Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026801 Solanum tuberosum HOM05D004440 ORTHO05D005183 7.9e-85 317.0 152 100.0
Solyc02g086880.4 Solanum lycopersicum HOM05D004440 ORTHO05D005183 5.9e-40 167.9 99 84.8
Sopen02g031650 Solanum pennellii HOM05D004440 ORTHO05D005183 5.9e-40 167.9 99 84.8
PGSC0003DMG400000496 Solanum tuberosum HOM05D004440 ORTHO05D005183 5.9e-40 167.9 99 84.8
Nitab4.5_0003337g0060 Nicotiana tabacum HOM05D004440 ORTHO05D005183 2.9e-39 165.6 99 82.8
Nitab4.5_0005176g0010 Nicotiana tabacum HOM05D004440 ORTHO05D005183 2.9e-39 165.6 99 82.8
Peaxi162Scf00129g01035 Petunia axillaris HOM05D004440 ORTHO05D005183 3.8e-39 165.2 99 82.8
CAN.G206.32 Capsicum annuum HOM05D004440 ORTHO05D005183 4.2e-38 161.8 99 81.8
TAR622G1110 Trochodendron aralioides HOM05D004440 ORTHO05D005183 4.2e-38 161.8 99 80.8
Oeu062918.1 Olea europaea HOM05D004440 ORTHO05D005183 1.6e-37 159.8 99 78.8
MSTRG.3172 Avicennia marina HOM05D004440 ORTHO05D005183 2.1e-37 159.5 99 78.8
DCAR_021682 Daucus carota HOM05D004440 ORTHO05D005183 2.1e-37 159.5 98 80.6
Lsat_1_v5_gn_2_92220 Lactuca sativa HOM05D004440 ORTHO05D005183 6.1e-37 157.9 99 78.8
MBI16_g32801_MAGBIO Magnolia biondii HOM05D004440 ORTHO05D005183 6.1e-37 157.9 99 79.8
Manes.17G122100 Manihot esculenta HOM05D004440 ORTHO05D005183 1.0e-36 157.1 99 78.8
GSVIVG01032479001 Vitis vinifera HOM05D004440 ORTHO05D005183 1.4e-36 156.8 99 77.8
CARHR198530 Cardamine hirsuta HOM05D004440 ORTHO05D005183 2.3e-36 156.0 98 78.6
Thhalv10013803m.g Eutrema salsugineum HOM05D004440 ORTHO05D005183 2.3e-36 156.0 98 78.6
BcaB08g36947 Brassica carinata HOM05D004440 ORTHO05D005183 3.0e-36 155.6 98 77.6
AL6G25580 Arabidopsis lyrata HOM05D004440 ORTHO05D005183 4.0e-36 155.2 98 77.6
AT5G14780 Arabidopsis thaliana HOM05D004440 ORTHO05D005183 4.0e-36 155.2 98 77.6
A02p02730 Brassica napus HOM05D004440 ORTHO05D005183 5.2e-36 154.8 98 77.6
BolC2t06663H Brassica oleracea HOM05D004440 ORTHO05D005183 5.2e-36 154.8 98 77.6
BolC2t06665H Brassica oleracea HOM05D004440 ORTHO05D005183 5.2e-36 154.8 98 77.6
CiPaw.03G037800 Carya illinoinensis HOM05D004440 ORTHO05D005183 5.2e-36 154.8 99 76.8
Sp6g29260 Schrenkiella parvula HOM05D004440 ORTHO05D005183 5.2e-36 154.8 98 77.6
ATR0730G233 Amborella trichopoda HOM05D004440 ORTHO05D005183 6.7e-36 154.5 99 77.8
Carub.0006s1295 Capsella rubella HOM05D004440 ORTHO05D005183 6.7e-36 154.5 98 77.6
Cpa.g.sc39.91 Carica papaya HOM05D004440 ORTHO05D005183 6.7e-36 154.5 98 77.6
CiPaw.04G024700 Carya illinoinensis HOM05D004440 ORTHO05D005183 6.7e-36 154.5 99 76.8
