Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGSC0003DMG400026342 Solanum tuberosum HOM05D003756 ORTHO05D004304 2.3e-72 275.4 132 100.0
Solyc11g068400.2 Solanum lycopersicum HOM05D003756 ORTHO05D004304 2.7e-25 119.0 61 95.1
Sopen11g027120 Solanum pennellii HOM05D003756 ORTHO05D004304 2.7e-25 119.0 61 95.1
CAN.G1358.12 Capsicum annuum HOM05D003756 ORTHO05D004304 6.9e-21 104.4 62 83.9
Eucgr.K02043 Eucalyptus grandis HOM05D003756 ORTHO05D004304 1.2e-20 103.6 65 73.8
Peaxi162Scf00003g00522 Petunia axillaris HOM05D003756 ORTHO05D004304 1.0e-19 100.5 62 80.6
MELO3C024548.2 Cucumis melo HOM05D003756 ORTHO05D004304 1.7e-19 99.8 61 75.4
CAN.G2235.1 Capsicum annuum HOM05D003756 ORTHO05D004304 2.2e-19 99.4 62 79.0
Nitab4.5_0000755g0180 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.2e-19 99.4 59 79.7
ClCG04G010050 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.9e-19 99.0 61 73.8
CsaV3_6G040700 Cucumis sativus L. HOM05D003756 ORTHO05D004304 2.9e-19 99.0 64 75.0
Ca_09004_v3 Cicer arietinum L. HOM05D003756 ORTHO05D004304 3.8e-19 98.6 61 75.4
Sed0019143 Sechium edule HOM05D003756 ORTHO05D004304 3.8e-19 98.6 61 73.8
MELO3C009472.2 Cucumis melo HOM05D003756 ORTHO05D004304 5.0e-19 98.2 61 73.8
CsaV3_3G037270 Cucumis sativus L. HOM05D003756 ORTHO05D004304 5.0e-19 98.2 61 73.8
PGR142G3329 Punica granatum HOM05D003756 ORTHO05D004304 6.5e-19 97.8 65 69.2
CSS0028702 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 8.5e-19 97.4 65 69.2
MD12G1036000 Malus domestica HOM05D003756 ORTHO05D004304 8.5e-19 97.4 61 75.4
GSVIVG01033840001 Vitis vinifera HOM05D003756 ORTHO05D004304 8.5e-19 97.4 65 69.2
CANSAT80G0977 Cannabis sativa HOM05D003756 ORTHO05D004304 1.1e-18 97.1 65 69.2
Cc01_g09260 Coffea canephora HOM05D003756 ORTHO05D004304 1.1e-18 97.1 63 69.8
Lj6g0015332 Lotus japonicus HOM05D003756 ORTHO05D004304 1.4e-18 96.7 61 75.4
Psat3g033400 Pisum sativum HOM05D003756 ORTHO05D004304 1.4e-18 96.7 61 75.4
Prupe.7G110400 Prunus persica HOM05D003756 ORTHO05D004304 1.4e-18 96.7 61 75.4
FvH4_5g38790 Fragaria vesca HOM05D003756 ORTHO05D004304 1.9e-18 96.3 65 70.8
Cfa016605 Carpinus fangiana HOM05D003756 ORTHO05D004304 2.5e-18 95.9 66 72.7
ClCG04G010070 Citrullus lanatus HOM05D003756 ORTHO05D004304 2.5e-18 95.9 61 72.1
Haze_19608 Corylus avellana HOM05D003756 ORTHO05D004304 2.5e-18 95.9 66 72.7
FvH4_6g18660 Fragaria vesca HOM05D003756 ORTHO05D004304 2.5e-18 95.9 66 72.7
FAN02G3109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-18 95.9 66 72.7
FAN05G1127 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-18 95.9 66 72.7
FAN05G3155 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-18 95.9 66 72.7
FAN09G2235 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-18 95.9 66 72.7
FAN14G1823 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.5e-18 95.9 66 72.7
MD14G1022700 Malus domestica HOM05D003756 ORTHO05D004304 2.5e-18 95.9 61 73.8
Medtr7g104570 Medicago truncatula HOM05D003756 ORTHO05D004304 2.5e-18 95.9 61 75.4
