Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026917 Solanum tuberosum HOM05D006730 ORTHO05D008189 0.0e+00 1333.2 682 100.0
Sopen06g029510 Solanum pennellii HOM05D006730 ORTHO05D008189 0.0e+00 1249.6 706 91.6
Solyc06g073160.4 Solanum lycopersicum HOM05D006730 ORTHO05D008189 0.0e+00 1235.7 706 90.4
Nitab4.5_0001586g0210 Nicotiana tabacum HOM05D006730 ORTHO05D008189 4.2e-279 964.5 640 78.4
Nitab4.5_0002782g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 2.0e-276 955.7 703 72.5
Nitab4.5_0001210g0010 Nicotiana tabacum HOM05D006730 ORTHO05D008189 9.4e-271 936.8 732 69.4
Peaxi162Scf00180g00519 Petunia axillaris HOM05D006730 ORTHO05D008189 1.5e-252 876.3 642 72.4
Oeu002416.1 Olea europaea HOM05D006730 ORTHO05D008189 4.4e-119 433.0 720 39.0
Actinidia27097 Actinidia chinensis HOM05D006730 ORTHO05D008189 7.8e-116 422.2 690 39.0
TAR633G0487 Trochodendron aralioides HOM05D006730 ORTHO05D008189 5.4e-101 372.9 719 37.6
MSTRG.27276 Avicennia marina HOM05D006730 ORTHO05D008189 2.7e-100 370.5 680 38.4
vmacro00655 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 1.9e-98 364.4 640 37.8
vmacro21172 Vaccinium macrocarpon HOM05D006730 ORTHO05D008189 3.6e-97 360.1 731 36.0
Cfa015217 Carpinus fangiana HOM05D006730 ORTHO05D008189 2.4e-96 357.5 727 35.9
TAR633G1963 Trochodendron aralioides HOM05D006730 ORTHO05D008189 1.7e-94 351.3 719 36.6
QL10p052118 Quercus lobata HOM05D006730 ORTHO05D008189 7.3e-90 335.9 728 34.5
Cc03_g12540 Coffea canephora HOM05D006730 ORTHO05D008189 9.6e-90 335.5 671 35.5
Sc19g0000330 Simmondsia chinensis HOM05D006730 ORTHO05D008189 1.6e-89 334.7 727 34.9
SGA_v2.0_scaffold94G28623 Striga asiatica HOM05D006730 ORTHO05D008189 5.3e-88 329.7 730 34.9
Cpa.g.sc9.329 Carica papaya HOM05D006730 ORTHO05D008189 9.0e-88 328.9 695 35.5
Ciclev10019155m.g Citrus clementina HOM05D006730 ORTHO05D008189 3.8e-86 323.6 723 34.6
SGA_v2.0_scaffold60G20910 Striga asiatica HOM05D005928 ORTHO05D007500 6.4e-86 322.8 666 35.4
Prupe.8G045700 Prunus persica HOM05D006730 ORTHO05D008189 1.1e-85 322.0 725 32.7
Manes.04G048400 Manihot esculenta HOM05D006730 ORTHO05D008189 1.4e-85 321.6 724 34.9
Nn1g09713 Nelumbo nucifera HOM05D006730 ORTHO05D008189 2.4e-85 320.9 716 32.8
Atru.chr4.1340 Acer truncatum HOM05D006730 ORTHO05D008189 7.9e-84 315.8 681 35.8
Oeu029987.1 Olea europaea HOM05D006730 ORTHO05D008189 9.6e-82 308.9 679 35.2
Lj3A110T20 Lonicera japonica HOM05D006730 ORTHO05D008189 1.5e-79 301.6 643 35.6
MD04G1046800 Malus domestica HOM05D006730 ORTHO05D008189 2.6e-79 300.8 727 31.6