RcHm_v2.0_Chr2g0171431 Rosa chinensis HOM05D004440 ORTHO05D005183 6.7e-36 154.5 99 75.8
BcaC04g19009 Brassica carinata HOM05D004440 ORTHO05D005183 8.8e-36 154.1 98 77.6
BolC9t59075H Brassica oleracea HOM05D004440 ORTHO05D005183 8.8e-36 154.1 98 77.6
Ciclev10015585m.g Citrus clementina HOM05D004440 ORTHO05D005183 8.8e-36 154.1 99 75.8
Nn3g16884 Nelumbo nucifera HOM05D004440 ORTHO05D005183 8.8e-36 154.1 99 75.8
Hund04695 Selenicereus undatus HOM05D004440 ORTHO05D005183 8.8e-36 154.1 99 76.8
Thecc.04G008800 Theobroma cacao HOM05D004440 ORTHO05D005183 1.2e-35 153.7 98 77.6
SGA_v2.0_scaffold135G34861 Striga asiatica HOM05D004440 ORTHO05D005183 1.5e-35 153.3 117 65.8
CSS0042726 Camellia sinensis var. sinensis HOM05D004440 ORTHO05D005183 2.0e-35 152.9 99 75.8
Prupe.3G284000 Prunus persica HOM05D004440 ORTHO05D005183 2.0e-35 152.9 99 73.7
Cc07_g02270 Coffea canephora HOM05D004440 ORTHO05D005183 2.6e-35 152.5 98 77.6
COL.COLO4_28947 Corchorus olitorius HOM05D004440 ORTHO05D005183 2.6e-35 152.5 98 76.5
Duzib147G0931 Durio zibethinus HOM05D004440 ORTHO05D005183 2.6e-35 152.5 98 75.5
FvH4_6g50630 Fragaria vesca HOM05D004440 ORTHO05D005183 2.6e-35 152.5 99 74.7
FAN05G4697 Fragaria x ananassa HOM05D004440 ORTHO05D005183 2.6e-35 152.5 99 74.7
FAN09G2584 Fragaria x ananassa HOM05D004440 ORTHO05D005183 2.6e-35 152.5 99 74.7
FAN14G3873 Fragaria x ananassa HOM05D004440 ORTHO05D005183 2.6e-35 152.5 99 74.7
Gohir.A07G219700 Gossypium hirsutum HOM05D004440 ORTHO05D005183 2.6e-35 152.5 98 76.5
Gorai.001G261400 Gossypium raimondii HOM05D004440 ORTHO05D005183 2.6e-35 152.5 98 76.5
Aqoxy2G03548 Aquilegia oxysepala HOM05D004440 ORTHO05D005183 3.3e-35 152.1 99 75.8
A10p23900 Brassica napus HOM05D004440 ORTHO05D005183 3.3e-35 152.1 98 76.5
C09p62370 Brassica napus HOM05D004440 ORTHO05D005183 3.3e-35 152.1 98 76.5
BraA10t44454Z Brassica rapa HOM05D004440 ORTHO05D005183 3.3e-35 152.1 98 76.5
Dinv33492 Davidia involucrata HOM05D004440 ORTHO05D005183 3.3e-35 152.1 99 76.8
MD09G1034400 Malus domestica HOM05D004440 ORTHO05D005183 3.3e-35 152.1 99 74.7
Aqoxy3G02967 Aquilegia oxysepala HOM05D004440 ORTHO05D005183 4.4e-35 151.8 99 75.8
Cc09_g06160 Coffea canephora HOM05D004440 ORTHO05D005183 4.4e-35 151.8 98 77.6
Manes.15G181900 Manihot esculenta HOM05D004440 ORTHO05D005183 4.4e-35 151.8 99 74.7
Rhsim10G0022600 Rhododendron simsii HOM05D004440 ORTHO05D005183 4.4e-35 151.8 99 73.7
SEGI_05498 Sequoiadendron giganteum HOM05D004440 ORTHO05D005183 4.4e-35 151.8 98 75.5
TWI56G1191 Tripterygium wilfordii HOM05D004440 ORTHO05D005183 4.4e-35 151.8 99 76.8
