Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026517 Solanum tuberosum HOM05D007092 ORTHO05D008947 3.3e-192 674.9 334 100.0
Sopen06g022680 Solanum pennellii HOM05D007092 ORTHO05D008947 2.3e-182 642.1 330 95.8
Solyc06g063230.3 Solanum lycopersicum HOM05D007092 ORTHO05D008947 1.7e-180 636.0 327 96.0
Nitab4.5_0008628g0030 Nicotiana tabacum HOM05D007092 ORTHO05D008947 6.4e-156 554.3 345 82.0
Nitab4.5_0002661g0010 Nicotiana tabacum HOM05D007092 ORTHO05D008947 1.3e-151 540.0 347 80.4
Peaxi162Scf00207g01537 Petunia axillaris HOM05D007092 ORTHO05D008947 2.4e-126 456.1 355 68.7
Dinv37796 Davidia involucrata HOM05D007092 ORTHO05D008947 1.1e-110 404.1 260 70.0
Eucgr.F04011 Eucalyptus grandis HOM05D007092 ORTHO05D008947 1.2e-106 390.6 267 68.2
Nn2g12583 Nelumbo nucifera HOM05D007092 ORTHO05D008947 4.7e-106 388.7 260 69.2
Oeu049655.1 Olea europaea HOM05D007092 ORTHO05D008947 1.0e-105 387.5 275 66.9
VMungo0647G0167 Vigna mungo HOM05D007092 ORTHO05D008947 5.7e-104 381.7 282 63.1
Cc04_g00380 Coffea canephora HOM05D007092 ORTHO05D008947 7.5e-104 381.3 287 64.5
PGR102G2093 Punica granatum HOM05D007092 ORTHO05D008947 7.5e-104 381.3 265 66.8
HanXRQChr10g0311491 Helianthus annuus HOM05D007092 ORTHO05D008947 2.2e-103 379.8 293 61.1
Lsat_1_v5_gn_5_137421 Lactuca sativa HOM05D007092 ORTHO05D008947 2.2e-103 379.8 261 65.9
Ciclev10026125m.g Citrus clementina HOM05D007092 ORTHO05D008947 6.3e-103 378.3 295 62.7
CSS0038887 Camellia sinensis var. sinensis HOM05D007092 ORTHO05D008947 1.1e-102 377.5 294 63.3
arahy.Tifrunner.gnm1.ann1.U4SUAB Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-102 377.1 265 64.5
QL05p083231 Quercus lobata HOM05D007092 ORTHO05D008947 1.8e-102 376.7 262 66.4
ECA234G1665 Erigeron canadensis HOM05D007092 ORTHO05D008947 2.4e-102 376.3 269 63.2
Hma1.2p1_1104F.1_g257360 Hydrangea macrophylla HOM05D007092 ORTHO05D008947 2.4e-102 376.3 260 66.5
Phvul.008G255700 Phaseolus vulgaris HOM05D007092 ORTHO05D008947 2.4e-102 376.3 281 63.3
Thecc.06G015800 Theobroma cacao HOM05D007092 ORTHO05D008947 2.4e-102 376.3 256 66.8
Lalb_Chr04g0264731 Lupinus albus HOM05D007092 ORTHO05D008947 3.1e-102 375.9 273 63.7
RcHm_v2.0_Chr2g0150121 Rosa chinensis HOM05D007092 ORTHO05D008947 3.1e-102 375.9 281 63.3
Medtr4g006030 Medicago truncatula HOM05D007092 ORTHO05D008947 4.1e-102 375.6 264 65.5
GSVIVG01016136001 Vitis vinifera HOM05D007092 ORTHO05D008947 7.0e-102 374.8 257 66.5
arahy.Tifrunner.gnm1.ann1.2I6Q5Y Arachis hypogaea HOM05D007092 ORTHO05D008947 2.0e-101 373.2 265 64.2
