Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026832 Solanum tuberosum HOM05D004165 ORTHO05D005063 1.7e-85 319.3 159 100.0
Solyc04g051570.4 Solanum lycopersicum HOM05D004165 ORTHO05D005063 3.5e-43 178.7 93 92.5
Sopen04g022920 Solanum pennellii HOM05D004165 ORTHO05D005063 3.5e-43 178.7 93 92.5
Nitab4.5_0009050g0010 Nicotiana tabacum HOM05D004165 ORTHO05D005063 5.6e-41 171.4 127 70.9
Nitab4.5_0000184g0120 Nicotiana tabacum HOM05D004165 ORTHO05D005063 1.6e-40 169.9 125 71.2
PGSC0003DMG401020957 Solanum tuberosum HOM05D004165 ORTHO05D005063 3.6e-40 168.7 83 98.8
Peaxi162Scf00702g00611 Petunia axillaris HOM05D004165 ORTHO05D005063 3.4e-30 135.6 117 64.1
SalBow6G1439 Salvia bowleyana HOM05D004165 ORTHO05D005063 6.2e-24 114.8 126 47.6
Cc07_g16560 Coffea canephora HOM05D004165 ORTHO05D005063 2.4e-23 112.8 93 55.9
Lj4C863G6 Lonicera japonica HOM05D004165 ORTHO05D005063 3.1e-23 112.5 93 54.8
MSTRG.23305 Avicennia marina HOM05D004165 ORTHO05D005063 5.8e-22 108.2 93 55.9
Oeu054941.1 Olea europaea HOM05D004165 ORTHO05D005063 5.8e-22 108.2 132 47.0
Dinv21242 Davidia involucrata HOM05D004165 ORTHO05D005063 1.3e-21 107.1 144 39.6
SGA_v2.0_scaffold2G01283 Striga asiatica HOM05D004165 ORTHO05D005063 2.4e-20 102.8 93 53.8
Cfa002775 Carpinus fangiana HOM05D004165 ORTHO05D005063 3.2e-20 102.4 93 49.5
AUR62017931 Chenopodium quinoa HOM05D004165 ORTHO05D005063 4.2e-20 102.1 97 49.5
QL06p031619 Quercus lobata HOM05D004165 ORTHO05D005063 7.1e-20 101.3 97 47.4
AUR62003622 Chenopodium quinoa HOM05D004165 ORTHO05D005063 1.2e-19 100.5 97 48.5
MD15G1330600 Malus domestica HOM05D004165 ORTHO05D005063 1.2e-19 100.5 93 53.8
DCAR_016674 Daucus carota HOM05D004165 ORTHO05D005063 1.6e-19 100.1 93 47.3
CiPaw.03G132500 Carya illinoinensis HOM05D004165 ORTHO05D005063 4.6e-19 98.6 93 49.5
FvH4_1g23050 Fragaria vesca HOM05D004165 ORTHO05D005063 1.0e-18 97.4 103 47.6
Gohir.D12G093100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 1.0e-18 97.4 100 48.0
Gorai.008G100800 Gossypium raimondii HOM05D004165 ORTHO05D005063 1.0e-18 97.4 100 48.0
RcHm_v2.0_Chr2g0117761 Rosa chinensis HOM05D004165 ORTHO05D005063 1.0e-18 97.4 93 48.4
TAR628G1404 Trochodendron aralioides HOM05D004165 ORTHO05D005063 1.3e-18 97.1 93 49.5
Prupe.6G168600 Prunus persica HOM05D004165 ORTHO05D005063 1.7e-18 96.7 93 51.6
Ciclev10024679m.g Citrus clementina HOM05D004165 ORTHO05D005063 3.0e-18 95.9 93 49.5
FAN23G0468 Fragaria x ananassa HOM05D004165 ORTHO05D005063 3.0e-18 95.9 103 46.6
FAN28G2110 Fragaria x ananassa HOM05D004165 ORTHO05D005063 3.9e-18 95.5 103 46.6
Gohir.A12G083100 Gossypium hirsutum HOM05D004165 ORTHO05D005063 3.9e-18 95.5 100 47.0
