Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026347 Solanum tuberosum HOM05D007535 ORTHO05D008520 9.8e-188 660.6 512 100.0
Sopen11g027410 Solanum pennellii HOM05D007535 ORTHO05D008520 1.3e-171 607.1 518 93.6
Solyc11g068690.2 Solanum lycopersicum HOM05D007535 ORTHO05D008520 2.7e-169 599.4 518 92.9
CAN.G745.17 Capsicum annuum HOM05D007535 ORTHO05D008520 5.6e-119 432.2 517 79.3
Peaxi162Scf00224g00216 Petunia axillaris HOM05D007535 ORTHO05D008520 3.8e-115 419.5 515 78.4
Nitab4.5_0000731g0020 Nicotiana tabacum HOM05D007535 ORTHO05D008520 2.4e-93 347.1 525 72.4
Nitab4.5_0008177g0030 Nicotiana tabacum HOM05D007535 ORTHO05D008520 3.8e-91 339.7 525 69.7
Actinidia07260 Actinidia chinensis HOM05D007535 ORTHO05D008520 2.3e-40 171.0 539 50.5
Thecc.09G278200 Theobroma cacao HOM05D007535 ORTHO05D008520 4.4e-39 166.8 519 45.3
Prupe.6G137100 Prunus persica HOM05D007535 ORTHO05D008520 8.3e-38 162.5 513 54.2
Hund18777 Selenicereus undatus HOM05D007535 ORTHO05D008520 9.2e-37 159.1 519 44.5
Rhsim13G0113500 Rhododendron simsii HOM05D000001 ORTHO05D000003 1.3e-35 155.2 545 36.1
Nn6g34805 Nelumbo nucifera HOM05D007535 ORTHO05D008520 3.0e-35 154.1 488 52.7
vmacro03328 Vaccinium macrocarpon HOM05D007535 ORTHO05D008520 5.1e-35 153.3 529 38.8
Psat5g257880 Pisum sativum HOM05D007535 ORTHO05D008520 6.6e-35 152.9 517 49.7
Medtr2g086950 Medicago truncatula HOM05D007535 ORTHO05D008520 1.5e-34 151.8 519 53.8
RcHm_v2.0_Chr5g0046091 Rosa chinensis HOM05D007535 ORTHO05D008520 4.3e-34 150.2 510 55.9
PSO384G1635 Papaver somniferum HOM05D007535 ORTHO05D008520 2.1e-33 147.9 512 48.6
SGA_v2.0_scaffold177G39436 Striga asiatica HOM05D007535 ORTHO05D008520 3.1e-32 144.1 524 45.6
Gorai.004G011300 Gossypium raimondii HOM05D007535 ORTHO05D008520 5.2e-32 143.3 519 48.6
Cc00_g20950 Coffea canephora HOM05D007535 ORTHO05D008520 8.9e-32 142.5 517 53.0
GSVIVG01036079001 Vitis vinifera HOM05D007535 ORTHO05D008520 8.9e-32 142.5 513 52.2
DCAR_024892 Daucus carota HOM05D007535 ORTHO05D008520 4.4e-31 140.2 522 42.3
CSS0035480 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 9.9e-31 139.0 321 34.9
Migut.N02473 Erythranthe guttata HOM05D007535 ORTHO05D008520 1.3e-30 138.7 513 53.0
Hma1.2p1_2164F.1_g315730 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.3e-30 138.7 320 36.9
Hma1.2p1_2164F.1_g315740 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 1.7e-30 138.3 319 36.7
MD03G1150100 Malus domestica HOM05D007535 ORTHO05D008520 1.7e-30 138.3 512 53.5
Nitab4.5_0001640g0010 Nicotiana tabacum HOM05D007535 ORTHO05D008520 6.4e-30 136.3 310 39.7
Lj2A969T70 Lonicera japonica HOM05D007535 ORTHO05D008520 8.4e-30 136.0 555 37.8
Gohir.D08G017000 Gossypium hirsutum HOM05D007535 ORTHO05D008520 1.9e-29 134.8 517 47.4
Lsat_1_v5_gn_2_34620 Lactuca sativa HOM05D007535 ORTHO05D008520 2.7e-28 131.0 372 58.1
Gohir.A08G006800 Gossypium hirsutum HOM05D007535 ORTHO05D008520 3.5e-28 130.6 515 46.8
unitig_27.g25117 Utricularia gibba HOM05D007535 ORTHO05D008520 3.5e-28 130.6 520 48.3
FAN21G0330 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.0e-27 129.0 515 44.9