TAR383G0306 Trochodendron aralioides HOM05D007092 ORTHO05D008947 3.5e-101 372.5 295 61.0
MD09G1158700 Malus domestica HOM05D007092 ORTHO05D008947 1.0e-100 370.9 268 63.1
TPR.G38753 Trifolium pratense HOM05D007092 ORTHO05D008947 5.0e-100 368.6 301 58.5
Actinidia21869 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.5e-99 367.1 278 63.3
Ca_20954_v3 Cicer arietinum L. HOM05D007092 ORTHO05D008947 1.5e-99 367.1 257 65.0
Carub.0002s1986 Capsella rubella HOM05D007092 ORTHO05D008947 1.9e-99 366.7 249 67.1
Manes.01G181400 Manihot esculenta HOM05D007092 ORTHO05D008947 5.5e-99 365.2 252 67.5
Sc12g0010950 Simmondsia chinensis HOM05D007092 ORTHO05D008947 5.5e-99 365.2 262 64.9
FvH4_6g37290 Fragaria vesca HOM05D007092 ORTHO05D008947 7.2e-99 364.8 281 61.6
Glyma.07G003900 Glycine max HOM05D007092 ORTHO05D008947 1.2e-98 364.0 256 64.5
AT1G73090 Arabidopsis thaliana HOM05D007092 ORTHO05D008947 3.6e-98 362.5 249 66.3
Lj3g0013116 Lotus japonicus HOM05D007092 ORTHO05D008947 3.6e-98 362.5 311 57.2
AL2G32840 Arabidopsis lyrata HOM05D007092 ORTHO05D008947 4.7e-98 362.1 249 66.3
Atru.chr1.2779 Acer truncatum HOM05D007092 ORTHO05D008947 6.1e-98 361.7 270 62.2
CANSAT01G0482 Cannabis sativa HOM05D007092 ORTHO05D008947 8.0e-98 361.3 271 61.6
PSO063G1240 Papaver somniferum HOM05D007092 ORTHO05D008947 1.8e-97 360.1 274 62.8
Prupe.3G167100 Prunus persica HOM05D007092 ORTHO05D008947 3.0e-97 359.4 260 63.8
Aa31LG4G3360 Aethionema arabicum HOM05D007092 ORTHO05D008947 1.5e-96 357.1 249 63.9
CARHR066060 Cardamine hirsuta HOM05D007092 ORTHO05D008947 2.6e-96 356.3 249 65.1
CsaV3_7G033820 Cucumis sativus L. HOM05D007092 ORTHO05D008947 3.4e-96 355.9 267 62.2
Aqoxy7G03199 Aquilegia oxysepala HOM05D007092 ORTHO05D008947 5.7e-96 355.1 272 60.7
Thhalv10018923m.g Eutrema salsugineum HOM05D007092 ORTHO05D008947 1.3e-95 354.0 249 65.5
Sp5g28050 Schrenkiella parvula HOM05D007092 ORTHO05D008947 1.7e-95 353.6 250 65.2
SalBow6G0042 Salvia bowleyana HOM05D007092 ORTHO05D008947 4.8e-95 352.1 273 59.3
Migut.I01177 Erythranthe guttata HOM05D007092 ORTHO05D008947 6.3e-95 351.7 262 63.4
A02p18440 Brassica napus HOM05D007092 ORTHO05D008947 1.1e-94 350.9 250 65.2
BraA02t06883Z Brassica rapa HOM05D007092 ORTHO05D008947 1.1e-94 350.9 250 65.2
Duzib160G0445 Durio zibethinus HOM05D007092 ORTHO05D008947 2.4e-94 349.7 255 64.3
ClCG09G001510 Citrullus lanatus HOM05D007092 ORTHO05D008947 4.5e-93 345.5 270 61.5
FAN02G1258 Fragaria x ananassa HOM05D007092 ORTHO05D008947 4.5e-93 345.5 319 54.9
