Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 1.8e-309 1065.4 684 100.0
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 1.1e-276 956.4 711 89.5
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 5.3e-266 921.0 711 87.5
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 2.1e-129 467.2 727 48.6
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.1e-117 426.4 754 44.7
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 2.1e-100 370.9 704 50.0
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 7.1e-77 292.7 766 37.6
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 1.8e-67 261.5 798 34.0
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 7.2e-61 239.6 423 43.7
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.5e-34 152.1 362 35.4
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 4.4e-34 150.6 417 33.8
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 5.7e-34 150.2 362 35.1
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.1e-32 146.0 265 42.3
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 2.7e-31 141.4 210 45.7
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 3.2e-29 134.4 321 39.9
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 3.6e-28 131.0 447 29.8
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 8.8e-27 126.3 131 57.3
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.0e-26 125.2 351 35.0
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 4.4e-26 124.0 318 35.5
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 1.3e-25 122.5 273 41.4
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 2.2e-25 121.7 360 34.4
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 1.4e-24 119.0 280 38.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.4e-24 117.1 413 35.4
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 9.2e-24 116.3 258 39.9
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 2.7e-23 114.8 313 39.6
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 1.3e-22 112.5 439 32.3
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 2.3e-22 111.7 119 51.3
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 2.9e-22 111.3 417 33.8
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 5.0e-22 110.5 320 39.4
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.1e-21 109.4 309 38.5
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 1.9e-21 108.6 319 32.3
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 1.9e-21 108.6 322 36.6
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 1.9e-21 108.6 332 33.7
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 2.8e-20 104.8 736 25.3
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.8e-20 104.8 404 32.4
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 3.6e-20 104.4 303 34.3
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 6.1e-20 103.6 365 33.2
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 1.0e-19 102.8 392 30.1
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 1.8e-19 102.1 366 31.7
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 2.3e-19 101.7 360 30.0
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 3.0e-19 101.3 444 28.2
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 6.8e-19 100.1 406 33.0
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.2e-18 99.4 292 33.2
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 1.5e-18 99.0 319 31.0
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.5e-18 99.0 283 39.9
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 2.6e-18 98.2 247 46.6
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 3.4e-18 97.8 287 40.1
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 3.4e-18 97.8 402 31.8
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 4.4e-18 97.4 339 32.2
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 7.5e-18 96.7 276 40.6
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 1.3e-17 95.9 394 29.7
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 1.7e-17 95.5 354 29.7
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 1.7e-17 95.5 424 29.7
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.9e-17 94.7 356 30.9
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 3.7e-17 94.4 358 32.7
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 4.9e-17 94.0 298 30.5
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 4.9e-17 94.0 252 36.1
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 8.3e-17 93.2 304 32.2
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.1e-16 92.8 326 30.7
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 1.1e-16 92.8 303 31.4
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 1.1e-16 92.8 128 48.4
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 2.4e-16 91.7 452 28.8
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.4e-16 91.7 417 30.2
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 3.2e-16 91.3 84 53.6
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 4.1e-16 90.9 443 30.5
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 7.0e-16 90.1 330 29.7
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 7.0e-16 90.1 259 31.3
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-15 89.4 448 27.9
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.2e-15 89.4 288 31.9
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.2e-15 89.4 434 27.9
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 1.6e-15 89.0 291 35.7
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 1.6e-15 89.0 288 31.9
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.7e-15 88.2 126 44.4
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 3.5e-15 87.8 327 29.7
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 3.5e-15 87.8 327 29.7
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 3.5e-15 87.8 336 31.0
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 4.6e-15 87.4 447 28.0
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 5.9e-15 87.0 456 29.4