BcaC03g13445 Brassica carinata HOM05D004440 ORTHO05D005183 5.7e-35 151.4 98 76.5
C02p07330 Brassica napus HOM05D004440 ORTHO05D005183 5.7e-35 151.4 98 76.5
Carub.0001s3408 Capsella rubella HOM05D004440 ORTHO05D005183 5.7e-35 151.4 98 75.5
Thhalv10012160m.g Eutrema salsugineum HOM05D004440 ORTHO05D005183 5.7e-35 151.4 98 76.5
Gohir.D07G226500 Gossypium hirsutum HOM05D004440 ORTHO05D005183 5.7e-35 151.4 98 76.5
Hma1.2p1_0993F.1_g245540 Hydrangea macrophylla HOM05D004440 ORTHO05D005183 5.7e-35 151.4 99 74.7
Hma1.2p1_2562F.1_g324430 Hydrangea macrophylla HOM05D004440 ORTHO05D005183 5.7e-35 151.4 99 74.7
BraA02t05244Z Brassica rapa HOM05D004440 ORTHO05D005183 7.5e-35 151.0 98 76.5
Haze_14668 Corylus avellana HOM05D004440 ORTHO05D005183 7.5e-35 151.0 99 75.8
Migut.H00121 Erythranthe guttata HOM05D004440 ORTHO05D005183 9.7e-35 150.6 99 73.7
HanXRQChr04g0103861 Helianthus annuus HOM05D004440 ORTHO05D005183 9.7e-35 150.6 99 72.7
Medtr6g007175 Medicago truncatula HOM05D004440 ORTHO05D005183 9.7e-35 150.6 98 76.5
Actinidia16933 Actinidia chinensis HOM05D004440 ORTHO05D005183 1.3e-34 150.2 99 75.8
ECA238G2781 Erigeron canadensis HOM05D004440 ORTHO05D005183 1.3e-34 150.2 99 72.7
unitig_62.g23157 Utricularia gibba HOM05D004440 ORTHO05D005183 1.3e-34 150.2 98 75.5
arahy.Tifrunner.gnm1.ann1.F0HZWU Arachis hypogaea HOM05D004440 ORTHO05D005183 1.7e-34 149.8 99 74.7
arahy.Tifrunner.gnm1.ann1.XDSK4Z Arachis hypogaea HOM05D004440 ORTHO05D005183 1.7e-34 149.8 99 74.7
Cfa007429 Carpinus fangiana HOM05D004440 ORTHO05D005183 1.7e-34 149.8 99 74.7
PSO170G5364 Papaver somniferum HOM05D004440 ORTHO05D005183 1.7e-34 149.8 99 74.7
vmacro05821 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 1.7e-34 149.8 99 72.7
Glyma.19G009100 Glycine max HOM05D004440 ORTHO05D005183 2.2e-34 149.4 99 74.7
THA.LOC104822387 Tarenaya hassleriana HOM05D004440 ORTHO05D005183 2.2e-34 149.4 98 75.5
CDE06G1412 Ceratophyllum demersum HOM05D004440 ORTHO05D005183 2.8e-34 149.1 99 71.7
Sp3g30980 Schrenkiella parvula HOM05D004440 ORTHO05D005183 2.8e-34 149.1 98 75.5
Atru.chr6.2295 Acer truncatum HOM05D004440 ORTHO05D005183 3.7e-34 148.7 99 74.7
vmacro05820 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 3.7e-34 148.7 99 71.7
HPP92_019950 Vanilla planifolia HOM05D004440 ORTHO05D005183 8.2e-34 147.5 98 74.5
Carub.0018s0004 Capsella rubella HOM05D004440 ORTHO05D005183 1.1e-33 147.1 94 74.5
MD17G1034800 Malus domestica HOM05D004440 ORTHO05D005183 1.1e-33 147.1 99 72.7
QL02p076678 Quercus lobata HOM05D004440 ORTHO05D005183 1.4e-33 146.7 99 72.7