Atru.chr4.460 Acer truncatum HOM05D004165 ORTHO05D005063 5.1e-18 95.1 103 47.6
FAN26G2965 Fragaria x ananassa HOM05D004165 ORTHO05D005063 5.1e-18 95.1 103 46.6
MBI01_g36155_MAGBIO Magnolia biondii HOM05D004165 ORTHO05D005063 5.1e-18 95.1 93 48.4
Aqoxy5G02023 Aquilegia oxysepala HOM05D004165 ORTHO05D005063 6.6e-18 94.7 93 45.2
COL.COLO4_22364 Corchorus olitorius HOM05D004165 ORTHO05D005063 6.6e-18 94.7 91 49.5
Haze_25068 Corylus avellana HOM05D004165 ORTHO05D005063 8.7e-18 94.4 83 50.6
FAN19G2841 Fragaria x ananassa HOM05D004165 ORTHO05D005063 8.7e-18 94.4 103 45.6
ECA233G2130 Erigeron canadensis HOM05D004165 ORTHO05D005063 3.3e-17 92.4 93 47.3
PSO210G1143 Papaver somniferum HOM05D004165 ORTHO05D005063 3.3e-17 92.4 93 46.2
PGR004G2408 Punica granatum HOM05D004165 ORTHO05D005063 4.3e-17 92.0 93 47.3
PSO170G0015 Papaver somniferum HOM05D004165 ORTHO05D005063 5.6e-17 91.7 93 46.2
Migut.H02450 Erythranthe guttata HOM05D004165 ORTHO05D005063 7.3e-17 91.3 93 54.8
Manes.12G144600 Manihot esculenta HOM05D004165 ORTHO05D005063 7.3e-17 91.3 93 47.3
Thecc.01G115900 Theobroma cacao HOM05D004165 ORTHO05D005063 7.3e-17 91.3 93 47.3
GSVIVG01022256001 Vitis vinifera HOM05D004165 ORTHO05D005063 3.6e-16 89.0 93 45.2
HanXRQChr08g0218061 Helianthus annuus HOM05D004165 ORTHO05D005063 6.2e-16 88.2 122 37.7
Lsat_1_v5_gn_9_57180 Lactuca sativa HOM05D004165 ORTHO05D005063 8.1e-16 87.8 122 37.7
Nn5g28841 Nelumbo nucifera HOM05D004165 ORTHO05D005063 1.8e-15 86.7 93 46.2
C01p00530 Brassica napus HOM05D004165 ORTHO05D005063 4.0e-15 85.5 93 46.2
BolC1t00056H Brassica oleracea HOM05D004165 ORTHO05D005063 4.0e-15 85.5 93 46.2
Potri.005G086100 Populus trichocarpa HOM05D004165 ORTHO05D005063 5.3e-15 85.1 94 44.7
Sc03g0004750 Simmondsia chinensis HOM05D004165 ORTHO05D005063 6.9e-15 84.7 91 45.1
EL10Ac6g15255 Beta vulgaris HOM05D004165 ORTHO05D005063 9.0e-15 84.3 104 43.3
CsaV3_6G042210 Cucumis sativus L. HOM05D004165 ORTHO05D005063 9.0e-15 84.3 94 41.5
Sabra05G0071000 Salix brachista HOM05D004165 ORTHO05D005063 9.0e-15 84.3 94 43.6
arahy.Tifrunner.gnm1.ann1.F6TX6D Arachis hypogaea HOM05D004165 ORTHO05D005063 1.5e-14 83.6 93 40.9
arahy.Tifrunner.gnm1.ann1.KAY7L7 Arachis hypogaea HOM05D004165 ORTHO05D005063 1.5e-14 83.6 93 40.9
MELO3C007461.2 Cucumis melo HOM05D004165 ORTHO05D005063 2.6e-14 82.8 94 41.5
ATR1120G060 Amborella trichopoda HOM05D004165 ORTHO05D005063 4.4e-14 82.0 93 43.0
AT4G39420 Arabidopsis thaliana HOM05D004165 ORTHO05D005063 4.4e-14 82.0 93 45.2
Lalb_Chr13g0296271 Lupinus albus HOM05D004165 ORTHO05D005063 4.4e-14 82.0 93 40.9
Potri.007G078650 Populus trichocarpa HOM05D004165 ORTHO05D005063 4.4e-14 82.0 93 41.9