ECA238G4833 Erigeron canadensis HOM05D007535 ORTHO05D008520 1.3e-27 128.6 347 52.7
Ca_01647_v3 Cicer arietinum L. HOM05D002184 ORTHO05D002379 2.3e-27 127.9 520 53.3
Manes.04G001100 Manihot esculenta HOM05D007535 ORTHO05D008520 3.0e-27 127.5 521 47.0
FvH4_3g25730 Fragaria vesca HOM05D007535 ORTHO05D008520 3.9e-27 127.1 508 53.7
TAR633G1755 Trochodendron aralioides HOM05D007535 ORTHO05D008520 5.1e-27 126.7 513 51.9
FAN25G3072 Fragaria x ananassa HOM05D007535 ORTHO05D008520 8.7e-27 125.9 507 53.8
EL10Ac7g16124 Beta vulgaris HOM05D007535 ORTHO05D008520 1.1e-26 125.6 519 42.0
ClCG01G011770 Citrullus lanatus HOM05D007535 ORTHO05D008520 1.1e-26 125.6 519 49.9
MSTRG.12377 Avicennia marina HOM05D007535 ORTHO05D008520 1.9e-26 124.8 521 51.2
Dinv08923 Davidia involucrata HOM05D007535 ORTHO05D008520 2.5e-26 124.4 515 36.5
PSO339G0294 Papaver somniferum HOM05D007535 ORTHO05D008520 2.5e-26 124.4 510 44.7
Sed0017293 Sechium edule HOM05D007535 ORTHO05D008520 4.3e-26 123.6 516 50.4
FAN11G3206 Fragaria x ananassa HOM05D007535 ORTHO05D008520 1.6e-25 121.7 508 53.3
Cpa.g.sc195.29 Carica papaya HOM05D007535 ORTHO05D008520 2.1e-25 121.3 314 33.8
Glyma.12G186700 Glycine max HOM05D007535 ORTHO05D008520 2.1e-25 121.3 517 50.5
HanXRQChr14g0433121 Helianthus annuus HOM05D007535 ORTHO05D008520 3.6e-25 120.6 434 56.2
SalBow3G0383 Salvia bowleyana HOM05D007535 ORTHO05D008520 1.4e-24 118.6 512 52.0
AUR62001527 Chenopodium quinoa HOM05D007535 ORTHO05D008520 3.4e-23 114.0 525 42.3
Aqoxy4G02717 Aquilegia oxysepala HOM05D007535 ORTHO05D008520 1.3e-22 112.1 520 35.0
Sc12g0004670 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.3e-22 112.1 508 41.1
VMungo1080G1542 Vigna mungo HOM05D007535 ORTHO05D008520 6.4e-22 109.8 521 48.0
Ciclev10028368m.g Citrus clementina HOM05D007535 ORTHO05D008520 2.4e-21 107.8 517 52.0
Lj3g0000707 Lotus japonicus HOM05D007535 ORTHO05D008520 3.2e-21 107.5 524 44.1
Eucgr.J00525 Eucalyptus grandis HOM05D007535 ORTHO05D008520 9.3e-21 105.9 517 48.9
arahy.Tifrunner.gnm1.ann1.ETK20Z Arachis hypogaea HOM05D007535 ORTHO05D008520 2.1e-20 104.8 515 49.9
THA.LOC104810927 Tarenaya hassleriana HOM05D007535 ORTHO05D008520 2.1e-20 104.8 293 72.0
TWI79G0866 Tripterygium wilfordii HOM05D007535 ORTHO05D008520 2.1e-20 104.8 517 50.5
CsaV3_1G015090 Cucumis sativus L. HOM05D007535 ORTHO05D008520 3.5e-20 104.0 517 49.1
arahy.Tifrunner.gnm1.ann1.TGP3GH Arachis hypogaea HOM05D007535 ORTHO05D008520 6.0e-20 103.2 523 40.7
Oeu024409.1 Olea europaea HOM05D007535 ORTHO05D008520 6.0e-20 103.2 62 80.6
Sc12g0004620 Simmondsia chinensis HOM05D007535 ORTHO05D008520 1.7e-19 101.7 508 37.4
Cfa009985 Carpinus fangiana HOM05D007535 ORTHO05D008520 3.9e-19 100.5 404 57.4
CDE02G4009 Ceratophyllum demersum HOM05D007535 ORTHO05D008520 3.9e-19 100.5 513 45.6
Duzib150G0908 Durio zibethinus HOM05D007535 ORTHO05D008520 5.1e-19 100.1 160 41.9
Glyma.13G314800 Glycine max HOM05D007535 ORTHO05D008520 5.1e-19 100.1 406 57.9
Ciclev10029981m.g Citrus clementina HOM05D007535 ORTHO05D008520 6.6e-19 99.8 516 42.8