Eucgr.A00038 Eucalyptus grandis HOM05D006730 ORTHO05D008189 1.7e-78 298.1 714 34.2
Hma1.2p1_0324F.1_g125720 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 2.9e-78 297.4 582 36.9
Haze_01419 Corylus avellana HOM05D006730 ORTHO05D008189 3.8e-78 297.0 646 34.7
Hma1.2p1_3037F.1_g331960 Hydrangea macrophylla HOM05D006730 ORTHO05D008189 4.9e-78 296.6 582 36.9
Potri.017G018300 Populus trichocarpa HOM05D006730 ORTHO05D008189 4.9e-78 296.6 679 35.8
GSVIVG01038091001 Vitis vinifera HOM05D006730 ORTHO05D008189 3.0e-75 287.3 600 36.2
Thecc.04G171700 Theobroma cacao HOM05D006730 ORTHO05D008189 8.7e-75 285.8 704 33.7
Carub.0007s3500 Capsella rubella HOM05D006730 ORTHO05D008189 1.1e-74 285.4 709 33.4
AL7G49300 Arabidopsis lyrata HOM05D006730 ORTHO05D008189 1.9e-74 284.6 714 32.8
PGR102G2296 Punica granatum HOM05D006730 ORTHO05D008189 7.4e-74 282.7 715 32.7
Dinv05091 Davidia involucrata HOM05D006730 ORTHO05D008189 9.6e-74 282.3 616 35.1
Duzib151G0982 Durio zibethinus HOM05D006730 ORTHO05D008189 3.7e-73 280.4 699 32.8
Sed0020880 Sechium edule HOM05D006730 ORTHO05D008189 4.8e-73 280.0 722 31.4
COL.COLO4_28380 Corchorus olitorius HOM05D006730 ORTHO05D008189 6.2e-73 279.6 693 33.3
THA.LOC104805724 Tarenaya hassleriana HOM05D006730 ORTHO05D008189 8.1e-73 279.3 716 33.0
FvH4_1g27220 Fragaria vesca HOM05D006730 ORTHO05D008189 1.4e-72 278.5 716 33.2
FAN26G1825 Fragaria x ananassa HOM05D006730 ORTHO05D008189 5.3e-72 276.6 713 32.0
Ca_03751_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 9.0e-72 275.8 717 31.2
Aa31LG1G25250 Aethionema arabicum HOM05D006730 ORTHO05D008189 1.5e-71 275.0 711 31.4
Sabra17G0012500 Salix brachista HOM05D006730 ORTHO05D008189 3.4e-71 273.9 693 33.8
CsaV3_7G002050 Cucumis sativus L. HOM05D006730 ORTHO05D008189 1.0e-70 272.3 673 31.8
Sabra06G0076300 Salix brachista HOM05D006730 ORTHO05D008189 3.8e-70 270.4 662 35.0
CiPaw.01G173600 Carya illinoinensis HOM05D006730 ORTHO05D008189 2.5e-69 267.7 657 34.6
MELO3C015702.2 Cucumis melo HOM05D006730 ORTHO05D008189 2.5e-69 267.7 676 32.0
FAN19G2476 Fragaria x ananassa HOM05D006730 ORTHO05D008189 2.5e-69 267.7 700 31.6
VMungo0647G1321 Vigna mungo HOM05D006730 ORTHO05D008189 2.5e-69 267.7 682 33.4
Phvul.011G201600 Phaseolus vulgaris HOM05D006730 ORTHO05D008189 3.2e-69 267.3 712 32.6
Glyma.12G050000 Glycine max HOM05D006730 ORTHO05D008189 5.5e-69 266.5 706 31.4
TAR633G2319 Trochodendron aralioides HOM05D006730 ORTHO05D008189 7.1e-69 266.2 536 36.9
