Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026677 Solanum tuberosum HOM05D003561 ORTHO05D004351 5.3e-133 477.6 232 100.0
Solyc02g064800.3 Solanum lycopersicum HOM05D003561 ORTHO05D004351 2.8e-118 428.7 230 92.6
Sopen02g014910 Solanum pennellii HOM05D003561 ORTHO05D004351 2.8e-118 428.7 230 92.6
PGSC0003DMG400013016 Solanum tuberosum HOM05D003561 ORTHO05D004351 2.4e-117 425.6 231 91.8
CAN.G1482.2 Capsicum annuum HOM05D003561 ORTHO05D004351 6.5e-115 417.5 231 89.2
Peaxi162Scf00449g00016 Petunia axillaris HOM05D003561 ORTHO05D004351 8.8e-112 407.1 231 87.4
Nitab4.5_0000284g0010 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.4e-109 399.1 230 87.0
Nitab4.5_0000604g0020 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.8e-102 375.6 213 87.8
Oeu003572.1 Olea europaea HOM05D003561 ORTHO05D004351 3.8e-91 338.6 231 71.9
Hma1.2p1_0239F.1_g099850 Hydrangea macrophylla HOM05D003561 ORTHO05D004351 2.1e-89 332.8 231 71.9
CiPaw.01G008500 Carya illinoinensis HOM05D003561 ORTHO05D004351 2.3e-88 329.3 231 69.7
DCAR_010841 Daucus carota HOM05D003561 ORTHO05D004351 5.2e-88 328.2 231 68.8
Cfa004087 Carpinus fangiana HOM05D003561 ORTHO05D004351 6.8e-88 327.8 231 69.7
ECA238G3157 Erigeron canadensis HOM05D003561 ORTHO05D004351 8.9e-88 327.4 231 68.4
Actinidia12002 Actinidia chinensis HOM05D003561 ORTHO05D004351 2.6e-87 325.9 231 68.8
HanXRQChr14g0449611 Helianthus annuus HOM05D003561 ORTHO05D004351 5.7e-87 324.7 233 68.7
Thecc.01G067200 Theobroma cacao HOM05D003561 ORTHO05D004351 7.5e-87 324.3 231 67.1
SalBow1G5992 Salvia bowleyana HOM05D003561 ORTHO05D004351 1.3e-86 323.6 232 69.8
Lj7C86G5 Lonicera japonica HOM05D003561 ORTHO05D004351 2.9e-86 322.4 231 69.7
SGA_v2.0_scaffold143G35782 Striga asiatica HOM05D003561 ORTHO05D004351 4.9e-86 321.6 231 69.7
Prupe.6G225400 Prunus persica HOM05D003561 ORTHO05D004351 8.3e-86 320.9 231 67.5
Lsat_1_v5_gn_2_83541 Lactuca sativa HOM05D003561 ORTHO05D004351 1.4e-85 320.1 233 67.8
Cpa.g.sc6.62 Carica papaya HOM05D003561 ORTHO05D004351 3.2e-85 318.9 231 66.7
Manes.13G115200 Manihot esculenta HOM05D003561 ORTHO05D004351 3.2e-85 318.9 234 66.7
PGSC0003DMG400025758 Solanum tuberosum HOM05D003561 ORTHO05D004351 4.1e-85 318.5 231 68.4
Solyc01g107360.4 Solanum lycopersicum HOM05D003561 ORTHO05D004351 7.0e-85 317.8 231 68.4
Sopen01g049600 Solanum pennellii HOM05D003561 ORTHO05D004351 7.0e-85 317.8 231 68.4
Cc07_g06660 Coffea canephora HOM05D003561 ORTHO05D004351 9.2e-85 317.4 230 68.3
Gorai.003G028400 Gossypium raimondii HOM05D003561 ORTHO05D004351 9.2e-85 317.4 232 67.2
GSVIVG01000167001 Vitis vinifera HOM05D003561 ORTHO05D004351 9.2e-85 317.4 232 68.1
MD02G1180800 Malus domestica HOM05D003561 ORTHO05D004351 1.2e-84 317.0 231 66.7
Nitab4.5_0010275g0030 Nicotiana tabacum HOM05D003561 ORTHO05D004351 1.2e-84 317.0 231 68.0
COL.COLO4_11519 Corchorus olitorius HOM05D003561 ORTHO05D004351 2.0e-84 316.2 232 65.1