CiPaw.09G013700 Carya illinoinensis HOM05D003756 ORTHO05D004304 3.2e-18 95.5 63 69.8
Phvul.001G190200 Phaseolus vulgaris HOM05D003756 ORTHO05D004304 3.2e-18 95.5 65 69.2
Potri.009G149300 Populus trichocarpa HOM05D003756 ORTHO05D004304 3.2e-18 95.5 65 66.2
Prupe.1G506800 Prunus persica HOM05D003756 ORTHO05D004304 4.2e-18 95.1 61 73.8
Sabra04G0129400 Salix brachista HOM05D003756 ORTHO05D004304 4.2e-18 95.1 65 66.2
unitig_747.g21944 Utricularia gibba HOM05D003756 ORTHO05D004304 4.2e-18 95.1 61 72.1
Oeu002376.1 Olea europaea HOM05D003756 ORTHO05D004304 5.5e-18 94.7 65 69.2
Potri.004G188700 Populus trichocarpa HOM05D003756 ORTHO05D004304 5.5e-18 94.7 65 66.2
Sc20g0006280 Simmondsia chinensis HOM05D003756 ORTHO05D004304 7.2e-18 94.4 65 69.2
Glyma.03G195700 Glycine max HOM05D003756 ORTHO05D004304 9.4e-18 94.0 65 67.7
Lalb_Chr20g0111721 Lupinus albus HOM05D003756 ORTHO05D004304 9.4e-18 94.0 67 68.7
CiPaw.10G009500 Carya illinoinensis HOM05D003756 ORTHO05D004304 1.2e-17 93.6 65 66.2
CDE06G0646 Ceratophyllum demersum HOM05D003756 ORTHO05D004304 1.2e-17 93.6 61 75.4
Actinidia24215 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.6e-17 93.2 61 77.0
arahy.Tifrunner.gnm1.ann1.IH6TUL Arachis hypogaea HOM05D003756 ORTHO05D004304 1.6e-17 93.2 61 70.5
ClCG10G018980 Citrullus lanatus HOM05D003756 ORTHO05D004304 1.6e-17 93.2 61 70.5
TAR636G3345 Trochodendron aralioides HOM05D003756 ORTHO05D004304 1.6e-17 93.2 61 68.9
Manes.08G025100 Manihot esculenta HOM05D003756 ORTHO05D004304 2.1e-17 92.8 65 67.7
Ah.15g090880 Amaranthus hybridus HOM05D003756 ORTHO05D004304 2.7e-17 92.4 65 66.2
Aqoxy2G03946 Aquilegia oxysepala HOM05D003756 ORTHO05D004304 2.7e-17 92.4 62 72.6
RcHm_v2.0_Chr3g0473621 Rosa chinensis HOM05D003756 ORTHO05D004304 2.7e-17 92.4 61 72.1
TAR623G0741 Trochodendron aralioides HOM05D003756 ORTHO05D004304 2.7e-17 92.4 69 65.2
FAN18G4123 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.6e-17 92.0 68 67.6
Sabra09G0117900 Salix brachista HOM05D003756 ORTHO05D004304 6.1e-17 91.3 57 71.9
SalBow5G5426 Salvia bowleyana HOM05D003756 ORTHO05D004304 6.1e-17 91.3 61 70.5
Actinidia07248 Actinidia chinensis HOM05D003756 ORTHO05D004304 8.0e-17 90.9 61 75.4
Gohir.A01G206400 Gossypium hirsutum HOM05D003756 ORTHO05D004304 8.0e-17 90.9 61 70.5
Gorai.002G240000 Gossypium raimondii HOM05D003756 ORTHO05D004304 8.0e-17 90.9 61 70.5
MD15G1359000 Malus domestica HOM05D003756 ORTHO05D004304 8.0e-17 90.9 65 66.2
Atru.chr8.1542 Acer truncatum HOM05D003756 ORTHO05D004304 1.0e-16 90.5 61 67.2
AL5G33490 Arabidopsis lyrata HOM05D003756 ORTHO05D004304 1.0e-16 90.5 61 68.9
AT3G52730 Arabidopsis thaliana HOM05D003756 ORTHO05D004304 1.0e-16 90.5 61 68.9
Carub.0005s1918 Capsella rubella HOM05D003756 ORTHO05D004304 1.0e-16 90.5 61 68.9
CARHR162600 Cardamine hirsuta HOM05D003756 ORTHO05D004304 1.0e-16 90.5 61 68.9
AUR62006180 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.0e-16 90.5 61 70.5
AUR62028527 Chenopodium quinoa HOM05D003756 ORTHO05D004304 1.0e-16 90.5 61 70.5
