Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026512 Solanum tuberosum HOM05D009551 ORTHO05D008048 5.0e-88 327.8 172 100.0
Sopen06g022770 Solanum pennellii HOM05D009551 ORTHO05D008048 1.4e-77 293.1 174 92.0
Solyc06g063300.4 Solanum lycopersicum HOM05D006700 ORTHO05D008196 5.2e-61 238.0 148 89.2
Nitab4.5_0002354g0030 Nicotiana tabacum HOM05D006700 ORTHO05D008196 5.3e-45 184.9 138 73.9
Nitab4.5_0003757g0050 Nicotiana tabacum HOM05D006700 ORTHO05D008196 2.4e-42 176.0 134 73.1
Prupe.3G021100 Prunus persica HOM05D019125 ORTHO05D022577 5.1e-16 88.6 147 40.8
Manes.14G007700 Manihot esculenta HOM05D009551 ORTHO05D008048 3.7e-14 82.4 97 45.4
Lj3g0024474 Lotus japonicus HOM05D014935 ORTHO05D008048 7.7e-12 74.7 148 37.2
TWI79G0560 Tripterygium wilfordii HOM05D008407 ORTHO05D008048 1.7e-11 73.6 160 34.4
Potri.010G252700 Populus trichocarpa HOM05D009551 ORTHO05D008048 3.8e-11 72.4 119 39.5
Atru.chr1.2734 Acer truncatum HOM05D009551 ORTHO05D008048 2.1e-09 66.6 89 46.1
TPR.G38723 Trifolium pratense HOM05D014935 ORTHO05D008048 2.1e-09 66.6 110 40.0
TWI12G0637 Tripterygium wilfordii HOM05D009551 ORTHO05D008048 2.1e-09 66.6 149 32.9
Hma1.2p1_0375F.1_g138780 Hydrangea macrophylla HOM05D008407 ORTHO05D008048 2.7e-09 66.2 153 32.7
BcaC05g25541 Brassica carinata HOM05D009551 ORTHO05D008048 3.6e-09 65.9 98 42.9
C05p15070 Brassica napus HOM05D009551 ORTHO05D008048 3.6e-09 65.9 98 42.9
BolC5t30222H Brassica oleracea HOM05D009551 ORTHO05D008048 3.6e-09 65.9 98 42.9
Migut.D00891 Erythranthe guttata HOM05D009551 ORTHO05D008048 4.7e-09 65.5 149 37.6
BcaB02g09833 Brassica carinata HOM05D011184 ORTHO05D008048 1.8e-08 63.5 152 32.9
Haze_25053 Corylus avellana HOM05D008407 ORTHO05D008048 1.8e-08 63.5 148 35.8
Medtr4g005500 Medicago truncatula HOM05D014935 ORTHO05D008048 1.8e-08 63.5 123 35.0
Sabra05G0069800 Salix brachista HOM05D008407 ORTHO05D008048 1.8e-08 63.5 158 32.3
C08p44220 Brassica napus HOM05D009551 ORTHO05D008048 2.3e-08 63.2 133 33.8
BraA06t26099Z Brassica rapa HOM05D006130 ORTHO05D007491 3.0e-08 62.8 99 40.4
BolC8t51968H Brassica oleracea HOM05D009551 ORTHO05D008048 3.9e-08 62.4 104 37.5
Haze_25045 Corylus avellana HOM05D008407 ORTHO05D008048 3.9e-08 62.4 148 35.8
Prupe.6G170400 Prunus persica HOM05D008407 ORTHO05D008048 3.9e-08 62.4 127 33.9
A09p60720 Brassica napus HOM05D009551 ORTHO05D008048 6.7e-08 61.6 119 33.6
BolC3t18394H Brassica oleracea HOM05D011184 ORTHO05D008048 6.7e-08 61.6 99 38.4
BcaC07g41453 Brassica carinata HOM05D009551 ORTHO05D008048 8.8e-08 61.2 104 37.5
Duzib147G1678 Durio zibethinus HOM05D008407 ORTHO05D008048 8.8e-08 61.2 100 42.0
QL06p031965 Quercus lobata HOM05D008407 ORTHO05D008048 1.1e-07 60.8 151 34.4
BcaB02g06671 Brassica carinata HOM05D009551 ORTHO05D008048 2.0e-07 60.1 86 41.9
Lj4g0011503 Lotus japonicus HOM05D008407 ORTHO05D008048 2.0e-07 60.1 145 31.7
BcaC01g02716 Brassica carinata HOM05D006130 ORTHO05D007491 2.6e-07 59.7 99 37.4
C03p61340 Brassica napus HOM05D011184 ORTHO05D008048 2.6e-07 59.7 99 37.4
THA.LOC104808101 Tarenaya hassleriana HOM05D009551 ORTHO05D008048 2.6e-07 59.7 94 37.2
TPR.G2192 Trifolium pratense HOM05D008407 ORTHO05D008048 2.6e-07 59.7 155 32.3
A06p12760 Brassica napus HOM05D009551 ORTHO05D008048 3.3e-07 59.3 86 40.7
BraA06t24436Z Brassica rapa HOM05D009551 ORTHO05D008048 3.3e-07 59.3 86 40.7
Carub.0001s1659 Capsella rubella HOM05D009551 ORTHO05D008048 5.7e-07 58.5 167 26.3
AT1G16850 Arabidopsis thaliana HOM05D009551 ORTHO05D008048 7.4e-07 58.2 108 31.5
A06p31620 Brassica napus HOM05D011184 ORTHO05D008048 7.4e-07 58.2 99 38.4
CiPaw.03G133800 Carya illinoinensis HOM05D008407 ORTHO05D008048 1.3e-06 57.4 96 38.5
Sp2g27900 Schrenkiella parvula HOM05D011184 ORTHO05D008048 1.3e-06 57.4 152 29.6
CARHR017320 Cardamine hirsuta HOM05D009551 ORTHO05D008048 1.7e-06 57.0 90 36.7
CARHR278830 Cardamine hirsuta HOM05D011184 ORTHO05D008048 2.2e-06 56.6 151 33.8
Dinv19478 Davidia involucrata HOM05D008407 ORTHO05D008048 2.8e-06 56.2 149 33.6
Medtr4g094508 Medicago truncatula HOM05D014935 ORTHO05D008048 2.8e-06 56.2 152 31.6
BcaC03g18280 Brassica carinata HOM05D011184 ORTHO05D008048 3.7e-06 55.8 71 46.5
C02p63590 Brassica napus HOM05D011184 ORTHO05D008048 3.7e-06 55.8 71 46.5
AL1G29020 Arabidopsis lyrata HOM05D009551 ORTHO05D008048 4.8e-06 55.5 91 33.0
Carub.0008s2565 Capsella rubella HOM05D011184 ORTHO05D008048 4.8e-06 55.5 148 32.4
ClCG01G016050 Citrullus lanatus HOM05D008407 ORTHO05D008048 4.8e-06 55.5 99 42.4
THA.LOC104799297 Tarenaya hassleriana HOM05D011184 ORTHO05D008048 6.3e-06 55.1 101 40.6


User provided reference genes

Program Settings