THA.LOC104804480 Tarenaya hassleriana HOM05D004165 ORTHO05D005063 4.4e-14 82.0 93 43.0
Actinidia28449 Actinidia chinensis HOM05D004165 ORTHO05D005063 5.8e-14 81.6 96 42.7
ClCG01G015940 Citrullus lanatus HOM05D004165 ORTHO05D005063 5.8e-14 81.6 94 40.4
A01p00380 Brassica napus HOM05D004165 ORTHO05D005063 9.9e-14 80.9 93 44.1
BraA01t00046Z Brassica rapa HOM05D004165 ORTHO05D005063 9.9e-14 80.9 93 44.1
Hma1.2p1_0134F.1_g061540 Hydrangea macrophylla HOM05D004165 ORTHO05D005063 9.9e-14 80.9 97 44.3
vmacro12886 Vaccinium macrocarpon HOM05D004165 ORTHO05D005063 9.9e-14 80.9 94 46.8
CARHR247290 Cardamine hirsuta HOM05D004165 ORTHO05D005063 1.3e-13 80.5 93 43.0
Sed0015867 Sechium edule HOM05D004165 ORTHO05D005063 2.2e-13 79.7 94 42.6
CANSAT01G1143 Cannabis sativa HOM05D004165 ORTHO05D005063 2.9e-13 79.3 93 43.0
Sp7g36440 Schrenkiella parvula HOM05D004165 ORTHO05D005063 2.9e-13 79.3 93 44.1
Aa31LG6G15850 Aethionema arabicum HOM05D004165 ORTHO05D005063 3.8e-13 79.0 94 43.6
AL7G11450 Arabidopsis lyrata HOM05D004165 ORTHO05D005063 3.8e-13 79.0 93 44.1
CSS0013219 Camellia sinensis var. sinensis HOM05D004165 ORTHO05D005063 3.8e-13 79.0 93 46.2
Thhalv10024179m.g Eutrema salsugineum HOM05D004165 ORTHO05D005063 6.4e-13 78.2 93 44.1
Psat7g050200 Pisum sativum HOM05D004165 ORTHO05D005063 1.1e-12 77.4 93 37.6
Medtr8g092100 Medicago truncatula HOM05D004165 ORTHO05D005063 1.4e-12 77.0 93 39.8
TPR.G2248 Trifolium pratense HOM05D004165 ORTHO05D005063 1.4e-12 77.0 93 37.6
Ca_17683_v3 Cicer arietinum L. HOM05D004165 ORTHO05D005063 2.4e-12 76.3 93 37.6
Carub.0007s0134 Capsella rubella HOM05D004165 ORTHO05D005063 3.2e-12 75.9 93 43.0
Phvul.002G266300 Phaseolus vulgaris HOM05D004165 ORTHO05D005063 4.2e-12 75.5 95 38.9
TPR.G2323 Trifolium pratense HOM05D004165 ORTHO05D005063 7.1e-12 74.7 91 37.4
VMungo0251G1264 Vigna mungo HOM05D004165 ORTHO05D005063 2.7e-11 72.8 95 38.9
Lj4g0014922 Lotus japonicus HOM05D004165 ORTHO05D005063 3.9e-10 68.9 93 35.5
Glyma.08G143200 Glycine max HOM05D004165 ORTHO05D005063 5.1e-10 68.6 105 38.1
unitig_899.g14615 Utricularia gibba HOM05D004165 ORTHO05D005063 1.1e-09 67.4 91 41.8
HPP92_013330 Vanilla planifolia HOM05D004165 ORTHO05D005063 1.1e-09 67.4 91 44.0
HPP92_013326 Vanilla planifolia HOM05D004165 ORTHO05D005063 1.9e-09 66.6 93 44.1
Glyma.05G185300 Glycine max HOM05D004165 ORTHO05D005063 2.5e-09 66.2 105 37.1
SEGI_01323 Sequoiadendron giganteum HOM05D004165 ORTHO05D005063 3.3e-09 65.9 95 35.8
CDE07G1357 Ceratophyllum demersum HOM05D004165 ORTHO05D005063 4.3e-09 65.5 63 49.2
Mapoly0066s0021 Marchantia polymorpha HOM05D004165 ORTHO05D005063 7.6e-06 54.7 69 37.7


User provided reference genes

Program Settings