HanXRQChr01g0024081 Helianthus annuus HOM05D003756 ORTHO05D004304 1.0e-16 90.5 65 67.7
Lalb_Chr25g0288331 Lupinus albus HOM05D003756 ORTHO05D004304 1.0e-16 90.5 64 68.8
Nitab4.5_0006996g0050 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.0e-16 90.5 56 76.8
Sed0014276 Sechium edule HOM05D003756 ORTHO05D004304 1.0e-16 90.5 61 68.9
Actinidia35464 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.4e-16 90.1 61 73.8
Duzib128G1348 Durio zibethinus HOM05D003756 ORTHO05D004304 1.4e-16 90.1 66 68.2
Gohir.A09G139300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.4e-16 90.1 66 68.2
Gohir.D09G135300 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.4e-16 90.1 66 68.2
Gorai.006G155200 Gossypium raimondii HOM05D003756 ORTHO05D004304 1.4e-16 90.1 66 68.2
Lsat_1_v5_gn_1_59380 Lactuca sativa HOM05D003756 ORTHO05D004304 1.4e-16 90.1 65 67.7
Actinidia37081 Actinidia chinensis HOM05D003756 ORTHO05D004304 1.8e-16 89.7 56 80.4
arahy.Tifrunner.gnm1.ann1.N59HKK Arachis hypogaea HOM05D003756 ORTHO05D004304 1.8e-16 89.7 57 70.2
Duzib106G1642 Durio zibethinus HOM05D003756 ORTHO05D004304 1.8e-16 89.7 66 66.7
SalBow6G3312 Salvia bowleyana HOM05D003756 ORTHO05D004304 1.8e-16 89.7 57 71.9
THA.LOC104799762 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 1.8e-16 89.7 65 64.6
FAN04G2492 Fragaria x ananassa HOM05D003756 ORTHO05D004304 2.3e-16 89.4 59 69.5
Gohir.D01G195800 Gossypium hirsutum HOM05D003756 ORTHO05D004304 2.3e-16 89.4 61 68.9
HanXRQChr14g0451601 Helianthus annuus HOM05D003756 ORTHO05D004304 2.3e-16 89.4 61 70.5
Nitab4.5_0001216g0110 Nicotiana tabacum HOM05D003756 ORTHO05D004304 2.3e-16 89.4 56 75.0
QL07p038800 Quercus lobata HOM05D003756 ORTHO05D004304 2.3e-16 89.4 67 62.7
QL07p039050 Quercus lobata HOM05D003756 ORTHO05D004304 2.3e-16 89.4 67 62.7
Thecc.05G088800 Theobroma cacao HOM05D003756 ORTHO05D004304 2.3e-16 89.4 63 66.7
TWI74G1420 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 2.3e-16 89.4 59 71.2
CAN.G1039.16 Capsicum annuum HOM05D003756 ORTHO05D004304 3.0e-16 89.0 65 63.1
Cpa.g.sc5.21 Carica papaya HOM05D003756 ORTHO05D004304 3.0e-16 89.0 65 61.5
MD07G1149900 Malus domestica HOM05D003756 ORTHO05D004304 3.0e-16 89.0 61 68.9
EL10Ac7g16918 Beta vulgaris HOM05D003756 ORTHO05D004304 3.9e-16 88.6 56 75.0
Dinv42555 Davidia involucrata HOM05D003756 ORTHO05D004304 3.9e-16 88.6 61 72.1
Lsat_1_v5_gn_6_38741 Lactuca sativa HOM05D003756 ORTHO05D004304 3.9e-16 88.6 65 66.2
Hund19934 Selenicereus undatus HOM05D003756 ORTHO05D004304 3.9e-16 88.6 56 71.4
TAR633G1678 Trochodendron aralioides HOM05D003756 ORTHO05D004304 3.9e-16 88.6 56 69.6
Nn6g34903 Nelumbo nucifera HOM05D003756 ORTHO05D004304 5.2e-16 88.2 65 64.6
THA.LOC104804928 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 5.2e-16 88.2 65 64.6
Atru.chr8.1539 Acer truncatum HOM05D003756 ORTHO05D004304 6.7e-16 87.8 61 63.9
COL.COLO4_29737 Corchorus olitorius HOM05D003756 ORTHO05D004304 6.7e-16 87.8 57 71.9
Gohir.D01G127900 Gossypium hirsutum HOM05D003756 ORTHO05D004304 6.7e-16 87.8 63 65.1