Haze_15327 Corylus avellana HOM05D003561 ORTHO05D004351 2.0e-84 316.2 247 65.6
Nitab4.5_0001480g0050 Nicotiana tabacum HOM05D003561 ORTHO05D004351 2.0e-84 316.2 231 67.5
Potri.007G051500 Populus trichocarpa HOM05D003561 ORTHO05D004351 2.7e-84 315.8 232 67.7
Gohir.D03G026700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 3.5e-84 315.5 232 66.8
Ciclev10024935m.g Citrus clementina HOM05D003561 ORTHO05D004351 5.9e-84 314.7 231 68.0
RcHm_v2.0_Chr2g0107231 Rosa chinensis HOM05D003561 ORTHO05D004351 5.9e-84 314.7 231 67.5
FAN19G0232 Fragaria x ananassa HOM05D003561 ORTHO05D004351 7.8e-84 314.3 231 68.4
CANSAT01G2799 Cannabis sativa HOM05D003561 ORTHO05D004351 1.0e-83 313.9 231 67.5
Gohir.A02G153700 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.3e-83 313.5 232 66.4
CSS0044154 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.7e-83 313.2 231 66.7
Rhsim10G0104800 Rhododendron simsii HOM05D003561 ORTHO05D004351 2.3e-83 312.8 231 66.7
FvH4_1g17060 Fragaria vesca HOM05D003561 ORTHO05D004351 5.0e-83 311.6 231 67.5
Nn5g30480 Nelumbo nucifera HOM05D003561 ORTHO05D004351 5.0e-83 311.6 231 67.1
Atru.chr3.215 Acer truncatum HOM05D003561 ORTHO05D004351 1.5e-82 310.1 231 66.7
Atru.chr3.226 Acer truncatum HOM05D003561 ORTHO05D004351 1.5e-82 310.1 231 66.7
Ah.03g146260 Amaranthus hybridus HOM05D003561 ORTHO05D004351 3.3e-82 308.9 231 64.5
Duzib147G0573 Durio zibethinus HOM05D003561 ORTHO05D004351 3.3e-82 308.9 231 64.5
Peaxi162Scf00016g02531 Petunia axillaris HOM05D003561 ORTHO05D004351 4.3e-82 308.5 231 66.2
Rhsim05G0089400 Rhododendron simsii HOM05D003561 ORTHO05D004351 4.3e-82 308.5 231 64.9
SalBow6G0742 Salvia bowleyana HOM05D003561 ORTHO05D004351 5.6e-82 308.1 231 65.4
SalBow6G5634 Salvia bowleyana HOM05D003561 ORTHO05D004351 5.6e-82 308.1 231 65.4
Dinv15779 Davidia involucrata HOM05D003561 ORTHO05D004351 7.3e-82 307.8 231 65.4
Hund13924 Selenicereus undatus HOM05D003561 ORTHO05D004351 7.3e-82 307.8 231 63.6
MSTRG.16699 Avicennia marina HOM05D003561 ORTHO05D004351 1.6e-81 306.6 231 64.9
Cc02_g19520 Coffea canephora HOM05D003561 ORTHO05D004351 1.6e-81 306.6 228 65.4
AUR62038271 Chenopodium quinoa HOM05D003561 ORTHO05D004351 3.6e-81 305.4 231 64.1
Migut.H00379 Erythranthe guttata HOM05D003561 ORTHO05D004351 3.6e-81 305.4 220 69.5
Hund29372 Selenicereus undatus HOM05D003561 ORTHO05D004351 6.2e-81 304.7 231 63.2
Hund29375 Selenicereus undatus HOM05D003561 ORTHO05D004351 6.2e-81 304.7 231 63.2
SGA_v2.0_scaffold225G43001 Striga asiatica HOM05D003561 ORTHO05D004351 6.2e-81 304.7 229 65.1
Migut.B00411 Erythranthe guttata HOM05D003561 ORTHO05D004351 8.0e-81 304.3 231 64.1
FAN24G1860 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-80 303.9 231 65.8
FAN27G2112 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.1e-80 303.9 231 65.8