Sed0024150 Sechium edule HOM05D004440 ORTHO05D005183 1.4e-33 146.7 99 74.7
MELO3C009956.2 Cucumis melo HOM05D004440 ORTHO05D005183 1.8e-33 146.4 99 74.7
Eucgr.J02207 Eucalyptus grandis HOM05D004440 ORTHO05D005183 1.8e-33 146.4 99 70.7
Psat1g056760 Pisum sativum HOM05D004440 ORTHO05D005183 1.8e-33 146.4 98 73.5
PGR083G1778 Punica granatum HOM05D004440 ORTHO05D005183 1.8e-33 146.4 98 72.4
Rhsim08G0055000 Rhododendron simsii HOM05D004440 ORTHO05D005183 1.8e-33 146.4 98 72.4
Psat1g058600 Pisum sativum HOM05D004440 ORTHO05D005183 2.4e-33 146.0 98 73.5
VMungo0464G1014 Vigna mungo HOM05D004440 ORTHO05D005183 2.4e-33 146.0 99 71.7
VMungo0464G1046 Vigna mungo HOM05D004440 ORTHO05D005183 2.4e-33 146.0 99 71.7
Zm00001eb382240 Zea mays HOM05D004440 ORTHO05D005183 2.4e-33 146.0 98 72.4
Glyma.13G168700 Glycine max HOM05D004440 ORTHO05D005183 3.1e-33 145.6 99 72.7
Glyma.19G009000 Glycine max HOM05D004440 ORTHO05D005183 3.1e-33 145.6 98 73.5
Eucgr.J02208 Eucalyptus grandis HOM05D004440 ORTHO05D005183 4.1e-33 145.2 99 69.7
vmacro18243 Vaccinium macrocarpon HOM05D004440 ORTHO05D005183 4.1e-33 145.2 98 72.4
CANSAT64G0084 Cannabis sativa HOM05D004440 ORTHO05D005183 5.3e-33 144.8 99 71.7
CsaV3_3G042420 Cucumis sativus L. HOM05D004440 ORTHO05D005183 5.3e-33 144.8 99 73.7
Eucgr.J02209 Eucalyptus grandis HOM05D004440 ORTHO05D005183 5.3e-33 144.8 99 70.7
Phvul.004G014600 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 5.3e-33 144.8 99 72.7
Phvul.004G014800 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 7.0e-33 144.4 99 70.7
Ca_27954_v3 Cicer arietinum L. HOM05D004440 ORTHO05D005183 9.1e-33 144.1 99 71.7
ClCG10G014220 Citrullus lanatus HOM05D004440 ORTHO05D005183 1.2e-32 143.7 99 72.7
Lj2g0017879 Lotus japonicus HOM05D004440 ORTHO05D005183 1.2e-32 143.7 99 71.7
VMungo0464G0725 Vigna mungo HOM05D004440 ORTHO05D005183 1.2e-32 143.7 99 69.7
TPR.G2289 Trifolium pratense HOM05D004440 ORTHO05D005183 2.7e-32 142.5 98 72.4
Sc15g0002660 Simmondsia chinensis HOM05D004440 ORTHO05D005183 3.5e-32 142.1 99 70.7
EL10Ac4g08574 Beta vulgaris HOM05D004440 ORTHO05D005183 4.5e-32 141.7 99 69.7
Lalb_Chr02g0160291 Lupinus albus HOM05D004440 ORTHO05D005183 5.9e-32 141.4 98 71.4
Medtr6g007170 Medicago truncatula HOM05D004440 ORTHO05D005183 5.9e-32 141.4 99 70.7
AUR62040327 Chenopodium quinoa HOM05D004440 ORTHO05D005183 1.3e-31 140.2 99 67.7
Os06g0486800 Oryza sativa ssp. japonica HOM05D004440 ORTHO05D005183 1.3e-31 140.2 98 70.4
Potri.014G161300 Populus trichocarpa HOM05D004440 ORTHO05D005183 1.7e-31 139.8 99 70.7
