Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.3e-91 339.7 181 100.0
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 4.5e-63 245.0 222 67.6
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 6.3e-49 198.0 220 56.8
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.2e-44 183.7 220 55.0
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 2.1e-44 183.0 224 53.1
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 2.6e-42 176.0 166 65.1
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 4.4e-42 175.3 223 51.6
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 7.5e-42 174.5 224 53.1
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 8.3e-41 171.0 164 61.6
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 2.4e-40 169.5 223 49.8
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 1.6e-39 166.8 220 50.5
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 5.9e-39 164.9 221 50.7
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 1.7e-38 163.3 223 49.3
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 8.6e-38 161.0 221 50.7
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 8.6e-38 161.0 112 84.8
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 1.5e-37 160.2 221 47.5
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.9e-37 159.8 224 49.6
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 5.6e-37 158.3 224 48.2
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 1.2e-36 157.1 222 48.2
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 1.6e-36 156.8 230 48.3
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 2.8e-36 156.0 222 47.7
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 2.8e-36 156.0 221 46.6
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 2.8e-36 156.0 167 58.1
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.0e-35 154.1 223 47.5
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 1.4e-35 153.7 231 48.9
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 2.3e-35 152.9 226 46.5
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 2.3e-35 152.9 235 46.0
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 3.1e-35 152.5 222 47.3
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 8.9e-35 151.0 221 48.4
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 1.5e-34 150.2 233 45.5
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 2.0e-34 149.8 221 47.5
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 4.4e-34 148.7 226 47.3
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 5.8e-34 148.3 221 46.6
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 1.7e-33 146.7 249 43.8
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 6.4e-33 144.8 227 47.6
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 6.4e-33 144.8 222 46.4
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 8.3e-33 144.4 165 55.8
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 8.3e-33 144.4 231 45.9
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 8.3e-33 144.4 167 56.3
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.1e-32 144.1 217 47.0
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 1.9e-32 143.3 222 43.7
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 2.4e-32 142.9 166 56.6
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 2.4e-32 142.9 217 47.0
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 3.2e-32 142.5 229 46.7
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 3.2e-32 142.5 245 44.5
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 4.1e-32 142.1 223 46.6
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 7.0e-32 141.4 180 55.0
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 7.0e-32 141.4 233 47.6
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 7.0e-32 141.4 237 46.4
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 1.6e-31 140.2 234 45.7
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 2.0e-31 139.8 231 43.7
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.0e-31 139.8 166 55.4
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 3.5e-31 139.0 222 42.8
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 6.0e-31 138.3 230 46.1
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.7e-30 136.7 220 45.9
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 2.3e-30 136.3 238 43.3
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 3.0e-30 136.0 194 47.4
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 6.6e-30 134.8 216 44.0
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 4.3e-29 132.1 222 45.5
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 5.6e-29 131.7 209 44.0
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 5.6e-29 131.7 237 43.9
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 2.8e-28 129.4 185 49.2
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 6.2e-28 128.3 168 53.0
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 6.2e-28 128.3 241 41.5
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.8e-27 126.7 197 44.7
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 2.3e-27 126.3 183 50.3
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 3.1e-27 125.9 174 51.7
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 6.8e-27 124.8 166 51.2
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 8.9e-27 124.4 239 42.7
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 3.4e-26 122.5 222 42.8
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 4.4e-26 122.1 229 41.5
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 5.8e-26 121.7 210 43.8
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 1.7e-25 120.2 227 41.9
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 6.4e-25 118.2 187 46.0
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 3.2e-24 115.9 242 40.9
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 9.2e-24 114.4 229 42.8
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 1.7e-22 110.2 232 39.2
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 8.6e-22 107.8 165 47.9
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 1.1e-21 107.5 226 37.6
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 4.3e-21 105.5 235 38.3
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 7.3e-21 104.8 177 44.6
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 2.1e-20 103.2 168 44.6
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.8e-19 100.1 221 38.0
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 1.5e-18 97.1 171 45.6
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 2.0e-18 96.7 187 38.0
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 1.3e-17 94.0 205 39.5
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 1.7e-17 93.6 224 37.1
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 2.2e-17 93.2 117 49.6
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 4.9e-17 92.0 117 48.7
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 1.4e-16 90.5 175 40.6
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 4.1e-16 89.0 103 54.4
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 5.4e-16 88.6 100 55.0
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 7.1e-16 88.2 103 54.4
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 9.2e-16 87.8 103 53.4
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 1.6e-15 87.0 101 52.5
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.6e-15 87.0 111 52.3
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 2.7e-15 86.3 115 49.6
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 2.7e-15 86.3 96 56.2
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.6e-15 85.5 103 53.4
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 6.0e-15 85.1 95 55.8
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 7.8e-15 84.7 97 54.6
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 1.0e-14 84.3 232 33.2
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.0e-14 84.3 101 52.5
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 1.0e-14 84.3 96 55.2
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 2.3e-14 83.2 95 53.7
Peaxi162Scf00171g00037 Petunia axillaris HOM05D005752 ORTHO05D006959 3.0e-14 82.8 83 57.8
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 6.6e-14 81.6 104 51.0
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 8.6e-14 81.3 133 45.9
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 1.5e-13 80.5 97 53.6
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.9e-13 80.1 223 32.7
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 1.2e-12 77.4 114 49.1
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 2.1e-12 76.6 100 46.0
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 4.7e-12 75.5 39 100.0
SGA_v2.0_scaffold25G10718 Striga asiatica HOM05D005752 ORTHO05D006959 4.7e-12 75.5 111 45.0
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 1.8e-11 73.6 105 48.6
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 4.0e-11 72.4 39 94.9
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 6.8e-11 71.6 48 77.1
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.0e-10 70.1 138 33.3
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 9.9e-10 67.8 79 46.8
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 9.9e-10 67.8 38 89.5
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 1.7e-09 67.0 183 35.5
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 1.4e-08 63.9 181 38.1
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 1.9e-08 63.5 223 31.4
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.4e-08 63.2 35 91.4
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 4.2e-08 62.4 73 53.4
Cc00_g01560 Coffea canephora HOM05D005752 ORTHO05D006959 2.1e-07 60.1 84 42.9
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 2.3e-06 56.6 83 45.8
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 5.1e-06 55.5 86 40.7


User provided reference genes

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