Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026426 Solanum tuberosum HOM05D004482 ORTHO05D005212 6.9e-221 770.4 404 100.0
Sopen09g034910 Solanum pennellii HOM05D004482 ORTHO05D005212 3.3e-162 575.5 314 97.5
Solyc09g092030.4 Solanum lycopersicum HOM05D004482 ORTHO05D005212 6.1e-161 571.2 314 96.8
CAN.G1333.13 Capsicum annuum HOM05D004482 ORTHO05D005212 3.1e-144 515.8 314 88.9
Nitab4.5_0000401g0030 Nicotiana tabacum HOM05D004482 ORTHO05D005212 8.9e-144 514.2 316 88.9
Nitab4.5_0006210g0070 Nicotiana tabacum HOM05D004482 ORTHO05D005212 3.2e-141 505.8 316 87.7
Peaxi162Scf00753g00331 Petunia axillaris HOM05D004482 ORTHO05D005212 3.2e-141 505.8 314 86.9
Peaxi162Scf00047g00420 Petunia axillaris HOM05D004482 ORTHO05D005212 6.0e-132 474.9 390 70.5
Cc03_g07940 Coffea canephora HOM05D004482 ORTHO05D005212 1.7e-118 430.3 325 73.5
Hma1.2p1_0187F.1_g082340 Hydrangea macrophylla HOM05D004482 ORTHO05D005212 1.3e-113 414.1 323 69.7
Lj3C404T0 Lonicera japonica HOM05D004482 ORTHO05D005212 8.1e-113 411.4 325 70.5
Lj3A407G37 Lonicera japonica HOM05D004482 ORTHO05D005212 9.0e-112 407.9 336 68.8
SGA_v2.0_scaffold31G12588 Striga asiatica HOM05D004482 ORTHO05D005212 2.0e-111 406.8 320 69.7
Oeu013809.1 Olea europaea HOM05D004482 ORTHO05D005212 4.2e-109 399.1 334 67.1
MSTRG.24610 Avicennia marina HOM05D004482 ORTHO05D005212 5.5e-109 398.7 319 67.7
Actinidia11419 Actinidia chinensis HOM05D004482 ORTHO05D005212 7.1e-109 398.3 316 68.7
Migut.N00400 Erythranthe guttata HOM05D004482 ORTHO05D005212 3.5e-108 396.0 321 67.9
ECA233G3015 Erigeron canadensis HOM05D004482 ORTHO05D005212 1.9e-106 390.2 299 69.2
Manes.15G054600 Manihot esculenta HOM05D004482 ORTHO05D005212 1.6e-105 387.1 316 64.6
Ciclev10005271m.g Citrus clementina HOM05D004482 ORTHO05D005212 5.3e-104 382.1 299 66.9
COL.COLO4_20166 Corchorus olitorius HOM05D004482 ORTHO05D005212 5.3e-104 382.1 303 66.7
Thecc.04G200900 Theobroma cacao HOM05D004482 ORTHO05D005212 9.0e-104 381.3 314 65.3
CiPaw.01G120200 Carya illinoinensis HOM05D004482 ORTHO05D005212 7.6e-103 378.3 317 65.9
QL06p025411 Quercus lobata HOM05D004482 ORTHO05D005212 1.7e-102 377.1 307 65.1
HanXRQChr02g0059021 Helianthus annuus HOM05D004482 ORTHO05D005212 2.9e-102 376.3 317 63.4
Atru.chr4.1674 Acer truncatum HOM05D004482 ORTHO05D005212 1.9e-101 373.6 299 65.9
Cpa.g.sc443.1 Carica papaya HOM05D004482 ORTHO05D005212 1.9e-101 373.6 308 65.9
Duzib151G0803 Durio zibethinus HOM05D004482 ORTHO05D005212 5.5e-101 372.1 303 64.7
Gorai.005G031400 Gossypium raimondii HOM05D004482 ORTHO05D005212 7.1e-101 371.7 303 65.0
GSVIVG01020907001 Vitis vinifera HOM05D004482 ORTHO05D005212 1.2e-100 370.9 304 64.5