Os06g0486900 Oryza sativa ssp. japonica HOM05D004440 ORTHO05D005183 2.2e-31 139.4 98 68.4
AUR62043797 Chenopodium quinoa HOM05D004440 ORTHO05D005183 2.9e-31 139.0 99 66.7
Sabra14G0123000 Salix brachista HOM05D004440 ORTHO05D005183 2.9e-31 139.0 99 70.7
Pp3c16_11630 Physcomitrium patens HOM05D004440 ORTHO05D005183 1.5e-30 136.7 98 64.3
Mapoly0004s0175 Marchantia polymorpha HOM05D004440 ORTHO05D005183 7.2e-30 134.4 96 65.6
BcaNung03094 Brassica carinata HOM05D004440 ORTHO05D005183 1.8e-28 129.8 99 67.7
Lj7A591G80 Lonicera japonica HOM05D004440 ORTHO05D005183 1.5e-27 126.7 97 64.9
SMO116G0169 Selaginella moellendorffii HOM05D004440 ORTHO05D005183 3.4e-27 125.6 98 61.2
AagrBONN_evm.TU.Sc2ySwM_228.5137__5138 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-22 108.6 95 54.7
Cfa023380 Carpinus fangiana HOM05D004440 ORTHO05D005183 6.1e-21 104.8 96 54.2
Psat2g103360 Pisum sativum HOM05D004440 ORTHO05D005183 3.7e-18 95.5 59 83.1
Psat2g182560 Pisum sativum HOM05D004440 ORTHO05D005183 3.7e-18 95.5 59 83.1
Psat4g027200 Pisum sativum HOM05D004440 ORTHO05D005183 3.7e-18 95.5 59 83.1
Psat5g059520 Pisum sativum HOM05D004440 ORTHO05D005183 3.7e-18 95.5 59 83.1
Psat5g235800 Pisum sativum HOM05D000159 ORTHO05D005183 1.1e-17 94.0 59 79.7
Psat5g236000 Pisum sativum HOM05D004440 ORTHO05D005183 1.4e-17 93.6 59 81.4
Actinidia35741 Actinidia chinensis HOM05D004440 ORTHO05D005183 1.8e-17 93.2 54 87.0
Carub.0030s0001 Capsella rubella HOM05D004440 ORTHO05D005183 4.1e-17 92.0 92 51.1
Psat3g078960 Pisum sativum HOM05D004440 ORTHO05D005183 5.4e-17 91.7 59 79.7
CAN.G508.27 Capsicum annuum HOM05D001304 ORTHO05D005183 1.2e-16 90.5 57 82.5
Zm00001eb208450 Zea mays HOM05D004440 ORTHO05D005183 2.7e-16 89.4 54 81.5
Zm00001eb222940 Zea mays HOM05D004440 ORTHO05D005183 2.7e-16 89.4 54 81.5
Zm00001eb358390 Zea mays HOM05D004440 ORTHO05D005183 2.7e-16 89.4 54 81.5
Psat2g111320 Pisum sativum HOM05D004440 ORTHO05D005183 1.7e-15 86.7 59 74.6
Zm00001eb109380 Zea mays HOM05D004440 ORTHO05D005183 3.8e-15 85.5 54 77.8
Aa31LG11G14670 Aethionema arabicum HOM05D004440 ORTHO05D005183 2.1e-13 79.7 51 70.6
CAN.G991.2 Capsicum annuum HOM05D004440 ORTHO05D005183 3.6e-13 79.0 57 71.9
Zm00001eb053990 Zea mays HOM05D004440 ORTHO05D005183 2.3e-12 76.3 54 75.9
Lsat_1_v5_gn_1_95460 Lactuca sativa HOM05D004440 ORTHO05D005183 4.4e-11 72.0 38 76.3
PRCOL_00006211 Prasinoderma coloniale HOM05D004440 ORTHO05D005183 5.4e-09 65.1 94 40.4
Phvul.004G014666 Phaseolus vulgaris HOM05D004440 ORTHO05D005183 2.7e-08 62.8 34 73.5


User provided reference genes

Program Settings