QL01p011831 Quercus lobata HOM05D007535 ORTHO05D008520 1.5e-18 98.6 562 44.1
TPR.G4567 Trifolium pratense HOM05D007535 ORTHO05D008520 4.3e-18 97.1 514 48.6
Atru.chr3.3166 Acer truncatum HOM05D007535 ORTHO05D008520 9.6e-18 95.9 289 70.2
MBI17_g01489_MAGBIO Magnolia biondii HOM05D007535 ORTHO05D008520 2.1e-17 94.7 308 32.5
Potri.004G199200 Populus trichocarpa HOM05D007535 ORTHO05D008520 2.8e-17 94.4 513 48.9
Hma1.2p1_2164F.1_g315720 Hydrangea macrophylla HOM05D007535 ORTHO05D008520 8.1e-17 92.8 61 73.8
Lalb_Chr24g0393491 Lupinus albus HOM05D007535 ORTHO05D008520 6.9e-16 89.7 237 35.4
MELO3C025588.2 Cucumis melo HOM05D007535 ORTHO05D008520 1.2e-15 89.0 313 31.0
FAN25G1573 Fragaria x ananassa HOM05D007535 ORTHO05D008520 2.0e-15 88.2 364 61.8
Actinidia24230 Actinidia chinensis HOM05D007535 ORTHO05D008520 4.5e-15 87.0 73 61.6
PGR119G1786 Punica granatum HOM05D007535 ORTHO05D008520 5.8e-15 86.7 520 49.2
HPP92_011495 Vanilla planifolia HOM05D007535 ORTHO05D008520 5.8e-15 86.7 312 31.4
Zm00001eb140080 Zea mays HOM05D007535 ORTHO05D008520 5.8e-15 86.7 519 48.2
Haze_23344 Corylus avellana HOM05D007535 ORTHO05D008520 2.9e-14 84.3 203 36.5
CiPaw.14G097800 Carya illinoinensis HOM05D007535 ORTHO05D008520 1.9e-13 81.6 450 54.0
AUR62020256 Chenopodium quinoa HOM05D007535 ORTHO05D008520 5.4e-13 80.1 273 52.4
CANSAT54G2250 Cannabis sativa HOM05D007535 ORTHO05D008520 7.1e-13 79.7 513 50.7
ATR0081G029 Amborella trichopoda HOM05D007535 ORTHO05D008520 1.8e-11 75.1 61 55.7
Os01g0966400 Oryza sativa ssp. japonica HOM05D007535 ORTHO05D008520 2.3e-11 74.7 303 30.0
Sabra04G0134300 Salix brachista HOM05D001716 ORTHO05D004234 2.3e-11 74.7 512 38.5
Ciclev10028316m.g Citrus clementina HOM05D007535 ORTHO05D008520 8.7e-11 72.8 515 48.9
AL6G33340 Arabidopsis lyrata HOM05D012474 ORTHO05D008520 7.4e-10 69.7 281 66.9
Carub.0006s2006 Capsella rubella HOM05D012474 ORTHO05D008520 7.4e-10 69.7 304 62.2
FAN16G1906 Fragaria x ananassa HOM05D007535 ORTHO05D008520 3.7e-09 67.4 311 28.3
C09p54250 Brassica napus HOM05D012474 ORTHO05D008520 6.9e-08 63.2 78 44.9
C09p54330 Brassica napus HOM05D012474 ORTHO05D008520 6.9e-08 63.2 78 44.9
BolC9t58300H Brassica oleracea HOM05D012474 ORTHO05D008520 6.9e-08 63.2 78 44.9
BcaC04g19565 Brassica carinata HOM05D012474 ORTHO05D008520 1.5e-07 62.0 78 44.9
CSS0011293 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 1.5e-07 62.0 42 73.8
CARHR191220 Cardamine hirsuta HOM05D012474 ORTHO05D008520 4.5e-07 60.5 303 62.7
A10p18500 Brassica napus HOM05D012474 ORTHO05D008520 2.9e-06 57.8 75 44.0
BraA10t43930Z Brassica rapa HOM05D012474 ORTHO05D008520 2.9e-06 57.8 75 44.0
CSS0011895 Camellia sinensis var. sinensis HOM05D007535 ORTHO05D008520 4.9e-06 57.0 39 74.4
Thhalv10013516m.g Eutrema salsugineum HOM05D012474 ORTHO05D008520 4.9e-06 57.0 95 38.9
Actinidia24231 Actinidia chinensis HOM05D007535 ORTHO05D008520 8.4e-06 56.2 187 34.2
CANSAT78G2361 Cannabis sativa HOM05D000107 ORTHO05D000062 8.4e-06 56.2 41 65.9
MD11G1168900 Malus domestica HOM05D007535 ORTHO05D008520 8.4e-06 56.2 57 54.4


User provided reference genes

Program Settings