Oeu011151.1 Olea europaea HOM05D003561 ORTHO05D004351 1.1e-80 303.9 229 65.5
Ciclev10027851m.g Citrus clementina HOM05D003561 ORTHO05D004351 1.8e-80 303.1 231 62.8
ECA236G4994 Erigeron canadensis HOM05D003561 ORTHO05D004351 1.8e-80 303.1 231 63.6
TAR381G0090 Trochodendron aralioides HOM05D003561 ORTHO05D004351 1.8e-80 303.1 230 66.1
Rhsim10G0161700 Rhododendron simsii HOM05D003561 ORTHO05D004351 3.1e-80 302.4 231 64.5
AUR62003959 Chenopodium quinoa HOM05D003561 ORTHO05D004351 4.0e-80 302.0 231 63.6
PSO675G3219 Papaver somniferum HOM05D003561 ORTHO05D004351 5.2e-80 301.6 233 63.5
Atru.chr5.2428 Acer truncatum HOM05D003561 ORTHO05D004351 6.8e-80 301.2 231 62.8
FAN15G0682 Fragaria x ananassa HOM05D003561 ORTHO05D004351 6.8e-80 301.2 231 65.4
Manes.10G073266 Manihot esculenta HOM05D003561 ORTHO05D004351 6.8e-80 301.2 231 62.8
PGR102G2010 Punica granatum HOM05D003561 ORTHO05D004351 6.8e-80 301.2 232 62.5
Aqoxy6G02799 Aquilegia oxysepala HOM05D003561 ORTHO05D004351 8.9e-80 300.8 231 64.5
Prupe.8G138700 Prunus persica HOM05D003561 ORTHO05D004351 8.9e-80 300.8 232 65.1
PGR042G0884 Punica granatum HOM05D003561 ORTHO05D004351 2.0e-79 299.7 232 62.5
TWI75G1561 Tripterygium wilfordii HOM05D003561 ORTHO05D004351 2.0e-79 299.7 231 63.6
PSO541G3211 Papaver somniferum HOM05D003561 ORTHO05D004351 2.6e-79 299.3 233 63.1
Thecc.02G112400 Theobroma cacao HOM05D003561 ORTHO05D004351 2.6e-79 299.3 232 62.1
MD05G1093800 Malus domestica HOM05D003561 ORTHO05D004351 3.4e-79 298.9 232 63.8
Potri.001G297600 Populus trichocarpa HOM05D003561 ORTHO05D004351 3.4e-79 298.9 231 63.2
Actinidia27978 Actinidia chinensis HOM05D003561 ORTHO05D004351 4.4e-79 298.5 231 63.6
Eucgr.H02268 Eucalyptus grandis HOM05D003561 ORTHO05D004351 4.4e-79 298.5 231 64.1
CSS0023905 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 5.8e-79 298.1 231 62.8
RcHm_v2.0_Chr6g0254331 Rosa chinensis HOM05D003561 ORTHO05D004351 5.8e-79 298.1 232 63.8
arahy.Tifrunner.gnm1.ann1.Q24X8K Arachis hypogaea HOM05D003561 ORTHO05D004351 1.3e-78 297.0 231 63.6
Thhalv10024491m.g Eutrema salsugineum HOM05D003561 ORTHO05D004351 1.3e-78 297.0 238 63.4
Gohir.A03G184800 Gossypium hirsutum HOM05D003561 ORTHO05D004351 1.7e-78 296.6 232 61.2
Gorai.005G233700 Gossypium raimondii HOM05D003561 ORTHO05D004351 1.7e-78 296.6 232 61.2
Gohir.D02G206300 Gossypium hirsutum HOM05D003561 ORTHO05D004351 2.2e-78 296.2 232 61.2
AUR62027366 Chenopodium quinoa HOM05D003561 ORTHO05D004351 2.9e-78 295.8 231 61.9
FAN26G2049 Fragaria x ananassa HOM05D003561 ORTHO05D004351 2.9e-78 295.8 215 68.8
arahy.Tifrunner.gnm1.ann1.IMHW03 Arachis hypogaea HOM05D003561 ORTHO05D004351 3.7e-78 295.4 231 63.2
Psat6g216560 Pisum sativum HOM05D003561 ORTHO05D004351 4.9e-78 295.0 231 63.6
Lj5g0023418 Lotus japonicus HOM05D003561 ORTHO05D004351 6.4e-78 294.7 231 63.2
Cfa004615 Carpinus fangiana HOM05D003561 ORTHO05D004351 8.3e-78 294.3 231 63.6