MELO3C020442.2 Cucumis melo HOM05D004482 ORTHO05D005212 2.1e-100 370.2 323 62.2
HanXRQChr16g0497991 Helianthus annuus HOM05D004482 ORTHO05D005212 2.1e-100 370.2 317 62.8
Lsat_1_v5_gn_6_61160 Lactuca sativa HOM05D004482 ORTHO05D005212 3.5e-100 369.4 316 63.9
TAR362G0107 Trochodendron aralioides HOM05D004482 ORTHO05D005212 6.0e-100 368.6 316 64.9
CsaV3_2G011600 Cucumis sativus L. HOM05D004482 ORTHO05D005212 7.9e-100 368.2 314 63.4
Gohir.D02G025500 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.0e-99 367.9 303 65.0
Cfa014938 Carpinus fangiana HOM05D004482 ORTHO05D005212 1.5e-98 364.0 310 63.9
Prupe.1G010300 Prunus persica HOM05D004482 ORTHO05D005212 1.5e-98 364.0 308 63.0
PGR083G2076 Punica granatum HOM05D004482 ORTHO05D005212 1.9e-98 363.6 304 64.5
Gohir.A02G021300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.5e-98 363.2 303 63.7
MD04G1010600 Malus domestica HOM05D004482 ORTHO05D005212 5.7e-98 362.1 299 63.5
MD00G1113200 Malus domestica HOM05D004482 ORTHO05D005212 1.1e-96 357.8 310 61.6
Rhsim02G0059000 Rhododendron simsii HOM05D004482 ORTHO05D005212 2.4e-96 356.7 362 56.9
RcHm_v2.0_Chr4g0414711 Rosa chinensis HOM05D004482 ORTHO05D005212 2.4e-96 356.7 318 61.0
Potri.017G056800 Populus trichocarpa HOM05D004482 ORTHO05D005212 3.1e-96 356.3 309 61.8
Gohir.D02G027800 Gossypium hirsutum HOM05D004482 ORTHO05D005212 6.9e-96 355.1 303 63.7
FvH4_4g13790 Fragaria vesca HOM05D004482 ORTHO05D005212 2.6e-95 353.2 307 61.9
FAN12G3502 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.6e-95 353.2 307 61.9
Gohir.A09G205700 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.5e-95 352.4 313 61.3
TWI73G1291 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.7e-94 350.5 308 60.4
Gorai.006G223000 Gossypium raimondii HOM05D004482 ORTHO05D005212 5.0e-94 349.0 305 62.3
Lalb_Chr07g0186731 Lupinus albus HOM05D004482 ORTHO05D005212 8.5e-94 348.2 299 62.2
unitig_8.g4998 Utricularia gibba HOM05D004482 ORTHO05D005212 1.1e-93 347.8 312 62.2
arahy.Tifrunner.gnm1.ann1.R808EC Arachis hypogaea HOM05D004482 ORTHO05D005212 1.4e-93 347.4 300 62.0
Lj4g0012954 Lotus japonicus HOM05D004482 ORTHO05D005212 1.4e-93 347.4 319 59.6
Duzib212G0483 Durio zibethinus HOM05D004482 ORTHO05D005212 2.5e-93 346.7 303 62.0
Gohir.D09G199300 Gossypium hirsutum HOM05D004482 ORTHO05D005212 3.2e-93 346.3 306 62.1
ClCG06G007870 Citrullus lanatus HOM05D004482 ORTHO05D005212 2.7e-92 343.2 336 57.7
Eucgr.H02773 Eucalyptus grandis HOM05D004482 ORTHO05D005212 2.7e-92 343.2 327 58.4
Sed0019182 Sechium edule HOM05D004482 ORTHO05D005212 3.6e-92 342.8 310 61.0