AT5G40520 Arabidopsis thaliana HOM05D006730 ORTHO05D008189 3.9e-67 260.4 712 31.9
VMungo0720G0522 Vigna mungo HOM05D006730 ORTHO05D008189 1.9e-66 258.1 711 31.6
Lsat_1_v5_gn_5_69460 Lactuca sativa HOM05D006730 ORTHO05D008189 4.3e-66 256.9 701 32.0
ClCG09G018880 Citrullus lanatus HOM05D006730 ORTHO05D008189 1.3e-65 255.4 663 31.4
Ca_07546_v3 Cicer arietinum L. HOM05D006730 ORTHO05D008189 4.8e-65 253.4 677 31.0
CARHR138600 Cardamine hirsuta HOM05D006730 ORTHO05D008189 1.4e-64 251.9 600 32.5
TPR.G34183 Trifolium pratense HOM05D006730 ORTHO05D008189 1.4e-64 251.9 687 31.0
Gohir.D02G011000 Gossypium hirsutum HOM05D006730 ORTHO05D008189 9.0e-64 249.2 703 30.7
ECA233G5772 Erigeron canadensis HOM05D005219 ORTHO05D006451 1.2e-63 248.8 613 31.0
Gorai.005G013400 Gossypium raimondii HOM05D006730 ORTHO05D008189 2.6e-63 247.7 703 30.3
A05p16170 Brassica napus HOM05D006730 ORTHO05D008189 7.6e-63 246.1 710 29.7
BraA05t20528Z Brassica rapa HOM05D006730 ORTHO05D008189 1.0e-62 245.7 710 30.0
RcHm_v2.0_Chr3g0487611 Rosa chinensis HOM05D006730 ORTHO05D008189 1.0e-62 245.7 728 31.2
Lj3g0015132 Lotus japonicus HOM05D006730 ORTHO05D008189 4.2e-61 240.4 707 30.8
MBI11_g10487_MAGBIO Magnolia biondii HOM05D006730 ORTHO05D008189 1.6e-60 238.4 654 31.8
AUR62005936 Chenopodium quinoa HOM05D006730 ORTHO05D008189 2.7e-60 237.7 660 31.1
Medtr4g068005 Medicago truncatula HOM05D006730 ORTHO05D008189 3.5e-60 237.3 707 30.3
BcaB02g08030 Brassica carinata HOM05D006730 ORTHO05D008189 4.6e-60 236.9 721 29.5
Sp7g05120 Schrenkiella parvula HOM05D006730 ORTHO05D008189 6.1e-60 236.5 739 29.0
EL10Ac9g22987 Beta vulgaris HOM05D006730 ORTHO05D008189 3.9e-59 233.8 707 29.4
BolC6t36977H Brassica oleracea HOM05D006730 ORTHO05D008189 8.7e-59 232.6 716 29.5
AUR62028127 Chenopodium quinoa HOM05D006730 ORTHO05D008189 4.3e-58 230.3 665 31.0
arahy.Tifrunner.gnm1.ann1.S6BLSS Arachis hypogaea HOM05D006730 ORTHO05D008189 1.6e-57 228.4 712 31.0
BcaC08g44345 Brassica carinata HOM05D006730 ORTHO05D008189 2.2e-57 228.0 705 28.8
C06p17830 Brassica napus HOM05D006730 ORTHO05D008189 2.2e-57 228.0 740 28.6
Psat7g208760 Pisum sativum HOM05D006730 ORTHO05D008189 1.8e-56 224.9 671 31.4
TWI15G0430 Tripterygium wilfordii HOM05D006730 ORTHO05D008189 5.3e-56 223.4 712 28.9
Thhalv10027675m.g Eutrema salsugineum HOM05D006730 ORTHO05D008189 2.2e-54 218.0 714 30.1
CANSAT56G2182 Cannabis sativa HOM05D006730 ORTHO05D008189 1.4e-53 215.3 727 28.3
HanXRQChr17g0565921 Helianthus annuus HOM05D006730 ORTHO05D008189 1.6e-52 211.8 389 36.0
