Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026496 Solanum tuberosum HOM05D004937 ORTHO05D006414 6.3e-41 170.2 81 100.0
PGSC0003DMG400019871 Solanum tuberosum HOM05D004937 ORTHO05D006414 8.6e-38 159.8 78 96.2
Sopen02g011270 Solanum pennellii HOM05D004937 ORTHO05D006414 9.5e-37 156.4 78 93.6
Peaxi162Scf00307g01425 Petunia axillaris HOM05D004937 ORTHO05D006414 6.1e-36 153.7 78 91.0
Peaxi162Scf00394g00019 Petunia axillaris HOM05D004937 ORTHO05D006414 6.1e-36 153.7 78 91.0
Solyc02g032870.4 Solanum lycopersicum HOM05D004937 ORTHO05D006414 8.0e-36 153.3 78 92.3
Nitab4.5_0011734g0010 Nicotiana tabacum HOM05D004937 ORTHO05D006414 3.0e-35 151.4 78 89.7
Nitab4.5_0000005g0300 Nicotiana tabacum HOM05D004937 ORTHO05D006414 8.8e-35 149.8 78 88.5
CSS0033735 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.7e-31 138.3 79 79.7
MD10G1323300 Malus domestica HOM05D004937 ORTHO05D006414 1.1e-29 132.9 72 81.9
Ciclev10014440m.g Citrus clementina HOM05D004937 ORTHO05D006414 5.6e-29 130.6 75 76.0
Cc09_g01540 Coffea canephora HOM05D004937 ORTHO05D000904 5.6e-29 130.6 75 73.3
DCAR_024931 Daucus carota HOM05D004937 ORTHO05D006414 7.3e-29 130.2 78 73.1
Nn1g07169 Nelumbo nucifera HOM05D004937 ORTHO05D006414 1.2e-28 129.4 76 78.9
vmacro15793 Vaccinium macrocarpon HOM05D004937 ORTHO05D006414 1.6e-28 129.0 78 76.9
DCAR_028195 Daucus carota HOM05D004937 ORTHO05D006414 2.1e-28 128.6 78 71.8
Lj1A1232T94 Lonicera japonica HOM05D004937 ORTHO05D006414 2.1e-28 128.6 75 77.3
Rhsim02G0106300 Rhododendron simsii HOM05D004937 ORTHO05D006414 2.1e-28 128.6 78 74.4
RcHm_v2.0_Chr5g0002731 Rosa chinensis HOM05D004937 ORTHO05D006414 2.8e-28 128.3 78 73.1
CANSAT56G3877 Cannabis sativa HOM05D004937 ORTHO05D006414 4.7e-28 127.5 78 71.8
FAN21G0664 Fragaria x ananassa HOM05D004937 ORTHO05D006414 4.7e-28 127.5 78 73.1
TAR624G0274 Trochodendron aralioides HOM05D004937 ORTHO05D006414 6.1e-28 127.1 78 75.6
COL.COLO4_31792 Corchorus olitorius HOM05D004937 ORTHO05D006414 8.0e-28 126.7 78 75.6
Hma1.2p1_3370F.1_g335650 Hydrangea macrophylla HOM05D004937 ORTHO05D006414 8.0e-28 126.7 69 79.7
Potri.004G010400 Populus trichocarpa HOM05D004937 ORTHO05D006414 1.0e-27 126.3 75 77.3
Haze_06813 Corylus avellana HOM05D004937 ORTHO05D006414 1.4e-27 125.9 75 78.7
MELO3C002448.2 Cucumis melo HOM05D004937 ORTHO05D006414 1.4e-27 125.9 75 74.7
FvH4_3g01860 Fragaria vesca HOM05D004937 ORTHO05D006414 1.4e-27 125.9 78 71.8
Prupe.4G019000 Prunus persica HOM05D004937 ORTHO05D006414 1.4e-27 125.9 75 76.0
CiPaw.09G093200 Carya illinoinensis HOM05D004937 ORTHO05D006414 1.8e-27 125.6 75 73.3