Eucgr.G01293 Eucalyptus grandis HOM05D003561 ORTHO05D004351 8.3e-78 294.3 229 63.8
A01p04120 Brassica napus HOM05D003561 ORTHO05D004351 1.1e-77 293.9 234 62.8
CiPaw.05G014100 Carya illinoinensis HOM05D003561 ORTHO05D004351 1.1e-77 293.9 232 62.9
AUR62031283 Chenopodium quinoa HOM05D003561 ORTHO05D004351 1.1e-77 293.9 231 61.5
BraA01t00401Z Brassica rapa HOM05D003561 ORTHO05D004351 1.4e-77 293.5 234 62.8
FvH4_2g04670 Fragaria vesca HOM05D003561 ORTHO05D004351 1.4e-77 293.5 231 63.6
FAN28G0575 Fragaria x ananassa HOM05D003561 ORTHO05D004351 1.4e-77 293.5 254 60.6
Hund06710 Selenicereus undatus HOM05D003561 ORTHO05D004351 1.4e-77 293.5 231 62.3
Duzib132G1062 Durio zibethinus HOM05D003561 ORTHO05D004351 1.9e-77 293.1 231 61.5
HanXRQChr04g0128551 Helianthus annuus HOM05D003561 ORTHO05D004351 1.9e-77 293.1 230 62.6
Lalb_Chr02g0145171 Lupinus albus HOM05D003561 ORTHO05D004351 1.9e-77 293.1 231 61.5
Rhsim10G0161500 Rhododendron simsii HOM05D003561 ORTHO05D004351 1.9e-77 293.1 211 68.2
Medtr1g106905 Medicago truncatula HOM05D003561 ORTHO05D004351 3.2e-77 292.4 231 62.3
QL11p032306 Quercus lobata HOM05D003561 ORTHO05D004351 4.1e-77 292.0 232 64.2
TPR.G27110 Trifolium pratense HOM05D003561 ORTHO05D004351 5.4e-77 291.6 231 62.3
Lsat_1_v5_gn_7_85901 Lactuca sativa HOM05D003561 ORTHO05D004351 7.0e-77 291.2 230 62.6
SEGI_36307 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 7.0e-77 291.2 237 59.1
Potri.009G092500 Populus trichocarpa HOM05D003561 ORTHO05D004351 1.2e-76 290.4 231 61.9
GSVIVG01037885001 Vitis vinifera HOM05D003561 ORTHO05D004351 1.2e-76 290.4 215 68.4
BcaNung04991 Brassica carinata HOM05D003561 ORTHO05D004351 2.0e-76 289.7 234 62.8
C01p04490 Brassica napus HOM05D003561 ORTHO05D004351 2.0e-76 289.7 234 62.8
BolC1t00435H Brassica oleracea HOM05D003561 ORTHO05D004351 2.0e-76 289.7 234 62.8
vmacro19460 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 2.0e-76 289.7 220 65.0
Ca_11052_v3 Cicer arietinum L. HOM05D003561 ORTHO05D004351 2.7e-76 289.3 231 61.5
Aa31sc72G40 Aethionema arabicum HOM05D003561 ORTHO05D004351 4.6e-76 288.5 234 61.5
FAN20G0240 Fragaria x ananassa HOM05D003561 ORTHO05D004351 6.0e-76 288.1 215 67.0
COL.COLO4_32560 Corchorus olitorius HOM05D003561 ORTHO05D004351 7.8e-76 287.7 214 65.0
CARHR242490 Cardamine hirsuta HOM05D003561 ORTHO05D004351 1.0e-75 287.3 234 60.7
Haze_10212 Corylus avellana HOM05D003561 ORTHO05D004351 1.3e-75 287.0 213 66.2
RcHm_v2.0_Chr6g0254291 Rosa chinensis HOM05D003561 ORTHO05D004351 1.3e-75 287.0 232 62.1
Sabra09G0071200 Salix brachista HOM05D003561 ORTHO05D004351 1.3e-75 287.0 231 61.0
Phvul.007G042500 Phaseolus vulgaris HOM05D003561 ORTHO05D004351 3.9e-75 285.4 231 62.3
VMungo0720G2973 Vigna mungo HOM05D003561 ORTHO05D004351 3.9e-75 285.4 231 62.3
Glyma.10G259600 Glycine max HOM05D003561 ORTHO05D004351 8.6e-75 284.3 231 61.9