Ca_17968_v3 Cicer arietinum L. HOM05D004482 ORTHO05D005212 7.9e-92 341.7 318 60.7
FAN07G1054 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.9e-92 341.7 339 56.3
FAN17G0447 Fragaria x ananassa HOM05D004482 ORTHO05D005212 7.9e-92 341.7 329 58.4
Glyma.05G154100 Glycine max HOM05D004482 ORTHO05D005212 1.0e-91 341.3 316 60.1
Glyma.08G111900 Glycine max HOM05D004482 ORTHO05D005212 1.0e-91 341.3 298 62.1
Sed0016107 Sechium edule HOM05D004482 ORTHO05D005212 1.4e-91 340.9 317 58.4
TPR.G11944 Trifolium pratense HOM05D004482 ORTHO05D005212 2.3e-91 340.1 299 61.2
Psat7g074240 Pisum sativum HOM05D004482 ORTHO05D005212 3.9e-91 339.3 299 60.9
vmacro15546 Vaccinium macrocarpon HOM05D004482 ORTHO05D005212 1.1e-90 337.8 437 48.1
Medtr8g085350 Medicago truncatula HOM05D004482 ORTHO05D005212 1.9e-90 337.0 298 60.7
Dinv38218 Davidia involucrata HOM05D004482 ORTHO05D005212 5.7e-90 335.5 257 71.2
Dinv27224 Davidia involucrata HOM05D004482 ORTHO05D005212 9.7e-90 334.7 241 74.7
arahy.Tifrunner.gnm1.ann1.ENCW2M Arachis hypogaea HOM05D004482 ORTHO05D005212 1.7e-89 334.0 329 56.8
AUR62018590 Chenopodium quinoa HOM05D004482 ORTHO05D005212 2.4e-88 330.1 304 58.2
Oeu006195.1 Olea europaea HOM05D004482 ORTHO05D005212 5.3e-88 328.9 322 61.2
CANSAT78G1841 Cannabis sativa HOM05D004482 ORTHO05D005212 6.9e-88 328.6 317 57.4
Phvul.003G290900 Phaseolus vulgaris HOM05D004482 ORTHO05D005212 2.9e-86 323.2 302 58.9
Hund18995 Selenicereus undatus HOM05D004482 ORTHO05D005212 3.8e-86 322.8 319 55.8
Gohir.D02G027400 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.1e-85 321.2 303 58.4
HanXRQChr10g0277641 Helianthus annuus HOM05D004482 ORTHO05D005212 1.4e-85 320.9 317 57.1
BcaC02g07886 Brassica carinata HOM05D004482 ORTHO05D005212 3.2e-85 319.7 315 54.6
BolC4t27707H Brassica oleracea HOM05D004482 ORTHO05D005212 5.5e-85 318.9 315 54.6
Nn3g19571 Nelumbo nucifera HOM05D004482 ORTHO05D005212 5.5e-85 318.9 316 59.2
BraA04t18031Z Brassica rapa HOM05D004482 ORTHO05D005212 2.7e-84 316.6 315 54.6
AL4G28200 Arabidopsis lyrata HOM05D004482 ORTHO05D005212 3.6e-84 316.2 317 54.3
A04p25280 Brassica napus HOM05D004482 ORTHO05D005212 3.6e-84 316.2 303 55.8
EL10Ac4g09020 Beta vulgaris HOM05D004482 ORTHO05D005212 4.7e-84 315.8 305 56.4
Carub.0004s1412 Capsella rubella HOM05D004482 ORTHO05D005212 1.0e-83 314.7 317 55.2
Ah.11g041390 Amaranthus hybridus HOM05D004482 ORTHO05D005212 1.4e-83 314.3 303 56.8
Cpa.g.sc173.9 Carica papaya HOM05D004482 ORTHO05D005212 1.4e-83 314.3 258 65.9
Sp4g15100 Schrenkiella parvula HOM05D004482 ORTHO05D005212 2.3e-83 313.5 317 54.9
C03p21360 Brassica napus HOM05D004482 ORTHO05D005212 8.8e-83 311.6 301 56.1