BolC2t09103H Brassica oleracea HOM05D007092 ORTHO05D008947 1.0e-92 344.4 279 59.5
C02p30520 Brassica napus HOM05D007092 ORTHO05D008947 1.7e-92 343.6 280 59.6
ATR0580G293 Amborella trichopoda HOM05D007092 ORTHO05D008947 3.8e-92 342.4 270 60.0
EL10Ac7g18225 Beta vulgaris HOM05D007092 ORTHO05D008947 3.8e-92 342.4 297 57.9
Gohir.D10G007300 Gossypium hirsutum HOM05D007092 ORTHO05D008947 1.9e-91 340.1 232 68.1
Gorai.011G008000 Gossypium raimondii HOM05D007092 ORTHO05D008947 1.9e-91 340.1 236 67.4
Gohir.A10G007400 Gossypium hirsutum HOM05D007092 ORTHO05D008947 2.5e-91 339.7 234 69.2
MBI14_g30703_MAGBIO Magnolia biondii HOM05D007092 ORTHO05D008947 2.5e-91 339.7 356 52.2
Haze_15817 Corylus avellana HOM05D007092 ORTHO05D008947 3.6e-90 335.9 268 60.4
AUR62025584 Chenopodium quinoa HOM05D007092 ORTHO05D008947 4.0e-89 332.4 303 53.8
COL.COLO4_22872 Corchorus olitorius HOM05D007092 ORTHO05D008947 7.5e-88 328.2 278 59.0
Sed0004999 Sechium edule HOM05D007092 ORTHO05D008947 7.5e-88 328.2 232 65.1
Potri.010G250100 Populus trichocarpa HOM05D007092 ORTHO05D008947 1.8e-86 323.6 265 60.0
Sabra10G0194500 Salix brachista HOM05D007092 ORTHO05D008947 1.6e-85 320.5 265 60.0
Hund18612 Selenicereus undatus HOM05D007092 ORTHO05D008947 1.7e-84 317.0 274 58.4
HPP92_017449 Vanilla planifolia HOM05D007092 ORTHO05D008947 1.5e-83 313.9 275 53.1
THA.LOC104823333 Tarenaya hassleriana HOM05D007092 ORTHO05D008947 6.1e-82 308.5 246 58.9
MELO3C024294.2 Cucumis melo HOM05D007092 ORTHO05D008947 1.2e-80 304.3 262 57.6
unitig_748.g7475 Utricularia gibba HOM05D007092 ORTHO05D008947 1.6e-77 293.9 252 56.3
arahy.Tifrunner.gnm1.ann1.65RD4S Arachis hypogaea HOM05D007092 ORTHO05D008947 3.3e-75 286.2 208 61.5
Lj6C21G9 Lonicera japonica HOM05D007092 ORTHO05D008947 1.2e-74 284.3 279 52.3
AUR62001368 Chenopodium quinoa HOM05D007092 ORTHO05D008947 1.4e-73 280.8 281 50.5
SGA_v2.0_scaffold122G33289 Striga asiatica HOM05D002895 ORTHO05D003286 1.5e-72 277.3 220 60.0
CDE07G2035 Ceratophyllum demersum HOM05D007092 ORTHO05D008947 2.3e-68 263.5 312 46.5
Lj6C3G1 Lonicera japonica HOM05D000076 ORTHO05D001279 1.0e-60 238.0 269 46.5
Hund18613 Selenicereus undatus HOM05D007092 ORTHO05D008947 2.1e-53 213.8 180 56.7
Psat7g263560 Pisum sativum HOM05D007092 ORTHO05D008947 2.7e-53 213.4 156 64.1
Mapoly0073s0046 Marchantia polymorpha HOM05D007092 ORTHO05D008947 4.3e-51 206.1 280 40.7
AagrBONN_evm.TU.Sc2ySwM_344.2112 Anthoceros agrestis HOM05D007092 ORTHO05D008947 6.2e-50 202.2 297 37.7