QL05p072835 Quercus lobata HOM05D004937 ORTHO05D006414 1.8e-27 125.6 78 73.1
Sabra04G0005400 Salix brachista HOM05D004937 ORTHO05D006414 1.8e-27 125.6 75 77.3
Sed0013617 Sechium edule HOM05D004937 ORTHO05D006414 4.0e-27 124.4 75 74.7
Eucgr.D01342 Eucalyptus grandis HOM05D004937 ORTHO05D006414 5.2e-27 124.0 74 75.7
Aqoxy1G02086 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 6.8e-27 123.6 78 71.8
ECA236G0630 Erigeron canadensis HOM05D004937 ORTHO05D006414 6.8e-27 123.6 76 73.7
GSVIVG01012711001 Vitis vinifera HOM05D004937 ORTHO05D000904 6.8e-27 123.6 74 77.0
Potri.004G010900 Populus trichocarpa HOM05D004937 ORTHO05D006414 8.9e-27 123.2 75 76.0
Thecc.06G222700 Theobroma cacao HOM05D004937 ORTHO05D006414 8.9e-27 123.2 78 73.1
arahy.Tifrunner.gnm1.ann1.L1792D Arachis hypogaea HOM05D004937 ORTHO05D006414 1.5e-26 122.5 75 76.0
arahy.Tifrunner.gnm1.ann1.VWCB5J Arachis hypogaea HOM05D004937 ORTHO05D006414 1.5e-26 122.5 75 76.0
HanXRQChr15g0470651 Helianthus annuus HOM05D004937 ORTHO05D006414 2.0e-26 122.1 75 74.7
PGR042G1615 Punica granatum HOM05D004937 ORTHO05D006414 2.6e-26 121.7 75 74.7
Sed0026378 Sechium edule HOM05D004937 ORTHO05D006414 2.6e-26 121.7 75 72.0
Hund23457 Selenicereus undatus HOM05D004937 ORTHO05D006414 2.6e-26 121.7 75 70.7
CsaV3_1G010670 Cucumis sativus L. HOM05D004937 ORTHO05D006414 3.4e-26 121.3 73 74.0
Lj4g0022599 Lotus japonicus HOM05D004937 ORTHO05D006414 4.4e-26 120.9 75 74.7
VMungo1215G2760 Vigna mungo HOM05D004937 ORTHO05D006414 4.4e-26 120.9 78 70.5
EL10Ac8g20076 Beta vulgaris HOM05D004937 ORTHO05D006414 7.5e-26 120.2 75 73.3
HPP92_001597 Vanilla planifolia HOM05D004937 ORTHO05D006414 9.8e-26 119.8 78 67.9
Glyma.17G012400 Glycine max HOM05D004937 ORTHO05D006414 1.3e-25 119.4 78 71.8
Glyma.07G261700 Glycine max HOM05D004937 ORTHO05D006414 1.7e-25 119.0 78 70.5
Manes.16G005800 Manihot esculenta HOM05D004937 ORTHO05D006414 1.7e-25 119.0 78 69.2
TPR.G22185 Trifolium pratense HOM05D004937 ORTHO05D006414 1.7e-25 119.0 75 74.7
Cpa.g.sc152.26 Carica papaya HOM05D004937 ORTHO05D006414 2.9e-25 118.2 75 72.0
TWI63G0901 Tripterygium wilfordii HOM05D004937 ORTHO05D006414 2.9e-25 118.2 76 73.7
HPP92_001591 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.7e-25 117.9 78 66.7
AL1G22990 Arabidopsis lyrata HOM05D004937 ORTHO05D006414 4.9e-25 117.5 76 72.4
QL05p072858 Quercus lobata HOM05D004937 ORTHO05D006414 4.9e-25 117.5 78 71.8
AT1G11800 Arabidopsis thaliana HOM05D004937 ORTHO05D006414 6.4e-25 117.1 76 72.4
Sp1g10430 Schrenkiella parvula HOM05D004937 ORTHO05D006414 6.4e-25 117.1 75 69.3