AUR62020829 Chenopodium quinoa HOM05D004482 ORTHO05D005212 8.8e-83 311.6 319 54.9
THA.LOC104826120 Tarenaya hassleriana HOM05D004482 ORTHO05D005212 1.1e-82 311.2 316 54.7
FAN22G1791 Fragaria x ananassa HOM05D004482 ORTHO05D005212 2.0e-82 310.5 407 46.2
Lsat_1_v5_gn_2_46161 Lactuca sativa HOM05D004482 ORTHO05D005212 2.0e-82 310.5 317 54.9
Aqoxy2G00031 Aquilegia oxysepala HOM05D004482 ORTHO05D005212 7.4e-82 308.5 298 55.0
BolC3t14519H Brassica oleracea HOM05D004482 ORTHO05D005212 7.4e-82 308.5 318 54.7
AT2G32760 Arabidopsis thaliana HOM05D004482 ORTHO05D005212 9.7e-82 308.1 317 54.3
A03p18310 Brassica napus HOM05D004482 ORTHO05D005212 2.2e-81 307.0 318 54.4
BraA03t11091Z Brassica rapa HOM05D004482 ORTHO05D005212 2.8e-81 306.6 318 54.4
Aa31LG5G4410 Aethionema arabicum HOM05D004482 ORTHO05D005212 9.1e-80 301.6 353 50.1
SalBow3G0632 Salvia bowleyana HOM05D004482 ORTHO05D005212 1.0e-78 298.1 243 68.3
C04p62340 Brassica napus HOM05D000474 ORTHO05D005212 1.7e-78 297.4 339 50.1
ATR1096G138 Amborella trichopoda HOM05D004482 ORTHO05D005212 2.2e-78 297.0 334 53.0
Nn3g19999 Nelumbo nucifera HOM05D004482 ORTHO05D005212 4.2e-77 292.7 302 56.6
Lalb_Chr21g0313021 Lupinus albus HOM05D004482 ORTHO05D005212 3.6e-76 289.7 256 62.1
MBI19_g24734_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.4e-75 287.7 371 49.1
PSO339G2282 Papaver somniferum HOM05D004482 ORTHO05D005212 5.2e-75 285.8 319 52.0
Haze_11622 Corylus avellana HOM05D004482 ORTHO05D005212 1.7e-73 280.8 523 39.2
BcaB06g28632 Brassica carinata HOM05D004482 ORTHO05D005212 7.0e-72 275.4 316 50.0
PSO384G1658 Papaver somniferum HOM05D004482 ORTHO05D005212 3.5e-71 273.1 317 51.4
HPP92_017061 Vanilla planifolia HOM05D004482 ORTHO05D005212 4.5e-71 272.7 311 50.2
Thhalv10016939m.g Eutrema salsugineum HOM05D004482 ORTHO05D005212 5.9e-71 272.3 283 53.7
CARHR126650 Cardamine hirsuta HOM05D004482 ORTHO05D005212 1.0e-70 271.6 260 56.2
Sc19g0007180 Simmondsia chinensis HOM05D004482 ORTHO05D005212 1.5e-69 267.7 234 62.8
MBI19_g24366_MAGBIO Magnolia biondii HOM05D004482 ORTHO05D005212 1.7e-65 254.2 266 56.4
Os06g0715000 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 3.8e-62 243.0 303 47.2
Gohir.D02G025900 Gossypium hirsutum HOM05D004482 ORTHO05D005212 1.6e-60 237.7 187 65.8
BcaNung06790 Brassica carinata HOM05D004482 ORTHO05D005212 1.0e-59 235.0 249 51.8
Oeu006194.1 Olea europaea HOM05D004482 ORTHO05D005212 1.6e-55 221.1 197 64.0
CDE08G1272 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 5.9e-55 219.2 310 45.5
CDE09G1401 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 2.9e-54 216.9 305 45.9