Cfa021192 Carpinus fangiana HOM05D007092 ORTHO05D008947 1.4e-49 201.1 132 65.9
Pp3c13_10570 Physcomitrium patens HOM05D007092 ORTHO05D008947 3.8e-47 193.0 255 39.6
SMO230G0107 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 1.8e-41 174.1 269 37.2
FAN09G2007 Fragaria x ananassa HOM05D007092 ORTHO05D008947 4.9e-39 166.0 148 60.1
arahy.Tifrunner.gnm1.ann1.NXC5E0 Arachis hypogaea HOM05D007092 ORTHO05D008947 2.1e-37 160.6 106 64.2
C02p30540 Brassica napus HOM05D007092 ORTHO05D008947 3.9e-36 156.4 107 65.4
arahy.Tifrunner.gnm1.ann1.DEI7NY Arachis hypogaea HOM05D007092 ORTHO05D008947 1.1e-30 138.3 83 69.9
SMO336G0036 Selaginella moellendorffii HOM05D007092 ORTHO05D008947 1.1e-27 128.3 301 30.6
Glyma.08G222700 Glycine max HOM05D007092 ORTHO05D008947 7.4e-27 125.6 83 66.3
RcHm_v2.0_Chr1g0381181 Rosa chinensis HOM05D007092 ORTHO05D008947 2.4e-25 120.6 137 53.3
SEGI_20536 Sequoiadendron giganteum HOM05D007092 ORTHO05D008947 1.5e-24 117.9 84 61.9
Lj6A3T47 Lonicera japonica HOM05D007092 ORTHO05D008947 2.3e-20 104.0 61 67.2
arahy.Tifrunner.gnm1.ann1.QYJ7WZ Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-17 94.7 72 65.3
arahy.Tifrunner.gnm1.ann1.TPQB3Q Arachis hypogaea HOM05D007092 ORTHO05D008947 1.4e-17 94.7 72 65.3
arahy.Tifrunner.gnm1.ann1.BLVE7G Arachis hypogaea HOM05D007092 ORTHO05D008947 6.9e-17 92.4 52 73.1
arahy.Tifrunner.gnm1.ann1.LQFB73 Arachis hypogaea HOM05D007092 ORTHO05D008947 6.9e-17 92.4 52 73.1
Cpa.g.sc1009.2 Carica papaya HOM05D007092 ORTHO05D008947 1.2e-16 91.7 51 82.4
BcaC07g40307 Brassica carinata HOM05D007092 ORTHO05D008947 4.6e-13 79.7 60 56.7
arahy.Tifrunner.gnm1.ann1.KBSP04 Arachis hypogaea HOM05D002221 ORTHO05D002626 8.2e-10 68.9 46 58.7
arahy.Tifrunner.gnm1.ann1.R6H1XR Arachis hypogaea HOM05D002221 ORTHO05D002626 8.2e-10 68.9 46 58.7
Actinidia21637 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.8e-09 67.8 70 54.3
BcaB05g22026 Brassica carinata HOM05D007092 ORTHO05D008947 2.4e-09 67.4 65 46.2
Actinidia38794 Actinidia chinensis HOM05D007092 ORTHO05D008947 1.7e-07 61.2 52 53.8
arahy.Tifrunner.gnm1.ann1.AT2CXE Arachis hypogaea HOM05D007092 ORTHO05D008947 3.8e-07 60.1 43 55.8
SEGI_38624 Sequoiadendron giganteum HOM05D007092 ORTHO05D050975 5.0e-07 59.7 46 54.3
Cpa.g.sc3948.1 Carica papaya HOM05D007092 ORTHO05D008947 1.9e-06 57.8 32 71.9
Cre06.g248750 Chlamydomonas reinhardtii HOM05D060812 ORTHO05D008947 5.5e-06 56.2 76 39.5


User provided reference genes

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