CSS0011413 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 2.1e-52 211.5 292 43.8
SGA_v2.0_scaffold36G14479 Striga asiatica HOM05D000061 ORTHO05D008189 1.4e-51 208.8 634 31.5
Lalb_Chr03g0025971 Lupinus albus HOM05D006730 ORTHO05D008189 1.8e-51 208.4 712 29.1
Lalb_Chr03g0026031 Lupinus albus HOM05D006730 ORTHO05D008189 1.8e-51 208.4 712 29.1
arahy.Tifrunner.gnm1.ann1.PF62HI Arachis hypogaea HOM05D006730 ORTHO05D008189 1.1e-50 205.7 699 30.0
Hund25530 Selenicereus undatus HOM05D006730 ORTHO05D008189 1.3e-49 202.2 427 32.3
Gohir.A02G010500 Gossypium hirsutum HOM05D006730 ORTHO05D008189 1.8e-48 198.4 411 36.0
CSS0007333 Camellia sinensis var. sinensis HOM05D006730 ORTHO05D008189 2.0e-42 178.3 290 38.3
CDE07G0581 Ceratophyllum demersum HOM05D006730 ORTHO05D008189 1.1e-40 172.6 680 27.1
unitig_26.g9736 Utricularia gibba HOM05D006730 ORTHO05D006349 1.9e-37 161.8 424 29.5
DCAR_027052 Daucus carota HOM05D006730 ORTHO05D008189 9.4e-37 159.5 379 33.5
SHI01154 Sapria himalayana HOM05D006730 ORTHO05D008189 3.0e-35 154.5 457 30.4
ATR0743G243 Amborella trichopoda HOM05D006730 ORTHO05D008189 1.5e-34 152.1 400 32.5
PSO017G5839 Papaver somniferum HOM05D006730 ORTHO05D008189 2.2e-30 138.3 427 29.7
Nitab4.5_0000946g0050 Nicotiana tabacum HOM05D006730 ORTHO05D008189 1.6e-28 132.1 106 66.0
FAN28G2072 Fragaria x ananassa HOM05D006730 ORTHO05D008189 6.8e-27 126.7 343 31.8
FAN23G1889 Fragaria x ananassa HOM05D006730 ORTHO05D008189 1.6e-23 115.5 569 25.7
Os09g0103200 Oryza sativa ssp. japonica HOM05D006730 ORTHO05D008189 2.2e-22 111.7 420 27.1
PSO063G4508 Papaver somniferum HOM05D006730 ORTHO05D008189 5.0e-22 110.5 349 29.8
Ah.10g027080 Amaranthus hybridus HOM05D006730 ORTHO05D008189 4.0e-19 100.9 388 29.4
FAN28G2984 Fragaria x ananassa HOM05D006730 ORTHO05D008189 8.8e-19 99.8 360 26.9
Actinidia26680 Actinidia chinensis HOM05D006730 ORTHO05D008189 2.8e-17 94.7 280 29.3
Zm00001eb184290 Zea mays HOM05D006730 ORTHO05D008189 6.3e-17 93.6 373 25.2
Ah.10g027090 Amaranthus hybridus HOM05D006730 ORTHO05D008189 2.1e-12 78.6 161 32.9
HanXRQChr12g0385981 Helianthus annuus HOM05D006730 ORTHO05D008189 9.8e-10 69.7 102 43.1
SGA_v2.0_scaffold45G17088 Striga asiatica HOM05D001172 ORTHO05D001128 1.4e-08 65.9 104 37.5
HPP92_022486 Vanilla planifolia HOM05D001064 ORTHO05D000885 1.7e-06 58.9 286 25.2
Gohir.A02G010550 Gossypium hirsutum HOM05D006730 ORTHO05D008189 3.0e-06 58.2 87 34.5
Pp3c1_41270 Physcomitrium patens HOM05D026854 ORTHO05D008189 3.0e-06 58.2 378 25.1


User provided reference genes

Program Settings