MSTRG.15996 Avicennia marina HOM05D004937 ORTHO05D006414 8.3e-25 116.7 72 70.8
ClCG03G004640 Citrullus lanatus HOM05D004937 ORTHO05D006414 8.3e-25 116.7 69 76.8
Lsat_1_v5_gn_7_16360 Lactuca sativa HOM05D004937 ORTHO05D006414 8.3e-25 116.7 77 68.8
Thhalv10006713m.g Eutrema salsugineum HOM05D004937 ORTHO05D000904 1.4e-24 115.9 75 69.3
THA.LOC104809500 Tarenaya hassleriana HOM05D004937 ORTHO05D006414 1.8e-24 115.5 75 72.0
A09p64340 Brassica napus HOM05D004937 ORTHO05D007797 2.4e-24 115.2 75 69.3
BraA09t41776Z Brassica rapa HOM05D004937 ORTHO05D006414 2.4e-24 115.2 75 69.3
Gohir.D06G214000 Gossypium hirsutum HOM05D004937 ORTHO05D006414 3.2e-24 114.8 74 73.0
Gorai.010G252100 Gossypium raimondii HOM05D004937 ORTHO05D006414 3.2e-24 114.8 74 73.0
HanXRQChr05g0129391 Helianthus annuus HOM05D004937 ORTHO05D006414 4.1e-24 114.4 77 71.4
Medtr4g132300 Medicago truncatula HOM05D004937 ORTHO05D006414 4.1e-24 114.4 75 70.7
BcaC07g41758 Brassica carinata HOM05D004937 ORTHO05D006414 5.4e-24 114.0 75 68.0
Ca_21076_v3 Cicer arietinum L. HOM05D004937 ORTHO05D006414 5.4e-24 114.0 75 72.0
C08p47960 Brassica napus HOM05D004937 ORTHO05D006414 7.0e-24 113.6 75 68.0
BolC8t52333H Brassica oleracea HOM05D004937 ORTHO05D006414 7.0e-24 113.6 75 68.0
Migut.M01330 Erythranthe guttata HOM05D004937 ORTHO05D000904 7.0e-24 113.6 72 70.8
PSO017G1772 Papaver somniferum HOM05D004937 ORTHO05D006414 7.0e-24 113.6 79 69.6
PSO675G7903 Papaver somniferum HOM05D004937 ORTHO05D006414 7.0e-24 113.6 80 68.8
Gohir.A06G207300 Gossypium hirsutum HOM05D004937 ORTHO05D006414 9.2e-24 113.2 74 71.6
Lalb_Chr12g0196051 Lupinus albus HOM05D004937 ORTHO05D006414 9.2e-24 113.2 73 72.6
PSO675G1521 Papaver somniferum HOM05D004937 ORTHO05D006414 9.2e-24 113.2 80 68.8
SalBow8G2768 Salvia bowleyana HOM05D004937 ORTHO05D006414 9.2e-24 113.2 73 72.6
Zm00001eb043220 Zea mays HOM05D004937 ORTHO05D006414 9.2e-24 113.2 78 65.4
PSO541G5924 Papaver somniferum HOM05D004937 ORTHO05D006414 1.2e-23 112.8 80 68.8
BcaB08g37429 Brassica carinata HOM05D004937 ORTHO05D006414 1.6e-23 112.5 75 66.7
Psat4g006200 Pisum sativum HOM05D004937 ORTHO05D006414 1.6e-23 112.5 75 70.7
unitig_748.g7590 Utricularia gibba HOM05D004937 ORTHO05D006414 1.6e-23 112.5 73 68.5
Aa31LG1G2970 Aethionema arabicum HOM05D004937 ORTHO05D006414 3.5e-23 111.3 75 66.7
Carub.0001s1147 Capsella rubella HOM05D004937 ORTHO05D006414 3.5e-23 111.3 75 69.3
PSO541G2704 Papaver somniferum HOM05D004937 ORTHO05D006414 3.5e-23 111.3 80 67.5
Phvul.003G080000 Phaseolus vulgaris HOM05D004937 ORTHO05D006414 3.5e-23 111.3 78 65.4