Ah.09g232050 Amaranthus hybridus HOM05D003561 ORTHO05D004351 1.1e-74 283.9 230 61.7
Rhsim10G0162500 Rhododendron simsii HOM05D003561 ORTHO05D004351 9.5e-74 280.8 217 64.5
Glyma.20G131200 Glycine max HOM05D003561 ORTHO05D004351 1.6e-73 280.0 231 61.5
Carub.0007s0608 Capsella rubella HOM05D003561 ORTHO05D004351 4.7e-73 278.5 237 59.9
AL7G16990 Arabidopsis lyrata HOM05D003561 ORTHO05D004351 1.1e-72 277.3 238 58.4
SEGI_28319 Sequoiadendron giganteum HOM05D003561 ORTHO05D004351 1.4e-72 276.9 237 57.0
Lj5A216G104 Lonicera japonica HOM05D003561 ORTHO05D004351 5.2e-72 275.0 227 62.1
PRCOL_00006635 Prasinoderma coloniale HOM05D003561 ORTHO05D004351 8.9e-72 274.2 245 55.1
RcHm_v2.0_Chr6g0254371 Rosa chinensis HOM05D003561 ORTHO05D004351 4.9e-70 268.5 214 62.6
Pp3c18_4410 Physcomitrium patens HOM05D003561 ORTHO05D004351 9.2e-69 264.2 260 50.8
AagrBONN_evm.TU.Sc2ySwM_111.1 Anthoceros agrestis HOM05D003561 ORTHO05D004351 1.6e-68 263.5 239 56.1
Pp3c22_17660 Physcomitrium patens HOM05D003561 ORTHO05D004351 2.7e-68 262.7 265 50.6
THA.LOC104819541 Tarenaya hassleriana HOM05D003561 ORTHO05D004351 1.0e-67 260.8 236 56.8
Sp7g32080 Schrenkiella parvula HOM05D003561 ORTHO05D004351 1.1e-66 257.3 232 58.2
AT4G34280 Arabidopsis thaliana HOM05D003561 ORTHO05D004351 3.3e-66 255.8 237 55.7
SMO145G0124 Selaginella moellendorffii HOM05D003561 ORTHO05D004351 1.4e-61 240.4 232 50.9
BcaNung04160 Brassica carinata HOM05D003561 ORTHO05D004351 7.3e-58 228.0 195 60.0
EL10Ac6g15669 Beta vulgaris HOM05D003561 ORTHO05D004351 8.1e-49 198.0 231 45.9
DCAR_001664 Daucus carota HOM05D003561 ORTHO05D004351 3.1e-48 196.1 150 62.7
Cpa.g.sc292.9 Carica papaya HOM05D003561 ORTHO05D004351 4.0e-48 195.7 150 64.0
vmacro05379 Vaccinium macrocarpon HOM05D003561 ORTHO05D004351 7.6e-47 191.4 153 62.7
CSS0037584 Camellia sinensis var. sinensis HOM05D003561 ORTHO05D004351 1.7e-46 190.3 147 62.6
Oeu027122.1 Olea europaea HOM05D003561 ORTHO05D004351 2.1e-41 173.3 116 70.7
Dinv30056 Davidia involucrata HOM05D003561 ORTHO05D004351 1.8e-40 170.2 231 44.6
AagrBONN_evm.TU.Sc2ySwM_340.381 Anthoceros agrestis HOM05D003561 ORTHO05D004351 3.0e-35 152.9 114 64.9
BcaNung04992 Brassica carinata HOM05D003561 ORTHO05D004351 5.8e-31 138.7 102 68.6
Sc07g0000630 Simmondsia chinensis HOM05D003561 ORTHO05D004351 1.6e-28 130.6 112 57.1
Rhsim05G0089000 Rhododendron simsii HOM05D003561 ORTHO05D000355 5.9e-23 112.1 84 64.3
Cpa.g.sc3364.1 Carica papaya HOM05D003561 ORTHO05D004351 4.2e-21 105.9 82 62.2
Sc07g0000620 Simmondsia chinensis HOM05D003561 ORTHO05D004351 1.4e-19 100.9 103 48.5
QL11p032339 Quercus lobata HOM05D003561 ORTHO05D004351 2.5e-13 80.1 66 57.6
Nitab4.5_0005745g0040 Nicotiana tabacum HOM05D000836 ORTHO05D000709 5.0e-06 55.8 138 30.4
Nitab4.5_0027546g0010 Nicotiana tabacum HOM05D000836 ORTHO05D000709 6.5e-06 55.5 138 30.4


User provided reference genes

Program Settings