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 1.0e-14 86.3 256 31.6
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 3.0e-14 84.7 160 38.1
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 3.0e-14 84.7 160 38.1
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 3.9e-14 84.3 139 39.6
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 5.0e-14 84.0 370 28.9
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 5.0e-14 84.0 370 28.9
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 6.6e-14 83.6 403 30.8
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 8.6e-14 83.2 283 33.2
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 1.1e-13 82.8 140 44.3
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 2.5e-13 81.6 129 40.3
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 2.5e-13 81.6 304 29.6
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.5e-13 81.6 369 28.7
Nitab4.5_0004928g0010 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.3e-13 81.3 301 39.5
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 3.3e-13 81.3 740 27.4
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 5.6e-13 80.5 316 28.8
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 5.6e-13 80.5 241 33.2
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 5.6e-13 80.5 102 47.1
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 5.6e-13 80.5 102 48.0
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 5.6e-13 80.5 440 27.0
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 7.3e-13 80.1 367 28.6
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 7.3e-13 80.1 383 28.7
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 7.3e-13 80.1 441 27.4
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 9.5e-13 79.7 479 25.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.2e-12 79.3 459 26.4
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 2.1e-12 78.6 160 40.0
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 2.8e-12 78.2 285 29.1
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.8e-12 78.2 439 33.7
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.8e-12 78.2 425 27.1
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 4.7e-12 77.4 404 28.5
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 4.7e-12 77.4 464 27.6
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 4.7e-12 77.4 434 28.8
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 4.7e-12 77.4 448 27.7
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 6.2e-12 77.0 466 26.2
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 6.2e-12 77.0 498 25.5
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 1.1e-11 76.3 425 25.6
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.1e-11 76.3 466 24.2
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.1e-11 76.3 319 32.3
AUR62005909 Chenopodium quinoa HOM05D022644 ORTHO05D003557 3.1e-11 74.7 434 26.5
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 4.0e-11 74.3 487 28.3
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 5.2e-11 73.9 301 27.9
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 1.2e-10 72.8 746 23.1
Zm00001eb063140 Zea mays HOM05D021310 ORTHO05D003557 1.2e-10 72.8 153 35.9
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 1.5e-10 72.4 260 32.3
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 2.0e-10 72.0 388 27.6
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.0e-10 72.0 717 23.2
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 2.6e-10 71.6 60 55.0
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.4e-10 71.2 341 27.3
Zm00001eb251590 Zea mays HOM05D021310 ORTHO05D003557 5.8e-10 70.5 174 35.1
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 9.8e-10 69.7 360 26.1
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 2.9e-09 68.2 393 28.2
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 8.3e-09 66.6 143 36.4
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 1.4e-08 65.9 464 25.2
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 1.4e-08 65.9 130 38.5
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.9e-08 65.5 731 24.1
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 4.1e-08 64.3 39 76.9
CDE11G0117 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 7.0e-08 63.5 332 28.9
CDE02G2994 Ceratophyllum demersum HOM05D004299 ORTHO05D003557 9.2e-08 63.2 339 28.6
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 9.2e-08 63.2 104 43.3
HanXRQChr05g0158421 Helianthus annuus HOM05D000441 ORTHO05D003557 9.2e-08 63.2 53 62.3
HanXRQChr12g0357091 Helianthus annuus HOM05D000441 ORTHO05D003557 9.2e-08 63.2 53 62.3
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 9.2e-08 63.2 139 38.1
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 1.6e-07 62.4 751 22.4
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 1.6e-07 62.4 43 69.8
Lj4C698G20 Lonicera japonica HOM05D011323 ORTHO05D010674 2.0e-07 62.0 98 43.9
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 2.7e-07 61.6 729 23.6
Zm00001eb430160 Zea mays HOM05D033178 ORTHO05D037852 1.0e-06 59.7 132 35.6
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 1.3e-06 59.3 433 24.9
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 1.3e-06 59.3 33 78.8
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 1.3e-06 59.3 368 25.5
CSS0012606 Camellia sinensis var. sinensis HOM05D033310 ORTHO05D010674 2.3e-06 58.5 36 75.0
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 2.3e-06 58.5 273 29.7
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 3.9e-06 57.8 775 23.1
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 3.9e-06 57.8 44 65.9
ATR0149G001 Amborella trichopoda HOM05D033261 ORTHO05D003557 5.0e-06 57.4 101 39.6
Cc10_g15040 Coffea canephora HOM05D011323 ORTHO05D010674 5.0e-06 57.4 68 48.5
Dinv25882 Davidia involucrata HOM05D016043 ORTHO05D010674 8.6e-06 56.6 36 72.2


User provided reference genes

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