Gorai.002G158500 Gossypium raimondii HOM05D003756 ORTHO05D004304 6.7e-16 87.8 63 65.1
Sc02g0000240 Simmondsia chinensis HOM05D003756 ORTHO05D004304 6.7e-16 87.8 58 69.0
HPP92_026089 Vanilla planifolia HOM05D003756 ORTHO05D004304 6.7e-16 87.8 65 63.1
Glyma.13G153500 Glycine max HOM05D003756 ORTHO05D004304 8.8e-16 87.4 66 63.6
TWI53G0293 Tripterygium wilfordii HOM05D003756 ORTHO05D004304 8.8e-16 87.4 55 72.7
CSS0017737 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.1e-15 87.0 65 64.6
CSS0036255 Camellia sinensis var. sinensis HOM05D003756 ORTHO05D004304 1.1e-15 87.0 65 64.6
Gohir.A01G138200 Gossypium hirsutum HOM05D003756 ORTHO05D004304 1.1e-15 87.0 63 63.5
HanXRQChr02g0054771 Helianthus annuus HOM05D003756 ORTHO05D004304 1.1e-15 87.0 61 68.9
Oeu035551.2 Olea europaea HOM05D003756 ORTHO05D004304 1.5e-15 86.7 56 76.8
MBI17_g08353_MAGBIO Magnolia biondii HOM05D003756 ORTHO05D004304 2.0e-15 86.3 59 69.5
TPR.G19525 Trifolium pratense HOM05D003756 ORTHO05D004304 2.0e-15 86.3 56 73.2
Dinv29482 Davidia involucrata HOM05D003756 ORTHO05D004304 2.6e-15 85.9 57 73.7
HPP92_025135 Vanilla planifolia HOM05D003756 ORTHO05D004304 2.6e-15 85.9 65 63.1
Ciclev10013189m.g Citrus clementina HOM05D003756 ORTHO05D004304 3.3e-15 85.5 57 64.9
CAN.G28765.1 Capsicum annuum HOM05D003756 ORTHO05D004304 4.4e-15 85.1 63 71.4
Duzib093G1183 Durio zibethinus HOM05D003756 ORTHO05D004304 4.4e-15 85.1 57 73.7
ECA248G1642 Erigeron canadensis HOM05D003756 ORTHO05D004304 4.4e-15 85.1 59 66.1
Nitab4.5_0000132g0030 Nicotiana tabacum HOM05D003756 ORTHO05D004304 5.7e-15 84.7 56 69.6
PGSC0003DMG400005923 Solanum tuberosum HOM05D003756 ORTHO05D004304 5.7e-15 84.7 55 70.9
Migut.D02449 Erythranthe guttata HOM05D003756 ORTHO05D004304 7.4e-15 84.3 61 67.2
ECA233G1974 Erigeron canadensis HOM05D003756 ORTHO05D004304 9.7e-15 84.0 59 66.1
THA.LOC104823490 Tarenaya hassleriana HOM05D003756 ORTHO05D004304 9.7e-15 84.0 61 63.9
Nitab4.5_0000963g0100 Nicotiana tabacum HOM05D003756 ORTHO05D004304 1.3e-14 83.6 56 67.9
ECA238G2045 Erigeron canadensis HOM05D003756 ORTHO05D004304 1.7e-14 83.2 55 70.9
SEGI_29748 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.8e-14 82.4 59 62.7
Hma1.2p1_0578F.1_g182500 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 3.7e-14 82.0 56 71.4
Thhalv10010889m.g Eutrema salsugineum HOM05D003756 ORTHO05D004304 4.8e-14 81.6 51 72.5
Hma1.2p1_0084F.1_g043780 Hydrangea macrophylla HOM05D003756 ORTHO05D004304 6.3e-14 81.3 56 66.1
Aa31LG5G21370 Aethionema arabicum HOM05D003756 ORTHO05D004304 1.1e-13 80.5 59 61.0
Rhsim01G0205100 Rhododendron simsii HOM05D003756 ORTHO05D004304 1.1e-13 80.5 57 64.9
RcHm_v2.0_Chr7g0240771 Rosa chinensis HOM05D003756 ORTHO05D004304 1.1e-13 80.5 65 56.9
Sp4g18470 Schrenkiella parvula HOM05D003756 ORTHO05D004304 1.4e-13 80.1 57 64.9
BcaB02g07820 Brassica carinata HOM05D003756 ORTHO05D004304 2.4e-13 79.3 51 70.6
BcaB02g08557 Brassica carinata HOM05D003756 ORTHO05D004304 2.4e-13 79.3 51 70.6
BcaC02g09226 Brassica carinata HOM05D003756 ORTHO05D004304 2.4e-13 79.3 51 70.6
