580 Brassica napus HOM05D005222 ORTHO05D006230 3.8e-19 98.2 65 67.7
C03p19510 Brassica napus HOM05D005222 ORTHO05D006230 3.8e-19 98.2 65 67.7
BolC3t14332H Brassica oleracea HOM05D005222 ORTHO05D006230 3.8e-19 98.2 65 67.7
BraA03t10945Z Brassica rapa HOM05D005222 ORTHO05D006230 3.8e-19 98.2 65 67.7
SMO356G0192 Selaginella moellendorffii HOM05D005222 ORTHO05D006230 8.5e-19 97.1 59 67.8
ATR1096G067 Amborella trichopoda HOM05D005222 ORTHO05D006230 1.9e-18 95.9 62 66.1
Psat5g053520 Pisum sativum HOM05D001135 ORTHO05D006230 1.9e-18 95.9 53 77.4
MBI13_g38964_MAGBIO Magnolia biondii HOM05D005222 ORTHO05D006230 2.5e-18 95.5 65 63.1
A01p16290 Brassica napus HOM05D005222 ORTHO05D006230 5.5e-18 94.4 101 47.5
AL8G24980 Arabidopsis lyrata HOM05D005222 ORTHO05D006230 7.2e-18 94.0 54 74.1
BcaC09g50823 Brassica carinata HOM05D005222 ORTHO05D006230 7.2e-18 94.0 101 46.5
C01p20320 Brassica napus HOM05D005222 ORTHO05D006230 7.2e-18 94.0 101 46.5
BolC1t01961H Brassica oleracea HOM05D005222 ORTHO05D006230 7.2e-18 94.0 101 46.5
BcaNung03992 Brassica carinata HOM05D005222 ORTHO05D006230 9.4e-18 93.6 101 46.5
BraA01t01568Z Brassica rapa HOM05D005222 ORTHO05D006230 1.2e-17 93.2 101 46.5
Aqoxy3G01691 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 4.7e-17 91.3 59 64.4
C06p12810 Brassica napus HOM05D005222 ORTHO05D006230 2.3e-16 89.0 65 58.5
Os11g0131700 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 2.3e-16 89.0 98 45.9
BcaC08g43896 Brassica carinata HOM05D005222 ORTHO05D006230 3.9e-16 88.2 65 58.5
Os12g0128600 Oryza sativa ssp. japonica HOM05D005222 ORTHO05D006230 1.1e-15 86.7 98 43.9
Aqoxy5G03239 Aquilegia oxysepala HOM05D005222 ORTHO05D006230 2.6e-15 85.5 63 54.0
Zm00001eb163550 Zea mays HOM05D005222 ORTHO05D006230 9.7e-15 83.6 64 53.1
Nn7g37129 Nelumbo nucifera HOM05D005222 ORTHO05D006230 6.3e-14 80.9 53 62.3
HPP92_001283 Vanilla planifolia HOM05D005222 ORTHO05D006230 3.1e-13 78.6 59 57.6
FvH4_5g07110 Fragaria vesca HOM05D005222 ORTHO05D006230 1.3e-11 73.2 98 39.8
FAN08G2230 Fragaria x ananassa HOM05D005222 ORTHO05D006230 5.5e-10 67.8 98 35.7
AagrBONN_evm.TU.Sc2ySwM_362.856 Anthoceros agrestis HOM05D005222 ORTHO05D006230 1.0e-08 63.5 38 71.1
MCO14G257 Micromonas commoda HOM05D005222 ORTHO05D006230 1.0e-08 63.5 60 48.3
PRCOL_00002805 Prasinoderma coloniale HOM05D003727 ORTHO05D034196 2.0e-07 59.3 68 38.2


User provided reference genes

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