Gohir.D02G026860 Gossypium hirsutum HOM05D004482 ORTHO05D005212 4.9e-49 199.5 195 56.4
DCAR_001940 Daucus carota HOM05D004482 ORTHO05D005212 4.5e-47 193.0 290 43.8
Duzib212G1026 Durio zibethinus HOM05D004482 ORTHO05D005212 7.5e-42 175.6 126 71.4
SMO334G0086 Selaginella moellendorffii HOM05D004482 ORTHO05D005212 9.8e-42 175.3 326 36.5
ECA238G0855 Erigeron canadensis HOM05D000097 ORTHO05D000041 2.7e-39 167.2 158 57.6
Peaxi162Scf61983g00004 Petunia axillaris HOM05D004482 ORTHO05D005212 1.7e-38 164.5 90 94.4
Mapoly0173s0024 Marchantia polymorpha HOM05D004482 ORTHO05D005212 5.0e-38 162.9 347 33.1
Pp3c14_26480 Physcomitrium patens HOM05D004482 ORTHO05D005212 3.3e-37 160.2 297 36.0
DCAR_012443 Daucus carota HOM05D004482 ORTHO05D005212 4.3e-37 159.8 119 68.1
AagrBONN_evm.TU.Sc2ySwM_228.2912 Anthoceros agrestis HOM05D004482 ORTHO05D005212 2.3e-35 154.1 289 36.0
VMungo0251G0011 Vigna mungo HOM05D004482 ORTHO05D005212 8.9e-35 152.1 124 68.5
SEGI_24214 Sequoiadendron giganteum HOM05D004482 ORTHO05D005212 1.2e-34 151.8 185 49.7
Zm00001eb405320 Zea mays HOM05D004482 ORTHO05D005212 2.6e-34 150.6 165 50.9
Oeu008667.1 Olea europaea HOM05D004482 ORTHO05D005212 3.7e-33 146.7 104 73.1
FAN16G2719 Fragaria x ananassa HOM05D004482 ORTHO05D005212 4.3e-29 133.3 121 61.2
DCAR_012442 Daucus carota HOM05D004482 ORTHO05D005212 2.1e-28 131.0 106 66.0
TWI09G0568 Tripterygium wilfordii HOM05D004482 ORTHO05D005212 1.1e-24 118.6 122 51.6
VMungo0251G0179 Vigna mungo HOM05D004482 ORTHO05D005212 1.9e-24 117.9 155 46.5
Gohir.D02G025833 Gossypium hirsutum HOM05D004482 ORTHO05D005212 2.7e-23 114.0 99 61.6
Os05g0490500 Oryza sativa ssp. japonica HOM05D004482 ORTHO05D005212 1.0e-22 112.1 198 38.4
Sabra17G0048500 Salix brachista HOM05D004482 ORTHO05D005212 1.7e-22 111.3 75 72.0
Sabra17G0050200 Salix brachista HOM05D004482 ORTHO05D005212 1.7e-22 111.3 75 72.0
BcaB01g01629 Brassica carinata HOM05D004482 ORTHO05D005212 5.1e-22 109.8 237 35.9
CDE09G0489 Ceratophyllum demersum HOM05D004482 ORTHO05D005212 1.8e-19 101.3 113 50.4
CBR_g30986 Chara braunii HOM05D000019 ORTHO05D000048 3.5e-15 87.0 144 43.1
EL10Ac4g09026 Beta vulgaris HOM05D004482 ORTHO05D005212 7.3e-13 79.3 87 50.6
Zm00001eb291290 Zea mays HOM05D004482 ORTHO05D005212 2.0e-10 71.2 234 29.5
MCO09G655 Micromonas commoda HOM05D004482 ORTHO05D005212 4.4e-10 70.1 257 30.7
Actinidia39240 Actinidia chinensis HOM05D000280 ORTHO05D000632 9.3e-08 62.4 62 58.1
Cpa.g.sc173.8 Carica papaya HOM05D004482 ORTHO05D005212 1.6e-07 61.6 62 53.2
BcaC08g43547 Brassica carinata HOM05D004482 ORTHO05D005212 8.7e-06 55.8 70 42.9


User provided reference genes

Program Settings