Os12g0414900 Oryza sativa ssp. japonica HOM05D004937 ORTHO05D006414 1.7e-22 109.0 78 62.8
CARHR012140 Cardamine hirsuta HOM05D004937 ORTHO05D006414 3.9e-22 107.8 75 66.7
SHI02217 Sapria himalayana HOM05D004937 ORTHO05D006414 5.0e-22 107.5 75 62.7
SEGI_33731 Sequoiadendron giganteum HOM05D004937 ORTHO05D006414 6.6e-22 107.1 74 66.2
AUR62021933 Chenopodium quinoa HOM05D004937 ORTHO05D006414 1.5e-21 105.9 72 69.4
Sc24g0000210 Simmondsia chinensis HOM05D004937 ORTHO05D006414 1.5e-21 105.9 72 63.9
ATR0794G089 Amborella trichopoda HOM05D004937 ORTHO05D006414 1.9e-21 105.5 74 64.9
AagrBONN_evm.TU.Sc2ySwM_368.2060 Anthoceros agrestis HOM05D004937 ORTHO05D006414 2.5e-21 105.1 75 61.3
AUR62012723 Chenopodium quinoa HOM05D004937 ORTHO05D006414 7.3e-21 103.6 72 70.8
Pp3c20_16850 Physcomitrium patens HOM05D004937 ORTHO05D006414 6.2e-20 100.5 74 62.2
SMO361G0593 Selaginella moellendorffii HOM05D004937 ORTHO05D006414 8.0e-20 100.1 74 60.8
Mapoly0028s0073 Marchantia polymorpha HOM05D004937 ORTHO05D006414 1.8e-19 99.0 74 59.5
CDE02G2441 Ceratophyllum demersum HOM05D004937 ORTHO05D006414 3.1e-19 98.2 71 63.4
Psat6g178560 Pisum sativum HOM05D004937 ORTHO05D006414 6.8e-19 97.1 75 60.0
Haze_06812 Corylus avellana HOM05D004937 ORTHO05D006414 2.0e-18 95.5 72 66.7
Migut.M01331 Erythranthe guttata HOM05D004937 ORTHO05D006414 2.6e-18 95.1 62 69.4
Zm00001eb048580 Zea mays HOM05D004937 ORTHO05D006414 2.2e-17 92.0 64 62.5
CBR_g38366 Chara braunii HOM05D004937 ORTHO05D006414 2.9e-17 91.7 78 52.6
QL05p072840 Quercus lobata HOM05D004937 ORTHO05D006414 1.1e-16 89.7 72 63.9
CSS0005056 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 1.9e-16 89.0 49 77.6
Dinv13907 Davidia involucrata HOM05D004937 ORTHO05D006414 3.2e-16 88.2 77 54.5
Dinv20060 Davidia involucrata HOM05D004937 ORTHO05D006414 1.0e-14 83.2 81 55.6
Ah.14g087960 Amaranthus hybridus HOM05D004937 ORTHO05D006414 1.9e-13 79.0 49 71.4
HPP92_014181 Vanilla planifolia HOM05D004937 ORTHO05D006414 3.7e-09 64.7 74 47.3
CSS0029720 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 2.4e-08 62.0 70 50.0
Mapoly0074s0008 Marchantia polymorpha HOM05D004937 ORTHO05D006414 4.1e-08 61.2 71 42.3
CSS0048087 Camellia sinensis var. sinensis HOM05D004937 ORTHO05D006414 7.1e-08 60.5 70 48.6
Aqoxy3G03726 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 1.7e-06 55.8 77 41.6
Aqoxy3G02634 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.1e-06 54.3 77 40.3
Aqoxy5G03390 Aquilegia oxysepala HOM05D004937 ORTHO05D006414 5.1e-06 54.3 76 40.8


User provided reference genes

Program Settings