C04p40240 Brassica napus HOM05D003756 ORTHO05D004304 2.4e-13 79.3 51 70.6
BolC4t25600H Brassica oleracea HOM05D003756 ORTHO05D004304 2.4e-13 79.3 51 70.6
Sp5g09600 Schrenkiella parvula HOM05D003756 ORTHO05D004304 2.4e-13 79.3 51 70.6
A04p06750 Brassica napus HOM05D003756 ORTHO05D004304 3.1e-13 79.0 51 68.6
ATR0796G241 Amborella trichopoda HOM05D003756 ORTHO05D004304 4.1e-13 78.6 49 73.5
Ah.08g210600 Amaranthus hybridus HOM05D001616 ORTHO05D003701 7.0e-13 77.8 89 47.2
CAN.G919.30 Capsicum annuum HOM05D003756 ORTHO05D004304 7.0e-13 77.8 51 66.7
Glyma.19G194915 Glycine max HOM05D003756 ORTHO05D004304 9.1e-13 77.4 94 45.7
Mapoly0074s0034 Marchantia polymorpha HOM05D003756 ORTHO05D004304 9.1e-13 77.4 63 55.6
BraA04t16378Z Brassica rapa HOM05D003756 ORTHO05D004304 1.2e-12 77.0 61 59.0
BcaB01g00346 Brassica carinata HOM05D003756 ORTHO05D004304 2.0e-12 76.3 50 68.0
BcaC07g39638 Brassica carinata HOM05D003756 ORTHO05D004304 2.0e-12 76.3 50 68.0
A09p45820 Brassica napus HOM05D003756 ORTHO05D004304 2.0e-12 76.3 50 68.0
C08p28010 Brassica napus HOM05D003756 ORTHO05D004304 2.0e-12 76.3 50 68.0
BolC8t50413H Brassica oleracea HOM05D003756 ORTHO05D004304 2.0e-12 76.3 50 68.0
BraA09t40043Z Brassica rapa HOM05D003756 ORTHO05D004304 2.0e-12 76.3 50 68.0
SEGI_32530 Sequoiadendron giganteum HOM05D003756 ORTHO05D004304 2.0e-12 76.3 60 63.3
Rhsim13G0111400 Rhododendron simsii HOM05D003756 ORTHO05D004304 4.5e-12 75.1 46 73.9
Zm00001eb093400 Zea mays HOM05D003756 ORTHO05D004304 4.5e-12 75.1 55 60.0
PSO384G4395 Papaver somniferum HOM05D003756 ORTHO05D004304 1.3e-11 73.6 64 57.8
Zm00001eb196190 Zea mays HOM05D003756 ORTHO05D004304 1.3e-11 73.6 51 64.7
PSO339G6416 Papaver somniferum HOM05D003756 ORTHO05D004304 1.7e-11 73.2 64 57.8
MD16G1126500 Malus domestica HOM05D003756 ORTHO05D004304 2.2e-11 72.8 58 60.3
Os05g0400400 Oryza sativa ssp. japonica HOM05D003756 ORTHO05D004304 2.9e-11 72.4 51 62.7
FAN13G0109 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.5e-10 70.1 57 61.4
Pp3c7_2560 Physcomitrium patens HOM05D003756 ORTHO05D004304 4.2e-10 68.6 59 47.5
Pp3c11_23610 Physcomitrium patens HOM05D003756 ORTHO05D004304 2.1e-09 66.2 59 44.1
FAN21G3678 Fragaria x ananassa HOM05D002333 ORTHO05D004304 4.7e-09 65.1 45 73.3
CBR_g21065 Chara braunii HOM05D003756 ORTHO05D004304 6.1e-09 64.7 60 53.3
MELO3C032936.2 Cucumis melo HOM05D003756 ORTHO05D004304 6.1e-09 64.7 41 68.3
PSO478G0414 Papaver somniferum HOM05D003756 ORTHO05D004304 6.1e-09 64.7 50 58.0
Dinv33579 Davidia involucrata HOM05D003756 ORTHO05D004304 1.2e-07 60.5 36 75.0
FAN04G2029 Fragaria x ananassa HOM05D003756 ORTHO05D004304 1.5e-07 60.1 57 56.1
RcHm_v2.0_Chr7g0240761 Rosa chinensis HOM05D003756 ORTHO05D004304 1.5e-07 60.1 40 65.0
FAN04G1204 Fragaria x ananassa HOM05D003756 ORTHO05D004304 3.3e-07 58.9 57 54.4
Aa31LG10G7740 Aethionema arabicum HOM05D003756 ORTHO05D004304 7.5e-07 57.8 57 54.4


User provided reference genes

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